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Gilles Sadowski
MATH-874
First steps in updating the "optimization" section of the userguide.
Moved "fitting" to its own section.


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Thomas Neidhart
[MATH-962] Added clarification to the javadoc of VectorFormat and derived classes.

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Thomas Neidhart
[MATH-898] Finish FuzzyKMeans clustering algorithm.

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Thomas Neidhart
[MATH-898] Add initial tests for fuzzy clusterer.

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Thomas Neidhart
[MATH-898] Add implementation of fuzzy k-means clusterer.

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Luc Maisonobe
Fixed inconsistency preventing use of secondary states in ODE events.

JIRA: MATH-965

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Thomas Neidhart
Remove unused import.

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1365338852
Luc Maisonobe
Updated [math] specific release howto.

 - added references to the general Apache Commons release howtos,
 - changed the staging area of the distribution files to the Apache
   servers (and not the Nexus repository),
 - added the URL of the site for direct subversion control

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Luc Maisonobe
preparing changes.xml for next release

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Gilles Sadowski
New target for deploying the web site.


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Luc Maisonobe
increment version number after 3.2 release

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Luc Maisonobe
Reverting version to 3.2-SNAPSHOT after tag creation.

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Luc Maisonobe
Preparing RC5 for release 3.2.

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Luc Maisonobe
Updated release notes with latest bug fixes.

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Luc Maisonobe
Scheduled date for 3.2 released pushed to April 6th.

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Luc Maisonobe
Fixed wrong array dimensions in secondary equations handling.

JIRA: MATH-961

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1364929375
Luc Maisonobe
Fixed missing side effects of secondary equations.

When secondary equations have a side effect on main state in Ordinary
Differential Equations integration, it is now preoerly taken into
account.

JIRA: MATH-960

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1364909906
Gilles Sadowski
Unit tests.


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Luc Maisonobe
Reverting pom version after tag creation.

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Luc Maisonobe
preparing RC4

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Luc Maisonobe
updated doap with latest revisions

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Luc Maisonobe
adding missing link for 3.2 javadoc

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Luc Maisonobe
Reverting pom version after tag creation.

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Luc Maisonobe
Bumping version for 3.2 release candidate 3.

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ca85bc1345e4475c134f653cf6931fd4315c6492
1364648272
Luc Maisonobe
Improved reporting section in pom.xml.

The Apache RAT plugin was configured in the build section instead of the
reporting section, so it did not automatically used our local
configuration.

The checkstyle anf findbugs plugins were updated to recent versions,
with some adaptation to prevent double entries.

The CPD plugin has been temporarily disabled because in 3.X it detects
huge duplications, which is true but misleading, as the duplications are
a consequence of our upward compatibility policy.

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Luc Maisonobe
Missing new lines at end of file.

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Phil Steitz
Used template, fixed title.

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Phil Steitz
Minor edit / format improvement to description.

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Phil Steitz
Javadoc fixes.

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Minor edits to description.

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Phil Steitz
Javadoc fix.

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Luc Maisonobe
Reverting version to 3.2-SNAPSHOT after tag creation.

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Luc Maisonobe
Creating RC2 for release 3.2.

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Luc Maisonobe
Fixed missing change in release notes.

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Luc Maisonobe
Reverting version number back to SNAPSHOT.

We will bump it to 3.3-SNAPSHOT later on, when release candidate vote
will be over.

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Luc Maisonobe
Bumping version number for official release.

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Luc Maisonobe
Added description of main 3.2 features in the changelog.

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Luc Maisonobe
Fixed findbugs warnings.

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Luc Maisonobe
Removed unused import.

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Luc Maisonobe
Preparing 3.2 release.

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Luc Maisonobe
Fixe findbugs false positive.

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Luc Maisonobe
Fixed findbugs warning.

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Luc Maisonobe
Fixed PMD warnings.

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Phil Steitz
Small javdoc edits.

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Phil Steitz
Small edits.

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Phil Steitz
Fixed javadoc typos.

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Phil Steitz
Small edits.

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Luc Maisonobe
Added missing @since 3.2.

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Phil Steitz
Made static fields static.

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Phil Steitz
Fixed javadoc errors.

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Phil Steitz
Give Evan credit for recent patch and add him to contributors.

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Luc Maisonobe
Spaces.

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Luc Maisonobe
Fixed inverse cumulative probability for uniform distribution.

JIRA: MATH-957

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Luc Maisonobe
Adding missing headers.

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Thomas Neidhart
Added findbugs exlude filter for new DoublePoint class.

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Thomas Neidhart
[MATH-917] updated changes.xml

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Thomas Neidhart
[MATH-917] deprecated old stat.clustering package.

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Thomas Neidhart
Add missing closing tag.

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Thomas Neidhart
Add clarification about default distance measure to javadoc.

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Thomas Neidhart
[MATH-917] Refactored clustering package to include more distance measures.

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Thomas Neidhart
[MATH-891] SpearmansCorrelation now works correctly when provided with a NaturalRanking with NaNStrategy.REMOVED.

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Luc Maisonobe
Replaced mask constant by explicit local constants.

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Gilles Sadowski
MATH-956
Replaced hard-coded numbers with constants from class "Precision".


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Luc Maisonobe
Fixed loading of test file when path contains a space.

JIRA:MATH-955

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Luc Maisonobe
FastMath.abs() without branching for float and double primitive types.

JIRA: MATH-954

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1364226451
Luc Maisonobe
Fixed tests so they do not use equals on top level classes.

Patch submitted by Jared Becksfort.

JIRA: MATH-817

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Luc Maisonobe
Improved speed of FastMath.abs methods, by removing branching.

JIRA: MATH-954

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1364206791
Luc Maisonobe
Improved speed of several FastMath methods.

Double.doubleToLongBits replaced with Double.doubleToRawLongBits at
several places.

JIRA: MATH-953

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1363978558
Luc Maisonobe
Fixed Complex.reciprocal() for zero argument.

JIRA: MATH-934

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1363974567
Sebastian Bazley
Fix up URLs so they point to actual sites; this allows relative URLs to work properly

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1363969517
Luc Maisonobe
Improved speed of FastMath copysign methods.

JIRA: MATH-951

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Luc Maisonobe
Added change for MATH-817.

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1363968346
Luc Maisonobe
Clarified origin of the class.

The original comments seemed to show the class was created from
Mixtools, which is GPL code. As per discussion on the JIRA issue
MATH-817 (see https://issues.apache.org/jira/browse/MATH-817), it
appears it is original work and NOT a derived work from Mixtools.
In fact, Mixtools was used mainly to verify the results and generate
some reference data (see the Junit test cases). Neither the code nor the
API from Mixtools were used.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1459876 13f79535-47bb-0310-9956-ffa450edef68

8451c587a97705211072a3490cac911c796f05d1
:100644 100644 a4919e3c647a16e4c6a2b6ab81b0a31c014c4769 2ee444702453821c19e35e0e1134eef9aaa5a2b6 M	src/main/java/org/apache/commons/math3/distribution/fitting/MultivariateNormalMixtureExpectationMaximization.java

f5e42b415e54783ee2fa013e806b3cf18c7a4af1
1363968314
Luc Maisonobe
Added missing package-info.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1459874 13f79535-47bb-0310-9956-ffa450edef68

f5e42b415e54783ee2fa013e806b3cf18c7a4af1
:000000 100644 0000000000000000000000000000000000000000 aa95c6dbfeb890db31539b49beb05d50d73be21c A	src/main/java/org/apache/commons/math3/distribution/fitting/package-info.java

437df27977baeb5b4eddb4964c756e5072eb2c98
1363953491
Gilles Sadowski
Typos.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1459739 13f79535-47bb-0310-9956-ffa450edef68

437df27977baeb5b4eddb4964c756e5072eb2c98
:100644 100644 585df2915b8df3c1f333e92eaafa864d1191ef88 66ddfdebe30a196acd60e58338ba50d7ef7d1e41 M	src/main/java/org/apache/commons/math3/analysis/interpolation/UnivariatePeriodicInterpolator.java

00298bf6c182e6e4ce45fd76f59d34a167092eb5
1363904508
Thomas Neidhart
Fix typo.

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00298bf6c182e6e4ce45fd76f59d34a167092eb5
:100644 100644 4f27607f304e2b2aed3a482e9c1b91b0d8cb2e43 6e51085f72b9ea300580f3f7b0b7a13a85565fc2 M	src/main/java/org/apache/commons/math3/primes/Primes.java

bf7b5c1514465d56a414e7b6b8b2a8e77843143d
1363904312
Thomas Neidhart
Formatting und removal of unused import.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1459552 13f79535-47bb-0310-9956-ffa450edef68

bf7b5c1514465d56a414e7b6b8b2a8e77843143d
:100644 100644 fb798c3fdfd0e53ffffdcb6427941134d252b1a6 a4919e3c647a16e4c6a2b6ab81b0a31c014c4769 M	src/main/java/org/apache/commons/math3/distribution/fitting/MultivariateNormalMixtureExpectationMaximization.java

297e9fd15a60c0eaa8f8e9c30978af682d172a05
1363904264
Thomas Neidhart
Add missing version/since tags, throws clauses.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1459551 13f79535-47bb-0310-9956-ffa450edef68

297e9fd15a60c0eaa8f8e9c30978af682d172a05
:100644 100644 d052fb1b5e8bd4bfbc9501205f20f2229977e800 218255ad9762aef78b74292fa453cba118b501e7 M	src/main/java/org/apache/commons/math3/distribution/MixtureMultivariateNormalDistribution.java

ce371c9f698cb07739343857ae950931893f0742
1363901085
Thomas Neidhart
[MATH-862] Correct fix for matrix dimension check in copySubMatrix.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1459534 13f79535-47bb-0310-9956-ffa450edef68

ce371c9f698cb07739343857ae950931893f0742
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8b0fb3da9bc59bbbc08a7cf44fe57310ec788eb9
1363882922
Gilles Sadowski
MATH-817
Algorithem for fitting of a multivariate normal distributions mixture
(implemented by Jared Becksfort).
Added "MixtureMultivariateNormalDistribution" class as "syntactic sugar".
Two unit tests are currently set to "@Ignore" (because they rely on "equals"
which the patch did not seem to implement "equals" consistently).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1459382 13f79535-47bb-0310-9956-ffa450edef68

8b0fb3da9bc59bbbc08a7cf44fe57310ec788eb9
:000000 100644 0000000000000000000000000000000000000000 d052fb1b5e8bd4bfbc9501205f20f2229977e800 A	src/main/java/org/apache/commons/math3/distribution/MixtureMultivariateNormalDistribution.java
:000000 100644 0000000000000000000000000000000000000000 fb798c3fdfd0e53ffffdcb6427941134d252b1a6 A	src/main/java/org/apache/commons/math3/distribution/fitting/MultivariateNormalMixtureExpectationMaximization.java
:000000 100644 0000000000000000000000000000000000000000 2a18fb86f01103db16bfc005e2dc4cea0d72be95 A	src/test/java/org/apache/commons/math3/distribution/fitting/MultivariateNormalMixtureExpectationMaximizationTest.java

6d7fe5d117da73a743e4b799d364cfea05a3f026
1363850132
Thomas Neidhart
Revert fix for MATH-862: it created test regressions.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1459171 13f79535-47bb-0310-9956-ffa450edef68

6d7fe5d117da73a743e4b799d364cfea05a3f026
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:100644 100644 19cad4991b79be50c42a88741c13333ae663c400 cb5bbdac108f4d2960c64665bc1ed4e0ec5d5b6f M	src/test/java/org/apache/commons/math3/linear/Array2DRowRealMatrixTest.java

bd45bbd99e76df03745ee7edf0ca069245594449
1363818249
Thomas Neidhart
Fix typo.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1459082 13f79535-47bb-0310-9956-ffa450edef68

bd45bbd99e76df03745ee7edf0ca069245594449
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1793c8d0ef8746462eb0f8eaf8207026e98570b7
1363818114
Thomas Neidhart
[MATH-862] check for rectangular input arrays in copySubMatrix methods.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1459081 13f79535-47bb-0310-9956-ffa450edef68

1793c8d0ef8746462eb0f8eaf8207026e98570b7
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195787704514f03e7fd64519a7a2920f2c87c5ee
1363723991
Luc Maisonobe
Fixed checkstyle warnings.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1458491 13f79535-47bb-0310-9956-ffa450edef68

195787704514f03e7fd64519a7a2920f2c87c5ee
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7de10c89ebae35cfdc85e9a5b9d7e1ef038bca3b
1363722483
Luc Maisonobe
Removed development statement.

I'm really sorry for this...

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1458478 13f79535-47bb-0310-9956-ffa450edef68

7de10c89ebae35cfdc85e9a5b9d7e1ef038bca3b
:100644 100644 bb85245cfed20bfbaa134cfdc8ef40366c709e16 155c46adb4ecc8975c32771d523c4242a534e77d M	src/test/java/org/apache/commons/math3/ode/events/EventFilterTest.java

196a43846a96308341617ca05fd3035de6fdb520
1363721548
Luc Maisonobe
Removed a spurious @Override.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1458468 13f79535-47bb-0310-9956-ffa450edef68

196a43846a96308341617ca05fd3035de6fdb520
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419a052c6842192e78f747d9f5af619c2ca56e78
1363704690
Gilles Sadowski
MATH-949
Increment iteration counter.
By default, the maximum number of iterations is "Integer.MAX_VALUE".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1458323 13f79535-47bb-0310-9956-ffa450edef68

419a052c6842192e78f747d9f5af619c2ca56e78
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:100644 100644 3d16aa8a73cb9f5062705adb25f547f9495b0ecb 0dd644e22f7a4c4d1b2a01c9772736db4e3be2d2 M	src/main/java/org/apache/commons/math3/optim/nonlinear/scalar/noderiv/SimplexOptimizer.java
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:100644 100644 c9e9009c69a3cf6a755ec10cd88c12e2f6a1f911 931c226dab448f8fab9eff3d299643bd0034c9ac M	src/test/java/org/apache/commons/math3/optim/nonlinear/scalar/noderiv/SimplexOptimizerMultiDirectionalTest.java
:100644 100644 fdc187a623be76d5644b06016f361a31530a0b64 d51025d7e846e24bdd41bc5bafe88818b2688e2c M	src/test/java/org/apache/commons/math3/optim/nonlinear/scalar/noderiv/SimplexOptimizerNelderMeadTest.java
:100644 100644 cc86ae0f4e39312bd469af98e3b40b554be33e8c 942b472f247bccfde7f9b8b595ff33a69c6206f7 M	src/test/java/org/apache/commons/math3/optim/nonlinear/vector/jacobian/AbstractLeastSquaresOptimizerAbstractTest.java

6c9d06a658d87c01fb02d1efce15bf6b74eb7aab
1363702198
Luc Maisonobe
Added a way to trigger only increasing or decreasing events in ODE.

The method used is completely different from what was suggested in the
request report. It is fully compatible with previous versions and most
importantly has no side effects on users that do not need this feature,
as it is based on an upstream filtering of the event definition
function. The events detection logic is not modified and it fact it does
not even know events are filtered before they are detected.

JIRA: MATH-811

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1458298 13f79535-47bb-0310-9956-ffa450edef68

6c9d06a658d87c01fb02d1efce15bf6b74eb7aab
:100644 100644 1c5daf33d36b5c6d672f2cd364cdb90cff74198c 43c776634ce2be05b971f7022e1a92030d1515ab M	src/changes/changes.xml
:000000 100644 0000000000000000000000000000000000000000 0c293e25fc8e0a122f6fa1e4b0821358417c6e58 A	src/main/java/org/apache/commons/math3/ode/events/EventFilter.java
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:000000 100644 0000000000000000000000000000000000000000 10902937e5cd74b597577913fc9e28a059af0153 A	src/main/java/org/apache/commons/math3/ode/events/Transformer.java
:000000 100644 0000000000000000000000000000000000000000 bb85245cfed20bfbaa134cfdc8ef40366c709e16 A	src/test/java/org/apache/commons/math3/ode/events/EventFilterTest.java

1cd68eed57febf806c385bf04a596b922f4c1964
1363702148
Luc Maisonobe
Fixed missing update in ODE event handlers.

When a RESET_STATE was triggered, event states for events not triggered
in the same step were not updated properly.

JIRA: MATH-950

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1458294 13f79535-47bb-0310-9956-ffa450edef68

1cd68eed57febf806c385bf04a596b922f4c1964
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:100644 100644 77b7197324259578dd54a24719a7ec5c0cceddf3 fcba93c8164657177a3004383e7cf3cb6afc568b M	src/test/java/org/apache/commons/math3/ode/nonstiff/DormandPrince853IntegratorTest.java

96cd02e82c219349086092cdc2c5a450efc8be13
1363540531
Phil Steitz
Replaced tests predating inference package with Chi-square tests. JIRA: MATH-598.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1457491 13f79535-47bb-0310-9956-ffa450edef68

96cd02e82c219349086092cdc2c5a450efc8be13
:100644 100644 9eeac3ab8e2c2a9767c6612fcea354a9d062be73 c7c9ecb8f76742b957440ef11d07e98211629c43 M	src/test/java/org/apache/commons/math3/random/RandomDataGeneratorTest.java

792a0be1c3c434d542d01ab38a9cc3ccd63e8671
1363494484
Phil Steitz
Made EmpiricalDistribution smoothing kernel pluggable.
To enable subclasses to provide the enclosing distribution's underlying RandomGenerator
to distribution constructors, two more changes were required:
* In EmpiricalDistribution, the RandomDataGenerator field (randomData) was changed
  from private to protected.
* The private getRan() method in RandomDataGenerator returning the underlying
  RandomGenerator was renamed getRandomGenerator and made public.
JIRA: MATH-671

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792a0be1c3c434d542d01ab38a9cc3ccd63e8671
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f227366d85f8cafb4f8f168ba77737f64950e057
1363384145
Phil Steitz
Dropped System.out.println from test code.

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f227366d85f8cafb4f8f168ba77737f64950e057
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a90e6893e83cbfecd4ae731e5fb0f5defe4003d3
1363383041
Phil Steitz
Added array-scaling methods to MathArrays. Patch provided by Jared Becksfort. JIRA: MATH-877

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a90e6893e83cbfecd4ae731e5fb0f5defe4003d3
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d037aa5b146307b76c48fb911f305c51fcee9612
1363355727
Luc Maisonobe
Allow direct use of SummaryStatistics in one-way ANOVA.

Patch provided by Peter Andrews.

JIRA: MATH-877

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d037aa5b146307b76c48fb911f305c51fcee9612
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b1641402af2dbbca2788c09a8f055b168a599e8b
1363355692
Luc Maisonobe
Added missing headers.

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b1641402af2dbbca2788c09a8f055b168a599e8b
:100644 100644 01bf03a48e5524ccb3866e8982e74ecc3519f00f 925b6626e6e015a4571cec1deb2d7e50b700f1f5 M	src/main/java/org/apache/commons/math3/distribution/LevyDistribution.java
:100644 100644 12a0a338a6f9d568e634dc8f44ac70b758d2e280 45506971dfb11f791b49dc37255fbe3dd6632723 M	src/test/java/org/apache/commons/math3/distribution/LevyDistributionTest.java

2cbe8ffdc2cdc1f913c1926e202ac9c04be3e23f
1363355660
Luc Maisonobe
Fixed javadoc errors.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1456956 13f79535-47bb-0310-9956-ffa450edef68

2cbe8ffdc2cdc1f913c1926e202ac9c04be3e23f
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acb3a83d48b169febcb52587d4798e5e369f0290
1363350875
Luc Maisonobe
Fixed infinite loop when NaN occurs in singular value decomposition.

JIRA: MATH-947

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1456931 13f79535-47bb-0310-9956-ffa450edef68

acb3a83d48b169febcb52587d4798e5e369f0290
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3f96c7ac9dafc82265a6dd3e145a21448af14282
1363347554
Luc Maisonobe
Added the Lévy distribution.

The patch from Andrew Waterman has been added, with several fixes and
extensions.

JIRA: MATH-460

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1456907 13f79535-47bb-0310-9956-ffa450edef68

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22362f49c9a8d772707a821f48654a3655ff4f13
1363347503
Luc Maisonobe
Use erfinv in the normal distribution.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1456906 13f79535-47bb-0310-9956-ffa450edef68

22362f49c9a8d772707a821f48654a3655ff4f13
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12dfb9fbae76df133a7635eb246bc050c0ec8b0b
1363347455
Luc Maisonobe
Inverse error function and inverse complementary error function.

JIRA: MATH-948

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1456905 13f79535-47bb-0310-9956-ffa450edef68

12dfb9fbae76df133a7635eb246bc050c0ec8b0b
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ca5886b32b1367d45a7b2d1c2516139477d7dc42
1363323094
Phil Steitz
Renamed Discrete*Distribution to Enumerated*Distribution, improved javadoc, made some exceptions more precise. JIRA: MATH-942.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1456769 13f79535-47bb-0310-9956-ffa450edef68

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565d8d16ef5ef46d20158303ca5407aeffde1887
1363212127
Thomas Neidhart
Fix Clirr error wrt return type of DiagonalMatrix#copy.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1456179 13f79535-47bb-0310-9956-ffa450edef68

565d8d16ef5ef46d20158303ca5407aeffde1887
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13e1e3784a6285a420b62223100bac9b34c84cb3
1363179346
Luc Maisonobe
Extended ranges for FastMath performance tests.

JIRA: MATH-580

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1455921 13f79535-47bb-0310-9956-ffa450edef68

13e1e3784a6285a420b62223100bac9b34c84cb3
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1e1b887f3352b119d829b702fdaffd7c74be6f3e
1363174386
Luc Maisonobe
Finalized implementation of diagonal matrix.

JIRA: MATH-925

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1455890 13f79535-47bb-0310-9956-ffa450edef68

1e1b887f3352b119d829b702fdaffd7c74be6f3e
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94cf734ee3ceb7a2d112acf9533bc86359b5ff73
1363123926
Thomas Neidhart
Formatting, replace <, > with html entities.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1455722 13f79535-47bb-0310-9956-ffa450edef68

94cf734ee3ceb7a2d112acf9533bc86359b5ff73
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eaf773add8cd8607532296330864546ab20ca4c7
1363122741
Thomas Neidhart
Fix findbugs warnings: non-serializable field, minor formatting.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1455716 13f79535-47bb-0310-9956-ffa450edef68

eaf773add8cd8607532296330864546ab20ca4c7
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d6efeb56e44b1172cfd1ead6921550a5a6a36910
1363121294
Thomas Neidhart
Fix checkstyle warning: argument hides field.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1455704 13f79535-47bb-0310-9956-ffa450edef68

d6efeb56e44b1172cfd1ead6921550a5a6a36910
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6ea2bf432feaa0959a8b553087b93466c70600f3
1363121183
Thomas Neidhart
Add null check to merge methods, refactor code a bit.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1455703 13f79535-47bb-0310-9956-ffa450edef68

6ea2bf432feaa0959a8b553087b93466c70600f3
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a6e271ccacba30012f94ab9378e57e4540eecea2
1363108132
Luc Maisonobe
Added rank revealing QR decomposition.

Patch applied after conversion to current status and slight adaptations.

JIRA: MATH-630

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1455627 13f79535-47bb-0310-9956-ffa450edef68

a6e271ccacba30012f94ab9378e57e4540eecea2
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889ff1c79beb442164ffcb0aaf666dca896a9eec
1363024512
Luc Maisonobe
ArrayFieldVector can now be constructed from any FieldVector.

Thanks to Arne Plöse.

JIRA: MATH-570

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1455260 13f79535-47bb-0310-9956-ffa450edef68

889ff1c79beb442164ffcb0aaf666dca896a9eec
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c11dee306d190276ad812511a8f4b6e75dbf5a39
1363021241
Luc Maisonobe
Improved checking of null vector elements.

The suggestions by Sébastien have been added and the second
implementation of FieldVector (SparseFieldVector) has been adapted
accordingly, despite it is deprecated.

JIRA: MATH-861

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1455233 13f79535-47bb-0310-9956-ffa450edef68

c11dee306d190276ad812511a8f4b6e75dbf5a39
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5793cad49eab2b33606d3193e984ba7b4782b69d
1363016754
Luc Maisonobe
Filled throws clauses for the analysis package.

JIRA: MATH-854

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1455194 13f79535-47bb-0310-9956-ffa450edef68

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493b86584905df3d1f0b1ab0d7cfc0de1291de5b
1362991032
Luc Maisonobe
Removed the log10 declaration in RealFieldElement interface.

This method introduced a binary incompatibility as one implementing
class (Dfp) did not have the proper return type and had to be changed.
The method will be added back in the interface for 4.0, when it will be
allowed to change the return type for Dfp.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1455053 13f79535-47bb-0310-9956-ffa450edef68

493b86584905df3d1f0b1ab0d7cfc0de1291de5b
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5e427092fa7d2216cccfef84c7d6751a16e21cdb
1362978282
Phil Steitz
Removed implementation-specific doco from interface javadoc.  The impl notes are already in the impl class docs (at least one of them).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1455000 13f79535-47bb-0310-9956-ffa450edef68

5e427092fa7d2216cccfef84c7d6751a16e21cdb
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7a5cb6e7e1fceab84b92674d1620e76ad60919c2
1362958881
Sebastian Bazley
Add some recent tags

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1454961 13f79535-47bb-0310-9956-ffa450edef68

7a5cb6e7e1fceab84b92674d1620e76ad60919c2
9a59bc116596824147d8b9e976e0f3e94943d945
1362951260
Thomas Neidhart
[MATH-942] Add sample(int, T[]) method, add missing since tags.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1454925 13f79535-47bb-0310-9956-ffa450edef68

9a59bc116596824147d8b9e976e0f3e94943d945
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9aeffe4d3d4057e3bb0531c5c4ec273625df6308
1362949520
Luc Maisonobe
Added utilities for prime numbers.

Thanks to Sébastien Riou.

JIRA: MATH-845

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1454920 13f79535-47bb-0310-9956-ffa450edef68

9aeffe4d3d4057e3bb0531c5c4ec273625df6308
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ce22e657cd2b0e0797df53a9556e48dc41f33cae
1362948302
Luc Maisonobe
Fixed checkstyle error.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1454917 13f79535-47bb-0310-9956-ffa450edef68

ce22e657cd2b0e0797df53a9556e48dc41f33cae
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c5806b075ba06ac3d3f4049e43149cb65d8915c0
1362944762
Luc Maisonobe
Removed wrong explanation.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1454904 13f79535-47bb-0310-9956-ffa450edef68

c5806b075ba06ac3d3f4049e43149cb65d8915c0
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c5a4a4f0e6e2d19487c50179a5a33af937ce9a0d
1362944671
Luc Maisonobe
Renamed ExtendedFieldElement into RealFieldElement.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1454903 13f79535-47bb-0310-9956-ffa450edef68

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56ba368f5c6a20cb31654f75ac8bda63d24f4842
1362942174
Luc Maisonobe
Fixed generation of long random numbers between two bounds.

We now directly use discrete raw values to build the int/double instead
of relying on floating point arithmetic.

JIRA: MATH-936

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1454897 13f79535-47bb-0310-9956-ffa450edef68

56ba368f5c6a20cb31654f75ac8bda63d24f4842
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2dda4cfe42c2205f88fa1397a15d9adec4b124d6
1362933668
Luc Maisonobe
Fixed CLIRR error, by putting back protected methods.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1454876 13f79535-47bb-0310-9956-ffa450edef68

2dda4cfe42c2205f88fa1397a15d9adec4b124d6
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1fd0f7abc91261dea4257a511e6460301cdafc3f
1362927378
Thomas Neidhart
Added change entry for tests already added in 3.0

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1454861 13f79535-47bb-0310-9956-ffa450edef68

1fd0f7abc91261dea4257a511e6460301cdafc3f
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f895506d7c7fefba7c285145f95cc114d7dca74b
1362926361
Thomas Neidhart
Add exclude filters for false-positive: serialization is handled by an inner class via readResolve.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1454856 13f79535-47bb-0310-9956-ffa450edef68

f895506d7c7fefba7c285145f95cc114d7dca74b
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4ca845c8360b95c7008a760e4edc65ce59930282
1362920828
Luc Maisonobe
Fixed warnings.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1454847 13f79535-47bb-0310-9956-ffa450edef68

4ca845c8360b95c7008a760e4edc65ce59930282
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d361da00de98fe7d01d1d1113487ed96a7f1f9fe
1362920524
Luc Maisonobe
Test new RandomDataGenerator class rather than deprecated RandomImpl.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1454846 13f79535-47bb-0310-9956-ffa450edef68

d361da00de98fe7d01d1d1113487ed96a7f1f9fe
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196e63174afdb3df1529c1b97bb8437b16831cc3
1362916860
Luc Maisonobe
Fixed creation of generic array.

Thanks to Piotr Wydrych.

JIRA: MATH-942

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1454840 13f79535-47bb-0310-9956-ffa450edef68

196e63174afdb3df1529c1b97bb8437b16831cc3
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55046479fe33e47a002ab4f4949bd944ba70d37d
1362850650
Luc Maisonobe
Check bounds in multi-start vector optimizers.

JIRA: MATH-914

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1454746 13f79535-47bb-0310-9956-ffa450edef68

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3078642226f4c7353818edf283084b4aff96fc11
1362840619
Luc Maisonobe
Added exclude filters for RAT.

Many Apache license headers have been added in previous commits
(r1454703, r1454718, r1454719, r1454721, r1454722, r1454723). However
some test data files cannot be changed (empty file, files published by
by NIST), and in fact the content of this files is public, so they
cannot be subject to Apache license, so they are excluded from the RAT
report.

JIRA: MATH-921

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1454726 13f79535-47bb-0310-9956-ffa450edef68

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a58df6c72b9751b63f6acfab45c79a1b6881e7cc
1362840021
Luc Maisonobe
Added Apache license headers.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1454723 13f79535-47bb-0310-9956-ffa450edef68

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Luc Maisonobe
Added Apache license header.

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Luc Maisonobe
Added Apache license headers.

The header has been added to data files, and the corresponding test has
been updated to ignore the header lines.

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Luc Maisonobe
Added Apache license headers.

The header has been added to test files, and the corresponding test
updated to ignore the header lines.

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Luc Maisonobe
Added missing Apache license headers.

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1362836167
Luc Maisonobe
removed .svnignore file that made RAT unhappy because of missing license header.
The svn:ignore property is still set on the directory, so the file was superfluous.

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Luc Maisonobe
Fixed javadoc errors.

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Luc Maisonobe
Fixed false positive findbugs warning.

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Luc Maisonobe
Fixed checkstyle warnings.

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Luc Maisonobe
Removed redundant public modifiers.

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Luc Maisonobe
Added missing header.

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1362758369
Luc Maisonobe
Added discrete distributions.

Patch contributed by Piotr Wydrych.

JIRA: MATH-941

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Thomas Neidhart
Make more specific exclude filter for download cgi.

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Thomas Neidhart
Put back in the -Prelease profile.

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Thomas Neidhart
Exclude download cgi from source distribution.

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Thomas Neidhart
Fix first step in release howto.

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1362567573
Luc Maisonobe
Fixed abstract test class naming that broke ant builds.

JIRA: MATH-940

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1362565791
Luc Maisonobe
Allow covariance to be computed for one-dimensional variables.

JIRA: MATH-939

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1362560008
Luc Maisonobe
Fixed accuracy of 3D Line.revert().

JIRA: MATH-938

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Thomas Neidhart
Fix typo.

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1362159406
Luc Maisonobe
Improved javadoc to explain how switching functions should behave across
events in ODE events detection.

JIRA: MATH-937

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1361922720
Olivier Lamy
restore download cgi

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Olivier Lamy
fix links to previous release javadocs

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Olivier Lamy
use last parent

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Luc Maisonobe
Brought back some useful static methods.

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Luc Maisonobe
Added derivatives evaluation for field Hermite interpolator.

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Luc Maisonobe
New test.

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Luc Maisonobe
Removed development traces.

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Luc Maisonobe
Improved test coverage.

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Luc Maisonobe
Fixed definition of remainder and added missing copySign signature.

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Luc Maisonobe
Added Hermite interpolator for ExtendFieldElement instances.

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1361733197
Luc Maisonobe
Added a new ExtendedFieldElement interface.

This interface represents anything that is real number like. It is
implemented by Decimal64, Dfp and DerivativeStructure. The purpose of
this interface is to be able to set up general algorithms that apply on
real numbers (maybe complex too) and use genericity.

A first use case corresponds to 3D geometry objects (Vector3D and
Rotation).

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1361732780
Luc Maisonobe
Set up array building methods for generic types.

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Luc Maisonobe
Added a conversion from RotationDS to Rotation.

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Luc Maisonobe
Typo.

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Luc Maisonobe
Added partial derivatives computation for 3D vectors and rotations.

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Luc Maisonobe
Improved test coverage.

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Luc Maisonobe
Improved test coverage.

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7e2ffcc9034de41d7787f0b33b5670474f7a10de
1360916411
Luc Maisonobe
Fixed DerivativeStructure.atan2 for special cases when both arguments
are +/-0.

JIRA: MATH-935

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Luc Maisonobe
Added tests.

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Luc Maisonobe
Added accurate linear combinations for DerivativeStructure instances.

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Thomas Neidhart
Remove trailing space.

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Gilles Sadowski
MATH-933
Throw exception from optimizers that do not support simple bounds.
Changing visibility of "parseOptimizationData" method to "protected" in order
to allow the parent class to parse its data before the subclass (and thus
providing more flexibility: the subclass is able check input consistency at
the options parsing step).


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Luc Maisonobe
Fix typo and avoid computing an unused element.

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Luc Maisonobe
Added conversion of gradients and Hessians from spherical to Cartesian
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Gilles Sadowski
MATH-933
Throw exception when bounds are passed to an algorithm that does not
support them.


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Gilles Sadowski
MATH-931
Efficiency improvement and unit test (thanks to Sean Owen).


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developed by => developed at

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Thomas Neidhart
[MATH-930] Updated changes.xml, added unit test.

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Thomas Neidhart
[MATH-930] Add info the class javadoc wrt convergence criteria, add another ctor to only adjust the epsilon value.

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Thomas Neidhart
Add missing svn:keywords properties.

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Olivier Lamy
configure svnpubsub

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Gilles Sadowski
MATH-929
Fixed truncated value. Thanks to Piotr Wydrych.
Added unit test: comparing density values with univariate
normal distribution.


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Gilles Sadowski
Updated "changes.xml".


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Phil Steitz
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Phil Steitz
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Gilles Sadowski
Document update.


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Gilles Sadowski
Copyright.


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Gilles Sadowski
Preparing release 3.1.1.


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Gilles Sadowski
Preparing release 3.1.1.


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Gilles Sadowski
Preparing release 3.1.1.


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Gilles Sadowski
Unused variable.


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Gilles Sadowski
Unit tests for "DiagonalMatrix".


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Gilles Sadowski
Fixed "CheckStyle" warnings.


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Sebastian Bazley
Remove obsolete comment (override no longer needed)

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Gilles Sadowski
MATH-876

Clean solution provided by Niall Pemberton.


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Gilles Sadowski
MATH-927
Made "BitsStreamGenerator" class "Serializable" to allow cloning of
subclasses. Added cloning test for all "RealDistribution" classes.
Thanks to Dennis Hendriks.


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Gilles Sadowski
Added Jared Becksfort in the contributors list.


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Gilles Sadowski
MATH-925
Added "final" keyword.
Removed degenerate case (matrix with no data).
Used constructor chaining.


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Gilles Sadowski
Added a "Latest API" link to the site template (as suggested by Phil
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Phil Steitz
Dropped extraneous javadoc @param.

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Gilles Sadowski
Javadoc.


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Phil Steitz
Updated download page template to match deployed site.

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Phil Steitz
Documented commons.componentid ambiguiity and workaround.

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Gilles Sadowski
MATH-924
Avoid memory exhaustion for large number of unclorrelated observations.


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Gilles Sadowski
MATH-924
Using a diagonal matrix to avoid exhausting memory.


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Gilles Sadowski
MATH-925
Minimal implementation of a diagonal matrix. Unit tests are lacking.


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Luc Maisonobe
reverting commit introduced in r1426616

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Luc Maisonobe
Added vector-only weights for multivariate vector optimizers.

JIRA: MATH-924

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Update version tag.


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exclude idea files

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Typo in method names.


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Documentation.


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Mini-howto for releasing Commons Math.


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Gilles Sadowski
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Gilles Sadowski
MATH-757
Class was not thread-safe.
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Javadoc formatting.

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3418805029cd0d432670c2c58aaab65a8e0c0219
1355581212
Luc Maisonobe
Added documentation for differentiation in user guide.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1422251 13f79535-47bb-0310-9956-ffa450edef68

3418805029cd0d432670c2c58aaab65a8e0c0219
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:100644 100644 46a5651496732b416630b1cf16abd60c1cb93a8a 771c86770b198ec9653f93616b15c33346347325 M	src/site/xdoc/userguide/index.xml

9b6e5120b39a0e7ca0db6a8f11bfb8dea39d69e0
1355573473
Gilles Sadowski
MATH-874
Javadoc (deprecation tag).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1422230 13f79535-47bb-0310-9956-ffa450edef68

9b6e5120b39a0e7ca0db6a8f11bfb8dea39d69e0
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715bce682f1469fade8b5160ab6e022a0ca9bcbf
1355571155
Gilles Sadowski
MATH-874
Added "@Deprecated" annotation.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1422223 13f79535-47bb-0310-9956-ffa450edef68

715bce682f1469fade8b5160ab6e022a0ca9bcbf
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c942b0f63fccbcf6b32afda27077d2eee45ca92c
1355566998
Luc Maisonobe
Fixed a missing element in the solvers table (user-guide).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1422214 13f79535-47bb-0310-9956-ffa450edef68

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dbefec8360f55ad230df9ac1c345aca80121f147
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Phil Steitz
Added missing @since tags.

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16899c1d935caa88b693317a0cd5a820aae956e0
1355526070
Gilles Sadowski
Release notes for 3.1.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1422137 13f79535-47bb-0310-9956-ffa450edef68

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1355523154
Gilles Sadowski
Replaced deprecated "RandomDataImpl" with "RandomDataGenerator".
Added private constructor.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1422123 13f79535-47bb-0310-9956-ffa450edef68

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2b4dc4da0dc89d767abdbd03bdf9261e1b3a43fe
1355521641
Gilles Sadowski
Deprecation.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1422107 13f79535-47bb-0310-9956-ffa450edef68

2b4dc4da0dc89d767abdbd03bdf9261e1b3a43fe
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b003aab47e96a6d467c3b27334c84460789b0533
1355502503
Phil Steitz
Reverted incompatible changes made in r1420006.
Fixed javadoc error in EmpiricalDistribution class javadoc.
Deprecated constructors taking RandomDataImpl instances in EmpiricalDistribution, ValueServer.  These constructors predate RandomGenerator, which should be used directly as the source of random data for these classes.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1421968 13f79535-47bb-0310-9956-ffa450edef68

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95ffd4c253513ca9dd7f73d39e8e0bdb1c14b861
1355500412
Luc Maisonobe
Fixed PMD warnings.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1421949 13f79535-47bb-0310-9956-ffa450edef68

95ffd4c253513ca9dd7f73d39e8e0bdb1c14b861
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d10ba4dff33c6af48ee62582e6bba1145a681881
1355497518
Gilles Sadowski
Javadoc.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1421917 13f79535-47bb-0310-9956-ffa450edef68

d10ba4dff33c6af48ee62582e6bba1145a681881
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3954b85348837e7e2b9dfad5726a2ba5ee834df2
1355497184
Gilles Sadowski
MATH-916
Restore backwards-compatibility (for release 3.1).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1421911 13f79535-47bb-0310-9956-ffa450edef68

3954b85348837e7e2b9dfad5726a2ba5ee834df2
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e23eb4d782b2faca29e8c517564bcb3938516d28
1355497076
Gilles Sadowski
MATH-915
Restore backwards-compatibility (for release 3.1).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1421910 13f79535-47bb-0310-9956-ffa450edef68

e23eb4d782b2faca29e8c517564bcb3938516d28
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e4d49aa0ed81bfffa943d346d404adad452b72da
1355427957
Thomas Neidhart
Fix PMD warnings by suppressing or removing unused imports.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1421448 13f79535-47bb-0310-9956-ffa450edef68

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b0799d99bab34004466d10f8767ba2241eb73734
1355426335
Thomas Neidhart
Added findbugs exclude filter for class copied to the new optim package.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1421434 13f79535-47bb-0310-9956-ffa450edef68

b0799d99bab34004466d10f8767ba2241eb73734
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75e6ddd2c01b037486157c878ce60eb20b64ef82
1355405944
Gilles Sadowski
Removed inconsistent null checks (reported by FindBugs).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1421290 13f79535-47bb-0310-9956-ffa450edef68

75e6ddd2c01b037486157c878ce60eb20b64ef82
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b68a5bed0a567093b58b96a8144f4949c38cf9a1
1355405396
Gilles Sadowski
MATH-914
Markers to indicate the bug location.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1421287 13f79535-47bb-0310-9956-ffa450edef68

b68a5bed0a567093b58b96a8144f4949c38cf9a1
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4f5a775568f6bc3622331a970134149784ca29f7
1355404077
Gilles Sadowski
Unused argument (found by PMD).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1421280 13f79535-47bb-0310-9956-ffa450edef68

4f5a775568f6bc3622331a970134149784ca29f7
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f2796cfac99851f734037f246134f2e79165a255
1355402827
Gilles Sadowski
Unused argument (found by PMD).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1421263 13f79535-47bb-0310-9956-ffa450edef68

f2796cfac99851f734037f246134f2e79165a255
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31732f6483917852e8aa2ec2032b107578f853ba
1355402514
Gilles Sadowski
Removed unneeded "import" statements.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1421260 13f79535-47bb-0310-9956-ffa450edef68

31732f6483917852e8aa2ec2032b107578f853ba
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003bfee8e69da8a102b670997bfd6b4846523e8a
1355401923
Gilles Sadowski
Fixed bug found by PMD.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1421249 13f79535-47bb-0310-9956-ffa450edef68

003bfee8e69da8a102b670997bfd6b4846523e8a
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84eadc815b6984304194cdc592aa38823b7e24fa
1355360045
Gilles Sadowski
MATH-874
Moved "GoalType" and "ObjectiveFunction" to package
"o.a.c.m.optim.nonlinear.scalar".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1421054 13f79535-47bb-0310-9956-ffa450edef68

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107b3d9efae3e71652e7ee8a120ed374e941dd41
1355326055
Gilles Sadowski
MATH-874
Data files needed by some unit tests.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1420762 13f79535-47bb-0310-9956-ffa450edef68

107b3d9efae3e71652e7ee8a120ed374e941dd41
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7438d67178548010face682e2c82c5fee8acfc30
1355322937
Gilles Sadowski
Fixed wrong position of package description.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1420705 13f79535-47bb-0310-9956-ffa450edef68

7438d67178548010face682e2c82c5fee8acfc30
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6ec823b467a3daa3af7926b5e423660d6fd0cc1d
1355321902
Gilles Sadowski
MATH-874
Update "changes.xml".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1420693 13f79535-47bb-0310-9956-ffa450edef68

6ec823b467a3daa3af7926b5e423660d6fd0cc1d
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a3a1f9a217c2ac49927aa3364ecd2eee4079a29f
1355321438
Gilles Sadowski
MATH-874
Refactored of the contents of package "o.a.c.m.optimization"
into the new "o.a.c.m.optim" and "o.a.c.m.fitting" packages.
* All deprecated classes/fields/methods have been removed in the
  replacement packages.
* Simplified API: a single "optimize(OptimizationData... data)"
  for all optimizer types.
* Simplified class hierarchy, merged interfaces and abstract
  classes, only base classes are generic.
* The new classes do not use the "DerivativeStructure" type.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1420684 13f79535-47bb-0310-9956-ffa450edef68

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67017f3679660f547d50eee807d43583d3ee0b07
1355319635
Gilles Sadowski
Fixed "Clirr" error.


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1355319200
Gilles Sadowski
Javadoc.


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1355206208
Phil Steitz
Fixed javadoc error, replaced depreacated class.

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1355204166
Phil Steitz
Added RealDistribution methods to EmpiricalDistribution.  JIRA: MATH-672.

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1354603317
Sebastien Brisard
Javadoc: warning about private methods being accessed through reflection in
unit tests.


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a53f989a917c77a0598e6a73858d92f28af97064
1354563434
Thomas Neidhart
Change svn:keywords to {Id Revision} only

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64763c33b77376a74fb012071a665d6cbd4db6b7
1354479829
Luc Maisonobe
Added lower and upper boundaries to finite differences.

When a function is defined only on an interval, finite differences
should not attempt to compute sample points outside this interval. This
case is now detected properly and the sample is shifted if needed. This
may result in some loss of accuracy as the formula is not centered
anymore, but at least we should not get catastrophic errors or
exceptions.

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f79046fb436f5bd530f84a32e43c3bc9f5139a7f
1354476845
Thomas Neidhart
Added missing keywords.

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f79046fb436f5bd530f84a32e43c3bc9f5139a7f
5e3111062caedfd35362a6e53a5ad843ec81173f
1354476786
Thomas Neidhart
Added missing keywords.

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5e3111062caedfd35362a6e53a5ad843ec81173f
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1354474525
Thomas Neidhart
Add exclusion filter for new EuclideanDoublePoint.

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3b790508c134203bfc4ab7ed9e8da62d1455ec61
1354470219
Thomas Neidhart
Removed unused variables.

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fae5d64f623ae37d42f7c5dcadfa512fdc24643b
1354379277
Sebastien Brisard
Reverted changes accidentally committed.


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b734013b8ddaee84114f4c38bd13e9f5be6c6a73
1354379073
Sebastien Brisard
Replaced calls to deprecated Beta.logBeta(double, double, double, int) with
calls to Beta.logBeta(double, double).


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ccd13785629608a808348e0004a8620d5f2e3c3e
1354378092
Sebastien Brisard
Javadoc.


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7f9204f2bac7635197fbc2ca0f3910b5d7f117c1
1354358186
Sebastien Brisard
Description of upcoming version 3.1 now reports that the accuracy of Beta has
been improved.


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57a21d87c736481f88504e0db8491e7c321666a0
1354357950
Sebastien Brisard
In the users guide, updated the accuracy of logBeta.


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1354313827
Gilles Sadowski
MATH-874
Deprecation.


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2bfd2cc7db199cd6c5e8958e1712a45171eb09ff
1354309343
Sebastien Brisard
MATH-738: New implementation of Beta.logBeta(double, double), based on the NSWC
library of mathematical functions.
  - increased accuracy
  - deprecation of Beta.logBeta(double, double, double, int) as the new
    implementation is no longer iterative.
  - some private methods are tested through reflection.


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144a521db90614386a19e330dbe0a0e684f4152a
1354231560
Gilles Sadowski
MATH-874
Deprecation.


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3a34a005dc72d352011d44624e83edf85b114572
1354195630
Gilles Sadowski
Javadoc.


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3a34a005dc72d352011d44624e83edf85b114572
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638563a10ab495b11991708fda791e63c6a10625
1354194775
Gilles Sadowski
Annotation.


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bebe022d4c54698f80f9d5bd3a6f431a818e9486
1354147251
Gilles Sadowski
Javadoc.


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bebe022d4c54698f80f9d5bd3a6f431a818e9486
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c9aa53939019c9ed2c39bb62229d7fc93d3b6768
1354126412
Gilles Sadowski
MATH-897
Updated "changes.xml".


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d501e58f21bdda31955ffba6ac33c0484e623c2f
1354081887
Sebastien Brisard
Checkstyle: removed exception from signature, as this exception will never be raised.

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1354081730
Sebastien Brisard
Checkstyle.

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ecb2a66bee8b0e97338d5825664bb164572417c4
1354081179
Sebastien Brisard
In GammaTest: restored method checkRelativeError which was inadvertently removed in r1414527.

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5447416f0d20af9bb984c90164d60135b4b88050
1354080816
Sebastien Brisard
In changes.xml: Beta has not been changed yet.


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71d1c3aff101dc9197afa5f4808bf84d2c14a891
1354080638
Sebastien Brisard
Javadoc.


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71d1c3aff101dc9197afa5f4808bf84d2c14a891
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5e60c4b2177847d58d7796062e1809e051218029
1354080447
Sebastien Brisard
In class Gamma, removed auxiliary functions logGammaSum and
logGammaMinusLogGammaSum, as they are not ready to be included in version 3.1
of Commons-Math.


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386325d919b8e8d4f83e85f1d4838b1594ba1989
1354080252
Sebastien Brisard
In class Beta, removed auxiliary function bcorr, as it is not ready to be
included in version 3.1 of Commons-Math.


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854a7a1c8c91d9d5f0344e97a2cb67a70c7e468b
1354059786
Gilles Sadowski
Contents for the release notes.


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fb1517672dafee6d80b1ade6b39d75e06df399e5
1354055237
Gilles Sadowski
MATH-895
Replaced deprecated method with alternative from "MathArrays".


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5f7a481cd95aac0080e937913df4e79bef582baa
1354054776
Gilles Sadowski
MATH-910
Element-by-element basic operations on arrays.


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b221a7342856a2a548f5d9817055defc0ec4dea6
1353970949
Gilles Sadowski
MATH-904.
Fixed wrong assumption in "pow" method.


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b221a7342856a2a548f5d9817055defc0ec4dea6
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efcf91bce70116ab1f628dee5c9ed1c2f18d2db9
1353959707
Sebastien Brisard
In classes o.a.c.m3.special.Gamma and o.a.c.m3.special.Beta, made some
auxiliary functions package private. It is very unlikely that these functions
should be used outside this package, and if necessary, it will always be
possible to increase their visibility (while the reverse would break
compatibility).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1413807 13f79535-47bb-0310-9956-ffa450edef68

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6691271e9f5ce4f754c5d915653e740017d8288d
1353959152
Sebastien Brisard
MATH-849: Gamma.gamma(double) returns NaN if called on negative integer.


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a68723d7dfa69b01676636b1859fcd9e013d6358
1353945715
Gilles Sadowski
MATH-902
Update "changes.xml".


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46d4d64f679af3cfb544bb97464914b5f409d44c
1353936558
Gilles Sadowski
MATH-905
Update "changes.xml".


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46d4d64f679af3cfb544bb97464914b5f409d44c
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875ed1f4d90d1457c0ab40dafc79be5a0c6f9bf6
1353936327
Gilles Sadowski
MATH-905
Avoid overflow on the whole range covered by the equivalent functions in
the standard "Math" class.


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1353935799
Gilles Sadowski
MATH-908
Added constructor.
Javadoc.


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1353928922
Sebastien Brisard
In class Beta, wrote DEFAULT_EPSILON in a less error-prone way (1E-14 instead
of 10e-15).


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b57377e8597f0c2d0888e103b50506c3f519243b
1353878611
Thomas Neidhart
Simplify hashCode/equals/toString methods by using appropriate methods from java.util.Arrays, similar to EuclideanDoublePoint.

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44e0590e2dcfa2cba064866c502c06bc0aa32993
1353861879
Sebastien Brisard
MATH-738: implementation of Beta.bcorr(double, double), an auxiliary function
for the computation of Beta.beta(double, double).


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1353860729
Sebastien Brisard
Javadoc typo.


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1353859557
Sebastien Brisard
Further unit tests of Gamma.logGammaSum(double, double): preconditions.


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c7b14e50703bb6d5aa215a02ec72d791342fb9b4
1353859243
Sebastien Brisard
MATH-738: in class o.a.c.m3.special.Gamma, implemented function
logGammaMinusLogGammaSum(double, double),
which computes accurately log(Gamma(b)) - log(Gamma(a + b))
for a >= 0 and b >= 8. Based on the NSWC library.


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3330dd2dfe3805faa6140fad0c0c0ef3a7ab78a1
1353856822
Sebastien Brisard
Javadoc.


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3330dd2dfe3805faa6140fad0c0c0ef3a7ab78a1
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1353784334
Sebastien Brisard
MATH-849: updated changes.xml


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1353764879
Gilles Sadowski
Formatting.


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1353755712
Gilles Sadowski
Formatting.


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1e33436524b3d617f36ae6bb37e5768ae5cff1a8
1353755470
Gilles Sadowski
MATH-902
Allow stopping condition based on the number of iterations (for "univariate"
optimizers).


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9b86e6334006ecfa89337eb36b31700359c7cd90
1353732242
Phil Steitz
Javadoc.

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1353731850
Phil Steitz
Javadoc.

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4ceada11d2e911f323b852f1f25ccde7b843b223
1353731066
Phil Steitz
Fixed javadoc link.

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1353730680
Phil Steitz
Fixed javadoc tag.

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1353729710
Phil Steitz
Formatting; drop superfluous javadoc link.

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1353729100
Phil Steitz
Javadoc.

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1353710045
Gilles Sadowski
Using methods from JDK.


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f53649744ccade10e90d359610c25723b51b9e89
1353708655
Gilles Sadowski
MATH-908
Added constructor to enable independent settings of the line search
tolerances. Updated unit tests.


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1353704643
Phil Steitz
Updated version.

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1353704308
Phil Steitz
Made source file encoding explicit.

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1353626269
Gilles Sadowski
MATH-902
Fixed Javadoc. Added unit tests.


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1353597956
Gilles Sadowski
MATH-902
"changes.xml" updated.


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1353526682
Thomas Neidhart
Remove unused import.

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1353498540
Gilles Sadowski
Javadoc.


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1353446624
Thomas Neidhart
Added missing keywords.

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1353446034
Thomas Neidhart
[MATH-906] Use NaNStrategy.FAILED as default in NaturalRanking.

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e0552eab0dc7cf651c863ae9fee3fb9e1c1be4a2
1353439997
Gilles Sadowski
Unnecessary code removed.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1411809 13f79535-47bb-0310-9956-ffa450edef68

e0552eab0dc7cf651c863ae9fee3fb9e1c1be4a2
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4a91d0338ff80489a1a105633607857435eecd90
1353439756
Gilles Sadowski
MATH-902
Added a constructor in the custom checkers that enables normal termination
of an optimization algorithm (i.e. returning the curent best point after a
selected number of iterations have been performed).


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a9a26ba8375015d9364868027e10732d8256adea
1353439382
Gilles Sadowski
License text.


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a9a26ba8375015d9364868027e10732d8256adea
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2abb7609c9074b01f62e0bd2a6f80b94becabb88
1353355977
Sebastien Brisard
Javadoc.


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2abb7609c9074b01f62e0bd2a6f80b94becabb88
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be48cdb1e44684934167770bafacd7e1ea0569d0
1353355645
Sebastien Brisard
In class Gamma, implementation of (a, b) -> log(Gamma(a + b)). See MATH-738.


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be48cdb1e44684934167770bafacd7e1ea0569d0
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1a8c5fdf4adc279c16ebe228321eb6946fa2a23f
1353308375
Sebastien Brisard
MATH-903: allow the use of UTF-8 characters in Javadoc comments.


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1a8c5fdf4adc279c16ebe228321eb6946fa2a23f
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2f90cfdde4bbed36a9d6acdba15bd7b88d058050
1353278885
Gilles Sadowski
MATH-899
Fixed copy/paste bug.


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2f90cfdde4bbed36a9d6acdba15bd7b88d058050
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c78f0c013df6029b9f96c5d652f4564926b21a9d
1353276294
Gilles Sadowski
MATH-894
Deprecation.


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c78f0c013df6029b9f96c5d652f4564926b21a9d
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e9c43d6b521223d3702436f355de4a12a9f3f5c9
1353272434
Gilles Sadowski
MATH-899
Added wrapper class that allows thread-safe usage of any "RandomGenerator".


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2981b3509c97809867e2a8b9835378b703ab4746
1353242989
Thomas Neidhart
[MATH-897] Add DBSCAN clustering algorithm, thanks to Reid Hochstedler.

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8c773e39bfebc802d9ebb915dc9ca297b8f7fc71
1353115208
Gilles Sadowski
MATH-894
Reflect type change in "hashCode".


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4969e3917b74face17dbe7375b602bdacecf5b61
1353114817
Gilles Sadowski
MATH-894
Deprecated setter for fields that should be declared as "final".


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4969e3917b74face17dbe7375b602bdacecf5b61
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7852db46e2cb95024165314c452a6813809eddb2
1353114529
Gilles Sadowski
MATH-894
Name change ("contractionCriteria" -> "contractionCriterion").


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1410657 13f79535-47bb-0310-9956-ffa450edef68

7852db46e2cb95024165314c452a6813809eddb2
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c1b0503c856f7d05cf4f7522b20bfb521dfb3c33
1353085156
Gilles Sadowski
MATH-894
Changed type of "expansionFactor" and "contractionCriteria" from
"float" to "double" and deprecated methods and constructors that
use "float".


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c1b0503c856f7d05cf4f7522b20bfb521dfb3c33
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2e0e68cf7e2c1c0c11e8edb74160c68dfeec3e8a
1353084578
Gilles Sadowski
MATH-900
License text moved to "LICENSE.txt".


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2e0e68cf7e2c1c0c11e8edb74160c68dfeec3e8a
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f9a3b1be9e5750399dae4dfc5f8479454fd85ad9
1353083019
Gilles Sadowski
MATH-900
License information moved to "LICENSE.txt".


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f9a3b1be9e5750399dae4dfc5f8479454fd85ad9
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dc2e4861996516cd25c87f19636c545a5751a6e6
1353052729
Luc Maisonobe
Replaced a character encoded in isolatin-1 in Javadoc.

As per current discussions on the dev list, we should go to UTF-8
entirely. For now, I have just used plain old html entities until we
make sure everything can be generated properly from UTF-8.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1410238 13f79535-47bb-0310-9956-ffa450edef68

dc2e4861996516cd25c87f19636c545a5751a6e6
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fe2843d4a0b6b909ba8c897b9e4ddcfd1a9bfe56
1353025938
Gilles Sadowski
By having "UnivariateStatistic" extend the new "MathArrays.Function"
interface, subclassing "ResizableDoubleArray" is not necessary to achieve
the required functionality (see MATH-894).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1410126 13f79535-47bb-0310-9956-ffa450edef68

fe2843d4a0b6b909ba8c897b9e4ddcfd1a9bfe56
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136233e94f30be2981ad90cc36dc6f5a4606d269
1353025110
Gilles Sadowski
MATH-894
Introducing new interface for operating on a "double[]" (added in
the "MathArrays" class). Using this interface, operations can be
performed on the internal array of a "ResizeableDoubleArray" through
a new "compute" method. Thanks to Phil Steitz.



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136233e94f30be2981ad90cc36dc6f5a4606d269
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a752a37be5ee9c24b46bbaad3d4d7cc7f9ef28e3
1353022556
Gilles Sadowski
MATH-894
Removed "initialCapacity" field.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1410109 13f79535-47bb-0310-9956-ffa450edef68

a752a37be5ee9c24b46bbaad3d4d7cc7f9ef28e3
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2778d8fc7aa5c3d90e655fa043c542bd8bbc7c01
1352935505
Gilles Sadowski
Javadoc typo.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1409545 13f79535-47bb-0310-9956-ffa450edef68

2778d8fc7aa5c3d90e655fa043c542bd8bbc7c01
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e61c8c5bc9b901ca0be0c16259dc5f65a8484b65
1352933707
Gilles Sadowski
Replaced calls to deprecated methods in "ResizeableDoubleArray" (see
MATH-894). Created subclass of "ResizeableDoubleArray" in order to
access to the object's internal array.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1409509 13f79535-47bb-0310-9956-ffa450edef68

e61c8c5bc9b901ca0be0c16259dc5f65a8484b65
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72f87092f3cb83c2d09df96a6b4a45b0b0305f0f
1352931234
Gilles Sadowski
MATH-894
Added new "protected" (and not "synchronized") methods to allow access to
the internal array for subclasses only.
Javadoc formatting.


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72f87092f3cb83c2d09df96a6b4a45b0b0305f0f
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16117a42b74b3fd31b601446a52319c7e3b0031b
1352923791
Thomas Neidhart
Reduce sleep time in unit test to prevent possible race condition.

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16117a42b74b3fd31b601446a52319c7e3b0031b
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11aca637d2f60ac75a9c433b9566ad47b43a40af
1352878959
Sebastien Brisard
New values of the accuracy of Beta.logBeta(double, double).


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12dd10fcda32c79dffa3ea4849ef1a96433c81f8
1352878889
Sebastien Brisard
Further accuracy assessments of Beta.logBeta(double, double)


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12dd10fcda32c79dffa3ea4849ef1a96433c81f8
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ab02fd9020832e4eb18dc12cb27c6f9f888e0ea8
1352873920
Sebastien Brisard
Typo.


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ab02fd9020832e4eb18dc12cb27c6f9f888e0ea8
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af2a85be178f6577ea8043dedc13661c6ed787ba
1352826227
Gilles Sadowski
MATH-894
Made the doc reflect the new behaviour of "clear()".


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af2a85be178f6577ea8043dedc13661c6ed787ba
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0dd3e5e819d4ac3165755a7ccff035536498929b
1352825593
Gilles Sadowski
Use constructor chaining (in place of duplicate code).
Fixed Javadoc typos (expansion factor and contraction criterion default
values).
Javadoc formatting.


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0dd3e5e819d4ac3165755a7ccff035536498929b
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5500bb8c4f53a56d5098e7e76c5a1b5fc6686574
1352822126
Gilles Sadowski
Avoid duplicate computation.


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5500bb8c4f53a56d5098e7e76c5a1b5fc6686574
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6c8a9022324e95a95730d2be019549123cdf9a09
1352821824
Gilles Sadowski
MATH-894
Added new enum type to replace the integers used to represent the
expansion mode. Deprecated methods and contructor that use the old
representation.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1408797 13f79535-47bb-0310-9956-ffa450edef68

6c8a9022324e95a95730d2be019549123cdf9a09
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148ec7b1db63db30d42a04f3f4be8885d161dbd9
1352816026
Gilles Sadowski
MATH-894
Removed the reallocation in method "clear()".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1408735 13f79535-47bb-0310-9956-ffa450edef68

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3f694050709d785f4d7a7394588dea9cfea0d1e6
1352814945
Gilles Sadowski
MATH-894
Deprecated methods that exposed internal state.


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314a973bf67f01b650d8d4063d36165eb3214720
1352736216
Gilles Sadowski
Formatting, Javadoc, "final" keyword.


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314a973bf67f01b650d8d4063d36165eb3214720
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eb9cdbe613895605e5ce7ac3e448e4d27ddd834b
1352727440
Phil Steitz
Consistently use G for G Test.

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ca6d8b8144edb3783449d47dd6523213fbaa101b
1352727206
Gilles Sadowski
MATH-894
New method "getCapacity". Deprecated "getInternalLength".


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ca6d8b8144edb3783449d47dd6523213fbaa101b
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527922a3865e9f07cbf3f102b9201987f505c554
1352720200
Gilles Sadowski
MATH-887
Changed "computeWeightedJacobian" to return exactly that, instead of the
weighted Jacobian matrix multiplied by -1. Changed subclasses accordingly.


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f5af07f8282efc63b4a47e9e04b34e4f511b2925
1352719651
Gilles Sadowski
Javadoc.


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f5af07f8282efc63b4a47e9e04b34e4f511b2925
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f3a4e0bfdf58b03f03d7db4d5efd76683e8053c8
1352694791
Phil Steitz
Added G-test. JIRA: MATH-878.

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639fd3d8097111a4b3a6ee2202d48b0222a25ee4
1352694722
Phil Steitz
Added G-test to TestUtils. JIRA: MATH-878

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639fd3d8097111a4b3a6ee2202d48b0222a25ee4
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cd7b7ace9552b2119e6f3cb1cecbf3a16fc24532
1352694586
Phil Steitz
Changed G-test method names to follow conventions in the inference package.  JIRA: MATH-878.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1408172 13f79535-47bb-0310-9956-ffa450edef68

cd7b7ace9552b2119e6f3cb1cecbf3a16fc24532
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947dbf7122ee3d63278a9d63ec071c6b3cfba3be
1352567691
Thomas Neidhart
[MATH-893] Add new NaNStrategy FAILED, thanks to Patrick Meyer.

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947dbf7122ee3d63278a9d63ec071c6b3cfba3be
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4d738898193760160fbef6bcd010a42f978fb912
1352566739
Thomas Neidhart
Fix typo.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1407848 13f79535-47bb-0310-9956-ffa450edef68

4d738898193760160fbef6bcd010a42f978fb912
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a0de116a2e8b5683fc55baa6e68adf8fc985c8d0
1352566309
Thomas Neidhart
[MATH-892] Add new ctor to SpearmansCorrelation, reordering of ctors.

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a0de116a2e8b5683fc55baa6e68adf8fc985c8d0
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25894451cad65f0a63cbc2ea6bcb372f639455b2
1352487808
Sebastien Brisard
In the users guide for special functions
  - accuracy of current implementation of Beta.logBeta
  - standard deviation of error (in ulps) is now provided for all special
    functions that have already been evaluated.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1407594 13f79535-47bb-0310-9956-ffa450edef68

25894451cad65f0a63cbc2ea6bcb372f639455b2
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0d0f90a4ede176ff419e02dbb5fc42d06dd63e1f
1352487561
Sebastien Brisard
Script files for the validation of beta.logBeta(double, double)


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1407592 13f79535-47bb-0310-9956-ffa450edef68

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44f670df6d0da3db3d39ef5c8c0f5b551768de49
1352476136
Gilles Sadowski
MATH-887
Removed usage of "protected" fields "cols" and "rows".


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61b6d878dd6591103e7f67957d5bc3ff437d8bf6
1352474111
Gilles Sadowski
MATH-894
Removed call to "contract" in "addElement".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1407485 13f79535-47bb-0310-9956-ffa450edef68

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7ac9b6556ac3e1cc64b99a20b4139214746dfc58
1352473030
Gilles Sadowski
MATH-887
Renamed "computeJacobian" to "computeWeightedJacobian" to relect what is
actually done.
Made "setCost" a "protected" method (as it should only be modified according
to the optimum found by the subclass's algorithm (defined in "doOptimize()").


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8130aab6262be1ca199a204ab5bc9b2690411f07
1352471449
Gilles Sadowski
MATH-887 
In "LevenbergMarquardtOptimizer", removed usage of deprecated fields and
methods from its base class.


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4e0f9b7ea5fce1951cf9d8037cebf22360618b4f
1352451004
Sebastien Brisard
In shell script RealFunctionValidation.sh, pass command line argument to java
app.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1407384 13f79535-47bb-0310-9956-ffa450edef68

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d141e8ca810b019f7f4d2ee6280712a7635b999a
1352450858
Sebastien Brisard
Typo.


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d141e8ca810b019f7f4d2ee6280712a7635b999a
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4a2c4c66ad3e03167f392661f570465fd1718349
1352449740
Sebastien Brisard
Ignore *.dat files, which might be generated by the *.mac Maxima scripts.


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4fb8cf9b0dcb07bc941f50d1726633f0a283e678
1352449456
Sebastien Brisard
Properties files to be used with RealFunctionValidation, for functions
Gamma.logGamma and Gamma.gamma.


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49bfc6626f528c8be65aa19357b7c57fef30b6d5
1352448798
Sebastien Brisard
Small java application for the accuracy assessment of implementations of real
functions in Commons Math. The accuracy is assessed through comparison with
reference values computed with multi-precision softwares.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1407376 13f79535-47bb-0310-9956-ffa450edef68

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b804542d53c3411a815e5c975a13c7878b5f882a
1352379547
Gilles Sadowski
"final" keyword.


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b804542d53c3411a815e5c975a13c7878b5f882a
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d370aea4cafe989b86ba397e7cf4fc203545194f
1352378934
Gilles Sadowski
MATH-887
Made "GaussNewtonOptimizer" use the new methods in base class
"AbstractLeastSquaresOptimizer" instead of modifying the (now
deprecated) protected fields.


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d370aea4cafe989b86ba397e7cf4fc203545194f
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f377db35695def4a1dca81e9db863da995e0f5a9
1352371834
Gilles Sadowski
MATH-887
Deprecated "protected" fields.
Created new methods (that take arguments and return a value) to
replace those that operate on protected fields.
Removed call to deprecated methods in unit tests.
Added public method "setCost" to replace the direct assignment to
a protected field.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1407010 13f79535-47bb-0310-9956-ffa450edef68

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2885ba16a28d13ebff189cf9885ca407dad2d69c
1352158865
Gilles Sadowski
MATH-887
First steps to enhance encapsulation (goal is to remove the "protected"
fields): used new API (MATH-874).
Replaced explicit loops with matrix operations.
Disabled a unit test that does not pass anymore.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1406010 13f79535-47bb-0310-9956-ffa450edef68

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1352158335
Gilles Sadowski
Typos.


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a00f2246ef77015e554cf6c5e29824e37aa41466
1352105018
Luc Maisonobe
Fixed naming inconsistencies between Interval and IntervalsSet classes.

JIRA: MATH-890

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0d9020c59acab76278d046574679030e8c96bc9d
1352102419
Luc Maisonobe
Added a method to check points in the Interval class.

JIRA: MATH-889

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1405706 13f79535-47bb-0310-9956-ffa450edef68

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52d616f62a283c5505281b29c60c4f69cf6d2d21
1352062597
Phil Steitz
Reverting changes inadvertently committed in r1405634.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1405635 13f79535-47bb-0310-9956-ffa450edef68

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cdd8d43765055fbb3f0010a81fc9f3d4e5d137cb
1352062281
Phil Steitz
Javadoc fix.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1405634 13f79535-47bb-0310-9956-ffa450edef68

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29adbd00da865d076201875941d8d93b14629123
1352057555
Phil Steitz
Added G-test statistics. JIRA: MATH-878.  Thanks to Radoslav Tsvetkov and Ted Dunning.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1405620 13f79535-47bb-0310-9956-ffa450edef68

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fd1ccacd097b6818fdf37dfec5ab1727ec0662fe
1351972001
Phil Steitz
Javadoc fixes.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1405409 13f79535-47bb-0310-9956-ffa450edef68

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1351680309
Gilles Sadowski
Javadoc.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1404085 13f79535-47bb-0310-9956-ffa450edef68

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2a7be0b493fed75487796db3f592fff109ab6773
1351590729
Luc Maisonobe
streamlined deserialization of DerivativeStructure

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1403648 13f79535-47bb-0310-9956-ffa450edef68

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1e40649f64bde553a731d54b0f39a42a7a4ab8f9
1351557524
Gilles Sadowski
Use the "isSymmetric" utility method from "MatrixUtils" (copied from
"EigenDecomposition" in MATH-884).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1403591 13f79535-47bb-0310-9956-ffa450edef68

1e40649f64bde553a731d54b0f39a42a7a4ab8f9
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734ffc68458942000e984c368bee743f59bace9d
1351556946
Gilles Sadowski
MATH-883
Added "getSquareRoot()" method. Implementation only supports symmetric,
diagonalizable matrices.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1403590 13f79535-47bb-0310-9956-ffa450edef68

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1d0f8c0e3e16a2159b52c16f36a50559d3550bfa
1351556480
Gilles Sadowski
MATH-884
Added methods "isSymmetric" and "checkSymmetric".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1403587 13f79535-47bb-0310-9956-ffa450edef68

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ece8fb2929e1e5ea58e05b2a74050db571d990bd
1351483574
Phil Steitz
Moved array argument validation methods from ChiSquareTest to MathArrays. JIRA: MATH-885.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1403169 13f79535-47bb-0310-9956-ffa450edef68

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7364e7ae70441ec0a1447435d2cbe2754d187836
1351348286
Thomas Neidhart
Completed javadoc.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1402800 13f79535-47bb-0310-9956-ffa450edef68

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d4c5054c6b4d667c7273e642e4a7f21f95c06d76
1351294652
Gilles Sadowski
Removed quasi-duplicate code.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1402716 13f79535-47bb-0310-9956-ffa450edef68

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717e750a6615540b6766ed0c608c63bb66d0311b
1351276054
Gilles Sadowski
MATH-874
I forgot to "svn add" classes (in revision 1402607).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1402611 13f79535-47bb-0310-9956-ffa450edef68

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320475b3cdc3ea06af3b46b6c0dca20a8c2e6e53
1351275580
Gilles Sadowski
MATH-874
First steps to upgrade the API of the classes in "o.a.c.m.optimization.general".
Please note the introduction of a "Weight" matrix (whereas the current code
assumes that the weights are given as an array).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1402607 13f79535-47bb-0310-9956-ffa450edef68

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1f0d62cf20ad17542d1766ee2b0202b0333060c6
1351124424
Gilles Sadowski
MATH-874
Reduced number of overridden public "optimize" methods (replaced by protected
"optimizeInternal"): whenever the code is ready for 4.0, only the base class's
"optimize" method should define the public API (subclass specifics are handled
in overridden "optimizeInternal" which must call the base class's version to
handle the common setup).


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0a4491eb2bf9fd55432dfc0eca28bb6e551207ba
1351118305
Gilles Sadowski
Updated "changes" file.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1401906 13f79535-47bb-0310-9956-ffa450edef68

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988334fa99a362c87de553a9e4b1fbf8940bcd68
1351114064
Gilles Sadowski
MATH-816
Using different seeds for the component distributions to avoid getting
the same sequence of random numbers for all of them. Update to the
"testSampling" unit test contributed by Jared Becksfort.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1401894 13f79535-47bb-0310-9956-ffa450edef68

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d377887e375426dd3fc73bfbb85f23a91f845919
1351107608
Luc Maisonobe
Use the new differentation API for all optimizers.

The older API is still supported as of version 3.1, but is implemented
by wrapping the user function into the new API and then calling the new
code.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1401838 13f79535-47bb-0310-9956-ffa450edef68

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7a5b74b29aab5ef251aefd3aba1333b4ab496e47
1351107585
Luc Maisonobe
Added converters for multivariate functions.

The converters allow to convert back and forth between the older
and the newer differentiation API. They are considered temporary methods
for version 3.1 and will be removed in 4.0 as only the new API will
remain.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1401837 13f79535-47bb-0310-9956-ffa450edef68

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Thomas Neidhart
Added missing closing action tag.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1401451 13f79535-47bb-0310-9956-ffa450edef68

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Thomas Neidhart
Fix spelling.

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Sebastien Brisard
Reverted changes inadvertently commited in r1401171.


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3771d22a1dfd6da401dc04612511faa426974595
1350972249
Sebastien Brisard
Maxima scripts to generate reference values for the gamma and logGamma
functions.


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e599e926c66a13f1693f0fb8999775ab6012bdea
1350934323
Luc Maisonobe
Removed unused exception.

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893f858e5c48d471b145439e719496596650473f
1350933696
Luc Maisonobe
Finalized fix for MATH-880.

This version should be much more robust on polygons computation than the
earlier ones. Note that the hyperplaneThickness parameter is a key
tuning parameter in difficult cases like the one involved in the issue.
As shown in the corresponding unit test, the value had to be raised to
1.0e-8 in order for the test to pass correctly.

JIRA: MATH-880

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4bf4af876ed28972a5066fa0a7f987114e415b63
1350931653
Thomas Neidhart
[MATH-759] add resolution to changes.xml.

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1350914246
Gilles Sadowski
Javadoc.


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ec145be03350c6b29b2f59078f374dbdb28ffb66
1350907037
Gilles Sadowski
MATH-854
Fill "throw" clauses.


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ce6d20cc61b1a562c120d65a320ce6ed52e13188
1350850112
Luc Maisonobe
Improved polygons creation with a numerically more robust constructor.

This is only a partial fix for issue 880 because there are still some
glitches in the first polygon involved in the issue.

JIRA: MATH-880

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1400717 13f79535-47bb-0310-9956-ffa450edef68

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ba204bf3ae1d66e5b74bf8e6f43af138615e5eb5
1350841493
Thomas Neidhart
Added Dan Checkoway as contributor due to his patch for MATH-474.

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1350841388
Thomas Neidhart
Fix special characters in changes.xml.

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289e7fad0b3e362e4b38fc400166395d2baf5331
1350840817
Thomas Neidhart
[MATH-474] Added Frequency#merge method, thanks to patch from Dan Checkoway.

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1350837698
Thomas Neidhart
Small fixes of javadoc @throws tags.

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1350837280
Thomas Neidhart
Removed unneeded import in package-info.

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1350837150
Thomas Neidhart
Fix checkstyle warnings, added missing javadoc.

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c657a840cc1ce8f80ecbdb761851c356a82cf41b
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621806b796bc416f00341feca894ebae07be5ed0
1350836570
Thomas Neidhart
[MATH-778] Allow unlimited input values for Dfp#multiply.

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621806b796bc416f00341feca894ebae07be5ed0
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07611165b6176b6e3e6d5ac6ca052a102f10e3c4
1350656416
Gilles Sadowski
MATH-868
MATH-879
"lambda" and "inputSigma" should be passed to "optimize" as arguments of
type "OptimizationData". Deprecated constructors. Updated unit tests.


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3a610d3651fd86fca04ffb426da0984cb4ec6ab1
1350644453
Gilles Sadowski
MATH-816
Mixture model distribution.  Original code contributed by Jared Becksfort,
committed with changes as discussed on the JIRA page.


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05366a5efbe8713df2b887d3c6918c45c07c71b5
1350640501
Gilles Sadowski
MATH-815
Added method that was missing in the original commit: "getDimensions()",
renamed to "getDimension()".


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146638add36b741ecd1def8358b0ed5f916a6dca
1350639044
Gilles Sadowski
MATH-881
Removed useless method.


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1350595573
Gilles Sadowski
MATH-881
Removed meaningless properties for multivariate distributions.


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c88186eb8dec1ed3f0234ddcc0f1a0ad75b3ca1b
1350508167
Gilles Sadowski
Inner class should have been "static".


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0320f5e668e2784bd6f6bce077bfff9bc9683370
1350340230
Gilles Sadowski
Formatting.
"final" keyword.


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1e4d8a5dcd6fe5563adc5e986fed327e4db37f7d
1350310172
Gilles Sadowski
Formatting.
Removed unnecessary decimal point on constants, and added explicit cast where
necessary.


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1e4d8a5dcd6fe5563adc5e986fed327e4db37f7d
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9893a19af5809f9f40c1b51ec283885a3d910d2a
1350308023
Gilles Sadowski
MATH-873
Removed usage of "maximum number of evaluations" in a place where it altered
the algorithm's core behaviour (whereas it should only serve as a processing
time limit).


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b4d3b7129bafdb5d3f9b81e001b314129d7177c2
1350306735
Gilles Sadowski
MATH-872
Sigma values expressed as a kind of "OptimizationData". Deprecated
constructors that were passed an "inputSigma" argument.


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d0d685f3f3c180d1e1fd75f5bd8071806d1c3005
1350303413
Gilles Sadowski
MATH-874
Simple bounds expressed as a kind of "0ptimizationData".
The specification of simple bounds is handled in "BaseAbstractMultivariateOptimizer";
hence "BaseAbstractMultivariateSimpleBoundsOptimizer" is deprecated.


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1350090778
Gilles Sadowski
MATH-874
New API allows to pass the simplex as an argument to "optimize".


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b2f7873c8e1fe411a03b75c1c1176f75d17dca71
1350090542
Gilles Sadowski
MATH-874
New "optimize" method.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1397758 13f79535-47bb-0310-9956-ffa450edef68

b2f7873c8e1fe411a03b75c1c1176f75d17dca71
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952caeca19963edf528bc9b023f608c2198ebcef
1349968687
Gilles Sadowski
Replaced bit operator with logical operator.


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Gilles Sadowski
Javadoc. [After the MATH-867 fix, this warning is obsolete.]


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Luc Maisonobe
Fixed javadoc warnings.

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Gilles Sadowski
MATH-876
Changed "<commons.componentid>" property (used in "commons-parent" to create
the "Bundle-SymbolicName" entry in "MANIFEST.MF").


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Sebastien Brisard
MATH-875: deprecated sparseIterator() in the RealVector hierarchy, and replaced its use with iterator().

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Sebastien Brisard
MATH-854: FieldMatrix.setSubMatrix does *not* throw NumberIsTooSmallException.

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Sebastien Brisard
MATH-854: populated throws clause of BlockFieldMatrix.

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Gilles Sadowski
Javadoc.


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Phil Steitz
Made file character set explicit and added file loading tests.

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Phil Steitz
Removed trailing spaces.

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Phil Steitz
Javadoc.

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Gilles Sadowski
Read bound values from base class instead of duplicating the data.


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Gilles Sadowski
Improved Javadoc.


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Thomas Neidhart
Remove trailing spaces, added missing javadoc tags.

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Sebastien Brisard
User's guide for special functions now reports accuracy of
Gamma.gamma(double).


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Sebastien Brisard
MATH-854: populated throws clause of Array2DRowFieldMatrix.

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Sebastien Brisard
MATH-854: populated throws clause of AbstractFieldMatrix.

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Sebastien Brisard
MATH-854: populated throws clause of FieldMatrix.

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Sebastien Brisard
User's guide for special functions now reports accuracy of
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Phil Steitz
Final keyword.

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Phil Steitz
Added missing throws declarations. JIRA: MATH-854.

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Gilles Sadowski
Indentation.


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Luc Maisonobe
Added distance to point to 2D Line and Segment.

Patch provided by Curtis Jensen applied with minor modifications.

JIRA: MATH-641

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Gilles Sadowski
Update "changes.xml".


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Gilles Sadowski
CheckStyle.


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:100644 100644 388d1dfd4fcbda1e9949881440a8ff1561fdc1ea 2fb4fb83aef11dd14c8a5209de65d7bdba491aab M	src/main/java/org/apache/commons/math3/optimization/direct/CMAESOptimizer.java
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5f1b2dfe73a57ebc4e416e7a3fd41bb8bfa8cc98
1348957098
Gilles Sadowski
MATH-867
Previous commit was missing a crucial modification (in the "repair" method),
an inconsistency which entailed the failing of some tests.
With that modification (thanks to Nikolaus Hansen), it was established that
the "encode" and "decode" steps were indeed useless. This commit thus removes
them, and all the code that was necessary only because of those two methods.
Finite and infinite can now be freely mixed.
Unit tests that depended on those limitations were also removed (thus also
the one that was added following MATH-865).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1391908 13f79535-47bb-0310-9956-ffa450edef68

5f1b2dfe73a57ebc4e416e7a3fd41bb8bfa8cc98
:100644 100644 866c8fdf87c850f40dcbd67099b226655773b17d 388d1dfd4fcbda1e9949881440a8ff1561fdc1ea M	src/main/java/org/apache/commons/math3/optimization/direct/CMAESOptimizer.java
:100644 100644 4ebd1b0c36b38551149e0fc10c1cd64297842698 67672067e77aafca9e7a2e98cbd4316d7b1dc2b0 M	src/test/java/org/apache/commons/math3/optimization/direct/CMAESOptimizerTest.java

7c7d7e8f103582e753c39a2baf14a483e991fefb
1348937898
Gilles Sadowski
MATH-867
Modified "encode" and "decode" methods. Unit test "testFitAccuracyDependsOnBoundary"
now passes and is thus enabled. Unit test "testConstrainedRosen" had to be modified
in order to not fail with the new code (starting point is set closer to the solution).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1391840 13f79535-47bb-0310-9956-ffa450edef68

7c7d7e8f103582e753c39a2baf14a483e991fefb
:100644 100644 f6a4f2820ad160925e8ec568861c70965f94a48e 866c8fdf87c850f40dcbd67099b226655773b17d M	src/main/java/org/apache/commons/math3/optimization/direct/CMAESOptimizer.java
:100644 100644 9d43909c2384f3af50e14282465e2b9683c7b25c 4ebd1b0c36b38551149e0fc10c1cd64297842698 M	src/test/java/org/apache/commons/math3/optimization/direct/CMAESOptimizerTest.java

6e62aefca7aefe26a2ebc43fcdcd6cd58953f7de
1348841179
Gilles Sadowski
MATH-867
Unit test showing the problem. It is disabled (with the "@Ignore" annotation)
because it fails with the current code.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1391477 13f79535-47bb-0310-9956-ffa450edef68

6e62aefca7aefe26a2ebc43fcdcd6cd58953f7de
:100644 100644 aec40b053e6635192ad93f1b2a020fd7332bd1e6 9d43909c2384f3af50e14282465e2b9683c7b25c M	src/test/java/org/apache/commons/math3/optimization/direct/CMAESOptimizerTest.java

4c5534fc9c99e4bfd55991c42821bf26fc0eef49
1348838922
Luc Maisonobe
Fixed some issues in nth root derivatives at 0.

The current behavior is correct with respect to infinities and NaN being
appropriately generated, but in some cases counter-intuitive.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1391451 13f79535-47bb-0310-9956-ffa450edef68

4c5534fc9c99e4bfd55991c42821bf26fc0eef49
:100644 100644 46cefb8bc698dfe341ea7e8c16d516681e71c142 82ab8ff637277875a5c7a4ca1c8a00b15b677e7b M	src/changes/changes.xml
:100644 100644 926a94e0b6f2f7dd56d287208f6972e9bb33d47a 11265c9291dfe3171dcf023ee75dbe7d79ea4fa8 M	src/main/java/org/apache/commons/math3/analysis/differentiation/DSCompiler.java
:100644 100644 fcd2905f0229569b9ad8519c932ec4aaf2b159d5 481941ef5c416130fd99a693427f51bbaa134ff7 M	src/test/java/org/apache/commons/math3/analysis/differentiation/DerivativeStructureTest.java
:100644 100644 50f6aac111913d6382bc89fe7f46908cd815ff99 b66b49e0a5a1a42a0da1c4a79f2b3fd953a1a884 M	src/test/java/org/apache/commons/math3/analysis/function/SqrtTest.java

25aad2a405ba849b8a7d8784a522753bcb8382b7
1348809906
Sebastien Brisard
User's Guide, Special Functions: changed the introduction, as special functions
should not be considered as a by-product of Commons-Math.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1391304 13f79535-47bb-0310-9956-ffa450edef68

25aad2a405ba849b8a7d8784a522753bcb8382b7
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9afe132f1e1f40bdda9ea13e16c2517cd7cace34
1348809250
Sebastien Brisard
User's guide for special functions now uses the APT format, instead of the XDOC
format.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1391302 13f79535-47bb-0310-9956-ffa450edef68

9afe132f1e1f40bdda9ea13e16c2517cd7cace34
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7b45e6f6cacb8966debb805b25c410adbe8c0f92
1348771365
Sebastien Brisard
MATH-854: filled the "throws" clause of BlockRealMatrix.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1391160 13f79535-47bb-0310-9956-ffa450edef68

7b45e6f6cacb8966debb805b25c410adbe8c0f92
:100644 100644 04ba0b2e0119d48e79a374a7e57f1b3cea19821b a03c4f45607d0714baa9d98ad81ff0064eed7c91 M	src/main/java/org/apache/commons/math3/linear/BlockRealMatrix.java

f3599aeb2e1794560d66dbe489679618608b7d58
1348722250
Sebastien Brisard
Populated throws clause of OpenMapRealMatrix (MATH-854).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1390842 13f79535-47bb-0310-9956-ffa450edef68

f3599aeb2e1794560d66dbe489679618608b7d58
:100644 100644 881e11833bfb33e44908bda35098eb6f9176ebf5 432d9ede86ec35b458f5ddc370f026a8a368bbb9 M	src/main/java/org/apache/commons/math3/linear/AbstractRealMatrix.java
:100644 100644 d0e42e09dce4cb036382bf33649050b992bc543a 31c586321fa049fbb27c1d05f4dbcd356d5071d2 M	src/main/java/org/apache/commons/math3/linear/OpenMapRealMatrix.java

7c78caeac716ade0a945f684ba933a7737ba8099
1348718044
Sebastien Brisard
MATH-870: deprecated SparseFieldMatrix.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1390832 13f79535-47bb-0310-9956-ffa450edef68

7c78caeac716ade0a945f684ba933a7737ba8099
:100644 100644 73a425906163f52412d92ae36c40c7cf49da2f89 4705d256a968e5ba7ae4acc1d2a6c2a3fd2e154b M	src/main/java/org/apache/commons/math3/linear/SparseFieldMatrix.java

0b5c213023913b5fa46f03296e9f6da76b4bbba3
1348717954
Sebastien Brisard
MATH-870: deprecated SparseRealMatrix and OpenMapRealMatrix.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1390831 13f79535-47bb-0310-9956-ffa450edef68

0b5c213023913b5fa46f03296e9f6da76b4bbba3
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:100644 100644 0f4af780bc8d41b56c62c4aa882da1d1ab8d461b a0156b6756e5debe7514403dc8d50328add6416d M	src/main/java/org/apache/commons/math3/linear/SparseRealMatrix.java

f78bd2b412428a91c32c4735b55ad7e5687af737
1348717794
Sebastien Brisard
MATH-870: deprecated SparseFieldVector.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1390829 13f79535-47bb-0310-9956-ffa450edef68

f78bd2b412428a91c32c4735b55ad7e5687af737
:100644 100644 c323ebc3e259ac854ff0123c36471bcae5292156 ab4489d620c0489bb602ae410f6e34ba6c991770 M	src/main/java/org/apache/commons/math3/linear/SparseFieldVector.java

853a7931b9fe8603b49685379cf52a9e6f8263a2
1348717724
Sebastien Brisard
MATH-870: javadoc.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1390828 13f79535-47bb-0310-9956-ffa450edef68

853a7931b9fe8603b49685379cf52a9e6f8263a2
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:100644 100644 8e76df8b02a625f75ae2149d7088299c31a6b189 c66d4d716a6b0073a44d87aed2adc85c5b111032 M	src/main/java/org/apache/commons/math3/linear/SparseRealVector.java

300d34bb13bcfb127acbe2abb79c19a044df0ac5
1348687049
Sebastien Brisard
MATH-870: deprecated OpenMapRealVector, SparseRealVector.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1390684 13f79535-47bb-0310-9956-ffa450edef68

300d34bb13bcfb127acbe2abb79c19a044df0ac5
:100644 100644 d7aa6f1cb96544b291124f8464c4af95b633c7e6 7279885e09ff3ba6728e1d0a2f71ea47f9e820b9 M	src/main/java/org/apache/commons/math3/linear/OpenMapRealVector.java
:100644 100644 388f527a7462fafd313bb9c9883550a7718995c6 8e76df8b02a625f75ae2149d7088299c31a6b189 M	src/main/java/org/apache/commons/math3/linear/SparseRealVector.java

b4d82b8b78e19c260cf66029e5ab9f21838decda
1348652359
Gilles Sadowski
MATH-853
New exception intended to become, as of release 4.0, the base class for
all CM exceptions (except "NullArgumentException").


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1390354 13f79535-47bb-0310-9956-ffa450edef68

b4d82b8b78e19c260cf66029e5ab9f21838decda
:000000 100644 0000000000000000000000000000000000000000 8b98c2c61edccbd56dcf72a90b26041648b4c45b A	src/main/java/org/apache/commons/math3/exception/MathRuntimeException.java

b66f972b623e8c93184585a7289b617654558f41
1348644275
Sebastien Brisard
In AbstractRealMatrix, provided empty implementations to methods
  - createMatrix(int, int),
  - copy(),
  - getEntry(int, int),
  - setEntry(int, int).
This allows the use of the @Override tag in classes Array2DRowRealMatrix, BlockRealMatrix,
OpenMapRealMatrix with java 5.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1390302 13f79535-47bb-0310-9956-ffa450edef68

b66f972b623e8c93184585a7289b617654558f41
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:100644 100644 4177dca512e1c2fb4efc9d5460a782848d1e4fa8 6c7bf51a468696fb9c1c3e9478112f98c16a29c2 M	src/main/java/org/apache/commons/math3/linear/OpenMapRealMatrix.java

b0d18a4cc0be57b3bf37735848b2742cb2594c22
1348581417
Thomas Neidhart
Javadoc fixes.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1389866 13f79535-47bb-0310-9956-ffa450edef68

b0d18a4cc0be57b3bf37735848b2742cb2594c22
:100644 100644 3e5e0e07730638c6f60530a23886123a59aedd3a 7070060478e81353c72818f82118233ee1742642 M	src/main/java/org/apache/commons/math3/geometry/partitioning/utilities/AVLTree.java
:100644 100644 308798eb3704f6cac481779bbe6665ecdcf01f6f f80294329ade8d2c5d4998f288ef94d8415d85e9 M	src/main/java/org/apache/commons/math3/geometry/partitioning/utilities/OrderedTuple.java

e457a7cf5f62dc9507a93232cf11f54b269e635e
1348579756
Luc Maisonobe
Typo.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1389858 13f79535-47bb-0310-9956-ffa450edef68

e457a7cf5f62dc9507a93232cf11f54b269e635e
:100644 100644 a240605fac5d8def88ad909eb3e380d67e933715 926a94e0b6f2f7dd56d287208f6972e9bb33d47a M	src/main/java/org/apache/commons/math3/analysis/differentiation/DSCompiler.java

138e161685689ee5ca6bd684dbebe210fb9e7e88
1348436571
Phil Steitz
Added tests confirming exception behavior for regress(double[]).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1389150 13f79535-47bb-0310-9956-ffa450edef68

138e161685689ee5ca6bd684dbebe210fb9e7e88
:100644 100644 808643513d780ac5dbfe62f090002cc1f97ddc1b 73870d3cef7bdb756a3d9a011b7646294b9e33e2 M	src/test/java/org/apache/commons/math3/stat/regression/SimpleRegressionTest.java

7f7c4852c00878beb0fe92627700ad52ed51f261
1348428842
Thomas Neidhart
[MATH-848] Fixed Schur transformation for certain input matrices, changed index parameter names to indicate their purpose.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1389129 13f79535-47bb-0310-9956-ffa450edef68

7f7c4852c00878beb0fe92627700ad52ed51f261
:100644 100644 ecafe3806e269a8acfb17a924681a19aa627edfb 46cefb8bc698dfe341ea7e8c16d516681e71c142 M	src/changes/changes.xml
:100644 100644 584505de64c22449bd4d54fb5a19e450854a10c2 a2ea88ee41457e4d8395400ddff64d323e045f2c M	src/main/java/org/apache/commons/math3/linear/SchurTransformer.java
:100644 100644 3613c13c08f5204bd6e2513e797bf39a194f5391 2cf223ecc10add4b023f70199e3c393380873a5e M	src/test/java/org/apache/commons/math3/linear/EigenDecompositionTest.java
:100644 100644 8a6e4112e5180b61c3520a400536c76a5fffc246 d40a1ba085f807586850b6d00dc7ac21e5416b23 M	src/test/java/org/apache/commons/math3/linear/SchurTransformerTest.java

0dd459826d7f17c9382004ef7707d9af2ab87f58
1348308173
Gilles Sadowski
Typo.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1388766 13f79535-47bb-0310-9956-ffa450edef68

0dd459826d7f17c9382004ef7707d9af2ab87f58
:100644 100644 c17f72d16ec4ed586b064b9863f31f758ad5ffcd aec40b053e6635192ad93f1b2a020fd7332bd1e6 M	src/test/java/org/apache/commons/math3/optimization/direct/CMAESOptimizerTest.java

abb204e12a15d6d4ee1302611169da1f91364003
1348242066
Gilles Sadowski
MATH-860
Matrix "block inversion".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1388555 13f79535-47bb-0310-9956-ffa450edef68

abb204e12a15d6d4ee1302611169da1f91364003
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:100644 100644 ed8b80b29bb551d966976212cca7c848a9229681 f2414cacc726de51b800d1f67151ab1b79ac7e05 M	src/main/java/org/apache/commons/math3/linear/MatrixUtils.java
:100644 100644 a2afdc593131801a20dc13b839c65fde8d18fbf5 6f9959a788fb7ced549031d67dac16dd9bcf181e M	src/test/java/org/apache/commons/math3/linear/MatrixUtilsTest.java

4e38287447d77ad441aa176820f2279ac5b0a105
1348241643
Gilles Sadowski
MATH-865
Update "changes" file.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1388554 13f79535-47bb-0310-9956-ffa450edef68

4e38287447d77ad441aa176820f2279ac5b0a105
:100644 100644 7bf77019ee6be85b516f9b9423c270d8a37ce8c9 b3b8a2e5e857422348293f9b1ac1ed7455d993e7 M	src/changes/changes.xml

c73fad0a0d42103b5e13a68317ea95b1090263ba
1348241538
Gilles Sadowski
MATH-865
Early detection that overflow will occur in the variables normalization
procedure ("encode" method). Warning mentioned in the documentation.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1388552 13f79535-47bb-0310-9956-ffa450edef68

c73fad0a0d42103b5e13a68317ea95b1090263ba
:100644 100644 b54cb374455bc5169e5461e70ca6215aedb8318e f6a4f2820ad160925e8ec568861c70965f94a48e M	src/main/java/org/apache/commons/math3/optimization/direct/CMAESOptimizer.java
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efa9de05114492ca38cf4739a07339f5ad6faddc
1348237057
Gilles Sadowski
MATH-864
Fixed missing "repair" of a point that lies outside the boundaries. Thanks
to Frank Hessen for the report and for pinpointing the cause of the problem.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1388517 13f79535-47bb-0310-9956-ffa450edef68

efa9de05114492ca38cf4739a07339f5ad6faddc
:100644 100644 4f23f92f1fd064579cc67d0dd10d98dba044549f 7bf77019ee6be85b516f9b9423c270d8a37ce8c9 M	src/changes/changes.xml
:100644 100644 d01cd158c73871a65142e135ca34566fe80d7bfa b54cb374455bc5169e5461e70ca6215aedb8318e M	src/main/java/org/apache/commons/math3/optimization/direct/CMAESOptimizer.java
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5a50073d07ca309d78cfc4e071f4bbe051bdbd40
1348224150
Gilles Sadowski
MATH-863
Patch provided by Julien Anxionnat:
 * method name change,
 * bug fix and unit test for "dotProduct" (instance method).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1388406 13f79535-47bb-0310-9956-ffa450edef68

5a50073d07ca309d78cfc4e071f4bbe051bdbd40
:100644 100644 096818c6dbef106fee7965ee3523ed66cee4987f 1eefdfa524f797cc32a50ace07378d1a9cd5b1e1 M	src/main/java/org/apache/commons/math3/complex/Quaternion.java
:100644 100644 78bd99db252aa15c68895deaf6803a1a82127f80 d199f40c8e83842cdd6417b34776fb5acb6f931d M	src/test/java/org/apache/commons/math3/complex/QuaternionTest.java

dea09c7f9d60fc2061ba4977dfafb5b008aa9c00
1348192566
Sebastien Brisard
In AbstractRealMatrix, removed orphan javadoc comment.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1388298 13f79535-47bb-0310-9956-ffa450edef68

dea09c7f9d60fc2061ba4977dfafb5b008aa9c00
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d5a9dabcf63559808000a60d59da71c4e8bd95c4
1348192408
Sebastien Brisard
In AbstractRealMatrix, removed empty abstract method copy() (specified in interface RealMatrix).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1388296 13f79535-47bb-0310-9956-ffa450edef68

d5a9dabcf63559808000a60d59da71c4e8bd95c4
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:100644 100644 782f15e55e02d1cb640e2846243d2280c45749c6 436db7ac7c8e2f9978f38075967382fe122f05dd M	src/main/java/org/apache/commons/math3/linear/Array2DRowRealMatrix.java
:100644 100644 c7f6391eca2d10e98449ed8222dcf64f62b052cb a40950ef848faf50333318f4206ed0459b352ffb M	src/main/java/org/apache/commons/math3/linear/BlockRealMatrix.java
:100644 100644 ef16fd8d95f9288f18b26cb4c81931c31bd8f92c 4177dca512e1c2fb4efc9d5460a782848d1e4fa8 M	src/main/java/org/apache/commons/math3/linear/OpenMapRealMatrix.java

479ef5d45a105d19fb3715abc7fdecadd5b0a7b3
1348192191
Sebastien Brisard
Removed some @Override tags, which have become illegal following some changes in r1388154.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1388294 13f79535-47bb-0310-9956-ffa450edef68

479ef5d45a105d19fb3715abc7fdecadd5b0a7b3
:100644 100644 04ba0b2e0119d48e79a374a7e57f1b3cea19821b c7f6391eca2d10e98449ed8222dcf64f62b052cb M	src/main/java/org/apache/commons/math3/linear/BlockRealMatrix.java
:100644 100644 6c7bf51a468696fb9c1c3e9478112f98c16a29c2 ef16fd8d95f9288f18b26cb4c81931c31bd8f92c M	src/main/java/org/apache/commons/math3/linear/OpenMapRealMatrix.java

8ae7ff26d78a1706ea4748813a9ccf0bec0544e8
1348167045
Sebastien Brisard
MATH-854
  - filled the "throws" clause of Array2DRowRealMatrix,
  - corrected some method signatures in RealMatrix and AbstractRealMatrix accordingly,
  - in AbstractRealMatrix, removed "abstract implementations" of some methods specified in interface RealMatrix, as they serve no purpose.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1388154 13f79535-47bb-0310-9956-ffa450edef68

8ae7ff26d78a1706ea4748813a9ccf0bec0544e8
:100644 100644 8de934e486fb9aca9f6e5701072341009cd9d195 769d3b782b48a3bc5a9d993e23ccb80973695a9d M	src/main/java/org/apache/commons/math3/linear/AbstractRealMatrix.java
:100644 100644 f5502768663042f0e8f53c21b4b7d7a7d24b9e8a 782f15e55e02d1cb640e2846243d2280c45749c6 M	src/main/java/org/apache/commons/math3/linear/Array2DRowRealMatrix.java
:100644 100644 5417efa52bfa7a47951c7beb877f6cceb4bf5ec3 40ba4bd892d749e2bf0444890feeced6cbb8cdf3 M	src/main/java/org/apache/commons/math3/linear/RealMatrix.java

4a8363f975df9c40b93f2ddc90c203d92d0cd3f4
1348158106
Gilles Sadowski
MATH-863
New "Quaternion" class. Thanks to Julien Anxionnat.
After applying the original patch, the following changes were made:
* Renamed the "static" quaternion instances ("PLUS_" prefix removed).
* Removed some (syntactic sugar) methods; removed or modified corresponding
  unit tests.
* Made the redundant accessors call the "canonic" ones.
* Removed the default tolerance and added an explicit tolerance parameter
  in methods that depend on equality testing.
* When a "ZeroException" is thrown, the actual value of the norm is provided
  in the detailed message (as the implementation actually does not use a
  strict comparison with 0).
* Added "equals(Object)" and "hashCode" methods.
* Javadoc and formatting. Added license header.
* Removed "toString" documentation (as this representation should not be
  binding). Changed the representation to not use a comma.
* Renamed "scalarMultiply" to "multiply".
* More stringent tolerance used in the unit tests assertions, whenever
  possible.
* Added unit tests.



git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1388099 13f79535-47bb-0310-9956-ffa450edef68

4a8363f975df9c40b93f2ddc90c203d92d0cd3f4
:100644 100644 211b5d4d360598945e1f21e9379d8f8fbe95a2a7 4f23f92f1fd064579cc67d0dd10d98dba044549f M	src/changes/changes.xml
:000000 100644 0000000000000000000000000000000000000000 096818c6dbef106fee7965ee3523ed66cee4987f A	src/main/java/org/apache/commons/math3/complex/Quaternion.java
:100644 100644 27c21fbc37b0042ab99241e0593279a047c12f36 93c57e616b69e0a8855b1e1fffdcf49ca4a2aaaf M	src/main/java/org/apache/commons/math3/exception/util/LocalizedFormats.java
:100644 100644 7a18b8fde6302f58cd5dba28a8f3d292e98ca5f9 0cb7bba3c0bae392eec5489ffacc63a3b8653cfc M	src/main/resources/assets/org/apache/commons/math3/exception/util/LocalizedFormats_fr.properties
:000000 100644 0000000000000000000000000000000000000000 78bd99db252aa15c68895deaf6803a1a82127f80 A	src/test/java/org/apache/commons/math3/complex/QuaternionTest.java
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9e9a52e69de2a1b17167a2a992ab0576cb4aa306
1348135777
Gilles Sadowski
MATH-866
Method to test for equality with a given relative tolerance (due to
Yannick Tanguy and Julien Anxionnat). Original patch provided in
JIRA MATH-863 and committed with a few changes.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1387941 13f79535-47bb-0310-9956-ffa450edef68

9e9a52e69de2a1b17167a2a992ab0576cb4aa306
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:100644 100644 ac633711ddccc1a9a79b72b4cc45070ed52d641e 4e405413149aeef899bb3ae7ef69cecfa3055a2c M	src/main/java/org/apache/commons/math3/util/Precision.java
:100644 100644 59a6ce75f92d280f17b46c2a1efbf4ad083688ab b9b6ce465338f147e1f978511f07c2c86107c8ef M	src/test/java/org/apache/commons/math3/util/PrecisionTest.java

72b3ebddf41ac23a55abafdb8d4e7207c44fe6e0
1348068117
Thomas Neidhart
Removed exception from throws clause which is never thrown.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1387637 13f79535-47bb-0310-9956-ffa450edef68

72b3ebddf41ac23a55abafdb8d4e7207c44fe6e0
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3f6052c8ae79e27f04ee7372734f500419d77c7e
1348067743
Thomas Neidhart
Javadoc formatting.

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3f6052c8ae79e27f04ee7372734f500419d77c7e
:100644 100644 ac78433f071a9a2c3b1cac15c91377de9eb62b71 538467c1a19797f9fd5297bee003972ace26560c M	src/main/java/org/apache/commons/math3/util/ContinuedFraction.java

157355ee0f84c1b0174f5eafff99400f33afea54
1348045921
Luc Maisonobe
Typo.

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157355ee0f84c1b0174f5eafff99400f33afea54
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e20f900dc27f21dec436c1edf17b179c591055dd
1347964201
Luc Maisonobe
Removed dead test code.

The code was never used and was an implementation of a now deprecated
interface.

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e20f900dc27f21dec436c1edf17b179c591055dd
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14c51c348f87b8ed3bac36e24a65430761f469bb
1347959274
Luc Maisonobe
Fail early on wrong derivation order.

If the user asks for a derivation order that is too large for the number
of points in the finite differences algorithm, we now detect it before
the first call to the underlying function.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1387064 13f79535-47bb-0310-9956-ffa450edef68

14c51c348f87b8ed3bac36e24a65430761f469bb
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:100644 100644 f2487522bc97c51a19903b98f2a7a748bed2d125 7bc07e6b093267016462fe717a3a26ee00796112 M	src/test/java/org/apache/commons/math3/analysis/differentiation/FiniteDifferencesDifferentiatorTest.java

ff01266fed2090e0c5526e48e70bfcb955e650dd
1347950313
Sebastien Brisard
MATH-854: populated throws clause of AbstractRealMatrix.

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ff01266fed2090e0c5526e48e70bfcb955e650dd
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:100644 100644 ada9873f4c6746396e5ff79b8fdd2344a91377e1 cdb86496cb72b94307f2af3f3e6bf793dff7ea6d M	src/main/java/org/apache/commons/math3/linear/RealLinearOperator.java
:100644 100644 0f3e61e6d53c7a19c3672817bc58be0a11b73faa 5417efa52bfa7a47951c7beb877f6cceb4bf5ec3 M	src/main/java/org/apache/commons/math3/linear/RealMatrix.java

27df4f9bf3729a3742f6939a3cdc2437509b68ec
1347911673
Thomas Neidhart
Add findbugs exception for RealVector#equals method.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1386794 13f79535-47bb-0310-9956-ffa450edef68

27df4f9bf3729a3742f6939a3cdc2437509b68ec
:100644 100644 fc6e4fcc4566e68e693e8bddde48901d2566c96d 4c5bee4893848656ce6d51a6cf536b693923cabd M	findbugs-exclude-filter.xml

e884a3b6c457b9563864c29673ffd01833f19ea6
1347903767
Luc Maisonobe
Added a FiniteDifferencesDifferentiator class.

This class implements both UnivariateFunctionDifferentiator,
UnivariateVectorFunctionDifferentiator and
UnivariateMatrixFunctionDifferentiator. It is not limited in the
derivation order, but checks the order is consistent with the number of
points. Typically, attempting to extract 5th derivative from a 3 points
scheme will not work (a NumberIsTooLargeException will be thrown,
referencing the derivation order).

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e884a3b6c457b9563864c29673ffd01833f19ea6
:000000 100644 0000000000000000000000000000000000000000 76effb9d60bc900de93a786e3b73e7d3fc35cdeb A	src/main/java/org/apache/commons/math3/analysis/differentiation/FiniteDifferencesDifferentiator.java
:000000 100644 0000000000000000000000000000000000000000 f2487522bc97c51a19903b98f2a7a748bed2d125 A	src/test/java/org/apache/commons/math3/analysis/differentiation/FiniteDifferencesDifferentiatorTest.java

904c30a37a3438675ac99df9ab1f6252d422767d
1347903739
Luc Maisonobe
Added a way to create DerivativeStructure from all derivatives.

In some cases, users may already have all the derivatives available at
once. It was impossible to use this knowledge and create the object, so
users had to user dirty tricks like adding together variables holding
value and zero derivative with variables holding derivatives and zero
value.

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904c30a37a3438675ac99df9ab1f6252d422767d
:100644 100644 d0e00c5d1582836e97e8adb38526037fa80c6d61 a240605fac5d8def88ad909eb3e380d67e933715 M	src/main/java/org/apache/commons/math3/analysis/differentiation/DSCompiler.java
:100644 100644 16346458c7ac449af198353cbd86a6d5a11eed16 01ee4c27f20b3f6fdd5dc64796e137a60f972b1e M	src/main/java/org/apache/commons/math3/analysis/differentiation/DerivativeStructure.java
:100644 100644 e519b4ffd65be3b6fb108b90bc515176e2bcd807 fcd2905f0229569b9ad8519c932ec4aaf2b159d5 M	src/test/java/org/apache/commons/math3/analysis/differentiation/DerivativeStructureTest.java

b02fa4a0e3e94e2600f47d9221f9a03dada72eae
1347903714
Luc Maisonobe
Added differentiator interfaces for vector and matrix functions.

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b02fa4a0e3e94e2600f47d9221f9a03dada72eae
:100644 100644 4d3b41163ca9411bd79ebbb28d7f3b74b2b962a0 16346458c7ac449af198353cbd86a6d5a11eed16 M	src/main/java/org/apache/commons/math3/analysis/differentiation/DerivativeStructure.java
:100644 100644 8b499c69d78392a0c35b877decde8d2e04ecd916 870198227c2309261cd66fc1e58048c6ebd453b9 M	src/main/java/org/apache/commons/math3/analysis/differentiation/UnivariateDifferentiableFunction.java
:100644 000000 ace0e487d1668453e8d12b55a764b44885c164c9 0000000000000000000000000000000000000000 D	src/main/java/org/apache/commons/math3/analysis/differentiation/UnivariateDifferentiator.java
:000000 100644 0000000000000000000000000000000000000000 91943dfadf02052ecbcc918eeabe1f83f21aed33 A	src/main/java/org/apache/commons/math3/analysis/differentiation/UnivariateFunctionDifferentiator.java
:000000 100644 0000000000000000000000000000000000000000 d54c2a37d51342eb509ea72ffe036253fc021cc2 A	src/main/java/org/apache/commons/math3/analysis/differentiation/UnivariateMatrixFunctionDifferentiator.java
:000000 100644 0000000000000000000000000000000000000000 649cc446fb3436dc78d1d07a6057a0b295991db4 A	src/main/java/org/apache/commons/math3/analysis/differentiation/UnivariateVectorFunctionDifferentiator.java
:100644 100644 7fe5ccfe5ff16cbe29df6afa8ed173a711c46a7f 4820ec7fb75ebed139190fe5c3227745b38fdb7e M	src/main/java/org/apache/commons/math3/analysis/differentiation/package-info.java

f1d07456129660bc84e7ec286aa3466cab3308c2
1347903684
Luc Maisonobe
Differentiable function can trigger any MathIllegalArgumentException.

One very important case corresponds to an unsupported derivation order.
The order is not enforced in the API, but is specified as the properties
of the DerivativeStructure argument, as well as the number of free
parameters. Some functions have no limitation on this order (typically
functions implemented using only the DerivativeStructure API), but some
functions may limit the derivation order to 1 or 2 as they implement the
differentiation themselves or through finite differences.

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f1d07456129660bc84e7ec286aa3466cab3308c2
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:100644 100644 377581b4cf606e50110e207ff51f671e8d28f689 32ce2014ae9066ac95ae9485dc0b276ca2ab5067 M	src/main/java/org/apache/commons/math3/analysis/differentiation/MultivariateDifferentiableVectorFunction.java
:100644 100644 d105780ee0e77910a81e16a6263adf2acb0af89a 8b499c69d78392a0c35b877decde8d2e04ecd916 M	src/main/java/org/apache/commons/math3/analysis/differentiation/UnivariateDifferentiableFunction.java
:100644 100644 fcba44c895e01671edefdb588c8c33fc4cefa821 502794194512266e88f25f4bc029a96adea305a0 M	src/main/java/org/apache/commons/math3/analysis/differentiation/UnivariateDifferentiableMatrixFunction.java
:100644 100644 8593364d03a6fb6b8dd3738fbb860247bdbd5271 13264746d527949e322e75cc75582c7cb8774918 M	src/main/java/org/apache/commons/math3/analysis/differentiation/UnivariateDifferentiableVectorFunction.java

767ba4dfcfb1567d6cbb692ff3e50a8fc4da04e5
1347864484
Sebastien Brisard
Populated throws clause of RealMatrix (MATH-854); javadoc + formatting.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1386486 13f79535-47bb-0310-9956-ffa450edef68

767ba4dfcfb1567d6cbb692ff3e50a8fc4da04e5
:100644 100644 b414a340916bd989ce6c1c349083cd352de7203c 0f3e61e6d53c7a19c3672817bc58be0a11b73faa M	src/main/java/org/apache/commons/math3/linear/RealMatrix.java

7fbec6509f5602c601431e7091becce46047691e
1347833475
Phil Steitz
Added missing throws declarations and fixed javadoc to match what is actually thrown.  JIRA: MATH-854.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1385386 13f79535-47bb-0310-9956-ffa450edef68

7fbec6509f5602c601431e7091becce46047691e
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:100644 100644 929704d684b1394f3fe6a2f6b6023387dd4d3b9d f42013268f149cec5f4bd817c2a0c6a7a9b63a5d M	src/main/java/org/apache/commons/math3/stat/descriptive/moment/SemiVariance.java
:100644 100644 c28a5aae0d39eaca540378fcb5e88ec0e624cb7c 963aee48dc9dd08dd4f2a339b4fc2dfd9ede9fb0 M	src/main/java/org/apache/commons/math3/stat/descriptive/moment/StandardDeviation.java
:100644 100644 8d4a6e947bc35cf7ce77c53b15e4bd4bdc4823d9 1966f33ccbfdb0dfff5477e633791d0ed0e20099 M	src/main/java/org/apache/commons/math3/stat/descriptive/summary/Product.java
:100644 100644 8ec91e64796fd65e0eb991addf0308928a2fb0fb 9efca68a637546db3e60d7230a14e8bdba0a2d65 M	src/main/java/org/apache/commons/math3/stat/descriptive/summary/Sum.java
:100644 100644 b8c3280ba1502bd790032a2144b43ff3514b9fa3 7507928868c59c547c32cdd1755feb5c4f278d3e M	src/main/java/org/apache/commons/math3/stat/descriptive/summary/SumOfLogs.java
:100644 100644 49a2362b14ae6483444c331c21a61ace682318ec 5d1926f1c503e0fc2d22188bce85b2b0e10b6304 M	src/main/java/org/apache/commons/math3/stat/descriptive/summary/SumOfSquares.java

42ae2c2deede3b92159da8c38effcec45828bfd4
1347814460
Thomas Neidhart
[MATH-666] added to changes.xml.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1385318 13f79535-47bb-0310-9956-ffa450edef68

42ae2c2deede3b92159da8c38effcec45828bfd4
:100644 100644 ac62bdb31197d17f605b84e817f3c17fb5dadc04 7e0df0819e1fa611bc136361955b24c5b5b2be46 M	src/changes/changes.xml

39d423c40411646aa26182266ef727d6bea9e018
1347814232
Thomas Neidhart
[MATH-666] make FieldVector#getData() method deprecated in favor of toArray(), minor formatting, move implementation of SparseFieldVector#getData() to toArray().

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39d423c40411646aa26182266ef727d6bea9e018
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Thomas Neidhart
Removed trailing spaces.

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Thomas Neidhart
Javadoc formatting and fixes.

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Thomas Neidhart
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Thomas Neidhart
Javadoc cleanup of transform package, removed unnecessary paragraph tags.

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Thomas Neidhart
Javadoc cleanup of linear optimization package.

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Thomas Neidhart
Javadoc fixes.

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Thomas Neidhart
Replace deprecated method call.

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Thomas Neidhart
Remove trailing spaces in javadoc.

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Thomas Neidhart
[MATH-854] fill throws clause for genetics package.

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Thomas Neidhart
Javadoc cleanup of genetics package.

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Thomas Neidhart
Javadoc fixes.

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Thomas Neidhart
[MATH-789] Fixed rank calculation in case of dependant columns, added additional constructor that repaces small parameter.

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Luc Maisonobe
Use the new differentiation framework in optimization package.

As a temporary hack for backward compatibility, some optimizers do
provide "optimize" methods which accept the new functions signatures
(i.e. MultivariateDifferentiableXxxFunction), but they do *not*
advertise it in their "implements" clause. The reason for that is that
Java forbid implementing a parameterized interface with two different
parameters. These optimizers already implement the interface with the
older functions signatures, and this cannot be removed as of 3.1.

When 4.0 will be started, the old signatures will be removed, and the
"implements" declarations will be updated.

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:100644 100644 4605b996b777e057b902aaff610a651d8113e9ba 88de7fbd4dfd240891b57584a45875c1ba0e3feb M	src/test/java/org/apache/commons/math3/optimization/general/CircleVectorial.java
:100644 100644 c270c2318a760e8e4796c5629a26df7f7e3600e7 e521fd30317572a87869e59983ff0b94d591bf98 M	src/test/java/org/apache/commons/math3/optimization/general/LevenbergMarquardtOptimizerTest.java
:100644 100644 6d88e504a41e3c3fa1cd2d1cf2232718d8ae1d32 e39b32ddf98198fc3613fcb6b8ee47e62e617076 M	src/test/java/org/apache/commons/math3/optimization/general/MinpackTest.java
:100644 100644 275719a11b8db6052b97a236f8942a9e99f490f2 c80493641847299cb3d21f7091939f243072f01d M	src/test/java/org/apache/commons/math3/optimization/general/NonLinearConjugateGradientOptimizerTest.java
:100644 100644 17b45cd59b981f8a2c8892b5c078436fb6c2cd29 155f4923281a9b014cb2dfd4ce11bb1cbe28f502 M	src/test/java/org/apache/commons/math3/optimization/general/RandomCirclePointGenerator.java
:100644 100644 4396664e9c55d0cf1ba7d4856981bd1c9641b3de 739acfdbc23cf43f86c8219e6fde1a0f9f4f5c69 M	src/test/java/org/apache/commons/math3/optimization/general/StatisticalReferenceDataset.java
:100644 100644 ca053d83405bfcd091b0fea42bc355391bad5d9b db35d479b5d64733524a1cc5cc10689bb9cce0ae M	src/test/java/org/apache/commons/math3/optimization/general/StatisticalReferenceDatasetFactory.java
:100644 100644 5e087c7685b1a15b54a2b8d5ce4923fa608356cc bfc703d6b523259ff2dc0223271e2f8e8f19963b M	src/test/java/org/apache/commons/math3/optimization/general/StraightLineProblem.java

a62ba887c90267162cf572de6286479eb04e02a8
1347653765
Luc Maisonobe
Fixed too large memory consumption in DSCompiler.

Prior to this correction, when at one point in a program a user needed a
derivative with 1 parameter and order 5, and at another point needed a
derivative with 30 parameters and order 1, all DSCompilers from 1x1 to
30x5 were created. As the compilation rules for 30 parameters and 5
order are huge, this failed with memory heap errors after several
gigabytes were consumed.

The fix is to simply build the necessary compilers, and let the array
contain null references for the compilers never used (these null
references will be populated later if the user ask for some intermediate
value that need them, of course).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1384905 13f79535-47bb-0310-9956-ffa450edef68

a62ba887c90267162cf572de6286479eb04e02a8
:100644 100644 597bf17af223610b708f427f6563b415a3d95a5a e45e1c2f6d4c3c9b79ba5ffcfdf1ad02ca418351 M	src/main/java/org/apache/commons/math3/analysis/differentiation/DSCompiler.java

c457f57eafd9ba8411c792a560a80a5fa7ba9e74
1347604926
Sebastien Brisard
  - Populated throws clause of FieldVector, ArrayFieldVector, SparseFieldVector (MATH-854).
  - Added some missing precondition checks.
  - Corrected some mistakes in javadoc.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1384654 13f79535-47bb-0310-9956-ffa450edef68

c457f57eafd9ba8411c792a560a80a5fa7ba9e74
:100644 100644 28b9d738ae4c8c253a022fd50ac2a51dab13cda5 5d014acb4d2414f3d4406220b2aff887af04099d M	src/main/java/org/apache/commons/math3/linear/ArrayFieldVector.java
:100644 100644 befabcbefa005b950ec7a65469a4ba8883c81873 9d64c2504284b134d8b0d073ea9473987004bab9 M	src/main/java/org/apache/commons/math3/linear/FieldVector.java
:100644 100644 99bb9ab7b18c941d5090cf3cb8cf31c25a8fb442 e300766fc1d39b3bd1a4dc2e9198f3e1294dbf82 M	src/main/java/org/apache/commons/math3/linear/SparseFieldVector.java

7f836b587389f84806d61880c08f355ca8ff01fb
1347562851
Sebastien Brisard
MATH-854: in FieldVector and ArrayFieldVector, reverted to r1383770.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1384471 13f79535-47bb-0310-9956-ffa450edef68

7f836b587389f84806d61880c08f355ca8ff01fb
:100644 100644 9557be77bd70b0ba6657f1322ab4fbe74b2f62a3 28b9d738ae4c8c253a022fd50ac2a51dab13cda5 M	src/main/java/org/apache/commons/math3/linear/ArrayFieldVector.java
:100644 100644 8b6e4f23ffa9606d91868306944295a3f5ed18e8 befabcbefa005b950ec7a65469a4ba8883c81873 M	src/main/java/org/apache/commons/math3/linear/FieldVector.java

0b5b0f6d0264de2749a49ab6a45d677e75cce1b6
1347560465
Thomas Neidhart
Fixed typo and formatting in changes.xml.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1384454 13f79535-47bb-0310-9956-ffa450edef68

0b5b0f6d0264de2749a49ab6a45d677e75cce1b6
:100644 100644 2d88f97b05963a25a853465ab820e469168f6fc0 ac62bdb31197d17f605b84e817f3c17fb5dadc04 M	src/changes/changes.xml

ede9b56a7bc814fb01af4723dab9b245614aaff0
1347560316
Thomas Neidhart
Fixed typo in changes.xml.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1384451 13f79535-47bb-0310-9956-ffa450edef68

ede9b56a7bc814fb01af4723dab9b245614aaff0
:100644 100644 04645055242e5909ad304067c329c953e3120c97 2d88f97b05963a25a853465ab820e469168f6fc0 M	src/changes/changes.xml

468ed8550b7759858a4dc59d694859a8ae7d35f0
1347549183
Luc Maisonobe
Fixed an error in rectangular Cholesky decomposition.

JIRA: MATH-789

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1384363 13f79535-47bb-0310-9956-ffa450edef68

468ed8550b7759858a4dc59d694859a8ae7d35f0
:100644 100644 ec44dd50f4ccf7a9ffb6ceecbe6dcd6e265993c5 04645055242e5909ad304067c329c953e3120c97 M	src/changes/changes.xml
:100644 100644 38584d420d957cf20f11fbce9cbc1b4657aca697 aba7b98062491eac8e1a9f2e07e7cb842809444a M	src/main/java/org/apache/commons/math3/linear/RectangularCholeskyDecomposition.java
:000000 100644 0000000000000000000000000000000000000000 6fbfdfd3c7cecd94c0eccdde24325a86cd946680 A	src/test/java/org/apache/commons/math3/linear/RectangularCholeskyDecompositionTest.java
:100644 100644 167382a8f8687083ac3905ae72f35da94b34f768 eba52a387a91c95312b74919b987c4e3d544f96d M	src/test/java/org/apache/commons/math3/random/CorrelatedRandomVectorGeneratorTest.java

dbb408e860279d92b7502474328bb5385c2d9243
1347516665
Sebastien Brisard
MATH-854: document all exceptions in ArrayFieldVector.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1384212 13f79535-47bb-0310-9956-ffa450edef68

dbb408e860279d92b7502474328bb5385c2d9243
:100644 100644 28b9d738ae4c8c253a022fd50ac2a51dab13cda5 9557be77bd70b0ba6657f1322ab4fbe74b2f62a3 M	src/main/java/org/apache/commons/math3/linear/ArrayFieldVector.java

adb0bc7bbcf177fe04046ea7f02d69a5bf1523ce
1347516606
Sebastien Brisard
MATH-854: in interface FieldVector, some more exceptions are *documented* (as recommendations), but not *specified*.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1384211 13f79535-47bb-0310-9956-ffa450edef68

adb0bc7bbcf177fe04046ea7f02d69a5bf1523ce
:100644 100644 25ffd8b2e68e2f6d9afe0b233895ea0784c08eb2 8b6e4f23ffa9606d91868306944295a3f5ed18e8 M	src/main/java/org/apache/commons/math3/linear/FieldVector.java

410bf24ecfbdc7c07027a8be4236ea8dc0efdda6
1347475066
Sebastien Brisard
MATH-854: in interface FieldVector, replaced throws statements with javadoc comments.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1384082 13f79535-47bb-0310-9956-ffa450edef68

410bf24ecfbdc7c07027a8be4236ea8dc0efdda6
:100644 100644 befabcbefa005b950ec7a65469a4ba8883c81873 25ffd8b2e68e2f6d9afe0b233895ea0784c08eb2 M	src/main/java/org/apache/commons/math3/linear/FieldVector.java

062250d965851c780eb3015d131a00551640db44
1347449003
Luc Maisonobe
Added a wrapper class to compute Jacobian from differentiable function.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1383886 13f79535-47bb-0310-9956-ffa450edef68

062250d965851c780eb3015d131a00551640db44
:000000 100644 0000000000000000000000000000000000000000 07b13d570dc497d7113e3126d0ee229a53fc1745 A	src/main/java/org/apache/commons/math3/analysis/differentiation/JacobianFunction.java
:000000 100644 0000000000000000000000000000000000000000 ecfda347bfeccfcfbc5d88596b129b42a499e131 A	src/test/java/org/apache/commons/math3/analysis/differentiation/JacobianFunctionTest.java

7366eb6598a0c4c46745739cbce21230460d7cf6
1347448976
Luc Maisonobe
Added a wrapper class to compute gradient from differentiable function.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1383885 13f79535-47bb-0310-9956-ffa450edef68

7366eb6598a0c4c46745739cbce21230460d7cf6
:000000 100644 0000000000000000000000000000000000000000 cc22c69581a9e6cf917acd9f916efbab0a837637 A	src/main/java/org/apache/commons/math3/analysis/differentiation/GradientFunction.java
:000000 100644 0000000000000000000000000000000000000000 7faf9b6c86e9ddf1da33c3c60100ab34869ffc53 A	src/test/java/org/apache/commons/math3/analysis/differentiation/GradientFunctionTest.java

066aae5a2d5b923d41f4ff62ff6ca0b37fee47b1
1347440132
Luc Maisonobe
Deprecated DifferentiableUnivariateMatrixFunction interface.

This interface is in fact never used in the library...

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1383854 13f79535-47bb-0310-9956-ffa450edef68

066aae5a2d5b923d41f4ff62ff6ca0b37fee47b1
:100644 100644 2ddfc902721749a6a3179ded9b089aab52c886ab a4c052ab41591e4b7d5f8ec10d93e63eab1d19cf M	src/main/java/org/apache/commons/math3/analysis/DifferentiableUnivariateMatrixFunction.java

7f978aeee9a6041dcbf3df09792301b41c0539f6
1347440113
Luc Maisonobe
Fixed typo in interface name.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1383853 13f79535-47bb-0310-9956-ffa450edef68

7f978aeee9a6041dcbf3df09792301b41c0539f6
:100644 000000 df58427e5c24abdf6b47e3c3ef28a12a340e26d7 0000000000000000000000000000000000000000 D	src/main/java/org/apache/commons/math3/analysis/differentiation/UnivariateDiferentiableMatrixFunction.java
:000000 100644 0000000000000000000000000000000000000000 fcba44c895e01671edefdb588c8c33fc4cefa821 A	src/main/java/org/apache/commons/math3/analysis/differentiation/UnivariateDifferentiableMatrixFunction.java

b586cfa8faf6547cb8c584dbdcf3045830156165
1347440080
Luc Maisonobe
Deprecated DifferentiableUnivariateVectorFunction.

This interface is in fact never used in the library...

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1383852 13f79535-47bb-0310-9956-ffa450edef68

b586cfa8faf6547cb8c584dbdcf3045830156165
:100644 100644 03c93b25218c81178ad4dc8769626cde19e937c8 d025a309af5fd9bdc050c00d8dfd2a4c2597eb36 M	src/main/java/org/apache/commons/math3/analysis/DifferentiableUnivariateVectorFunction.java

ca031b9f6bab7d0cae8be1cf9d72eec935743413
1347438850
Luc Maisonobe
Deprecated DifferentiableUnivariateFunction.

The interface and its implementations should be removed for 4.0. The
remaining uses in the library are only there for compatibility.
Everything else now use the new UnivariateDifferentiableFunction
interface and DerivativeStructure, which allow both arbitrary
differentiation order and arbitrary number of free parameters.

The next step for 3.1 is to replace the multidimensional functions (i.e.
multivariate functions, vector valued functions and matrix valued
functions).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1383845 13f79535-47bb-0310-9956-ffa450edef68

ca031b9f6bab7d0cae8be1cf9d72eec935743413
:100644 100644 4975f2d341c2151832723ae26f00b7efcfc5ff16 cf8e4ed104fc72a6083cd0f9bd856d165dcde9d9 M	src/main/java/org/apache/commons/math3/analysis/DifferentiableUnivariateFunction.java
:100644 100644 5679e7a4621e8641536eab07310bc2088af4ddac b9b3dcedc63ffe01f5f99ce9b88b096b56948eab M	src/main/java/org/apache/commons/math3/analysis/FunctionUtils.java
:100644 100644 e25bb88ae67fb901531e03d6165da1798b8ee3aa 75cb1bc55492b5474eece7e4bedcc0f69e039064 M	src/test/java/org/apache/commons/math3/analysis/FunctionUtilsTest.java
:100644 100644 b7a68884a442ca0633be03de341b99006f704b91 c6ad2e827f859a2433012c686bcdfcc8a000be11 M	src/test/java/org/apache/commons/math3/analysis/SumSincFunction.java
:100644 100644 d637d917416cae6ced7e8ad8cfb78a9ea0c37a16 797edc601e53cb191d85aed881b04180695f81ab M	src/test/java/org/apache/commons/math3/analysis/solvers/BrentSolverTest.java

f2288dd9227835f300a131f501c4420fa3f2d928
1347425018
Sebastien Brisard
Removed LocalizedFormats.ENTRY previously introduced in r1383747, as LocalizedFormats.INDEX will do nicely.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1383770 13f79535-47bb-0310-9956-ffa450edef68

f2288dd9227835f300a131f501c4420fa3f2d928
:100644 100644 acaf826d146035ff0b0c522a4b41130cf1bdec67 27c21fbc37b0042ab99241e0593279a047c12f36 M	src/main/java/org/apache/commons/math3/exception/util/LocalizedFormats.java
:100644 100644 fb213d4894ec3453fd2024fb1b06879a197987c4 28b9d738ae4c8c253a022fd50ac2a51dab13cda5 M	src/main/java/org/apache/commons/math3/linear/ArrayFieldVector.java
:100644 100644 15a16ce2d871ee0ebfcca21da3aa3a740120ca4a 7a18b8fde6302f58cd5dba28a8f3d292e98ca5f9 M	src/main/resources/assets/org/apache/commons/math3/exception/util/LocalizedFormats_fr.properties
:100644 100644 8f8928ebeaa7736a46fb0269e8d1eebb8f914312 22a0a52882e7d9867ab8ebc7dc3945975b2701f9 M	src/test/java/org/apache/commons/math3/exception/util/LocalizedFormatsTest.java

b34c6fd61d339d07b7fac0e971481d3b27b81f95
1347424067
Sebastien Brisard
MATH-854: fill the "throws" clause of FieldVector, ArrayFieldVector.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1383760 13f79535-47bb-0310-9956-ffa450edef68

b34c6fd61d339d07b7fac0e971481d3b27b81f95
:100644 100644 98aca4013354aa05d392dd3d7ba85278c878305c fb213d4894ec3453fd2024fb1b06879a197987c4 M	src/main/java/org/apache/commons/math3/linear/ArrayFieldVector.java
:100644 100644 5d10f197cc76673929dc934d828167465e2239b0 befabcbefa005b950ec7a65469a4ba8883c81873 M	src/main/java/org/apache/commons/math3/linear/FieldVector.java

b9c9a47a0e489cf61feaae9889963b8d16ec61d9
1347421591
Sebastien Brisard
Added new localized error message "entry {0}" to signal null entries in FieldVectors.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1383747 13f79535-47bb-0310-9956-ffa450edef68

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78bc8d3860c9f3fe1e5e73974605b2215fc210be
1347419926
Sebastien Brisard
MATH-854: fill the "throws" clause of RealVector.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1383743 13f79535-47bb-0310-9956-ffa450edef68

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e1925c967b668ab656acbc044b00b1338a65fce7
1347377617
Luc Maisonobe
Added arbitrary differentiation order for Hermite interpolator.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1383451 13f79535-47bb-0310-9956-ffa450edef68

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6f311353290e589854729616477f3088ede10efa
1347377590
Luc Maisonobe
Added interfaces for differentiable multidimensional functions.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1383450 13f79535-47bb-0310-9956-ffa450edef68

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8176f04977a8b69d2b8b33ec2ffad1b36547c847
1347375399
Luc Maisonobe
Renamed UnivariateDifferentiable into UnivariateDifferentiableFunction.

The "Function" part of the name was forgotten when this new interface
was created a few weeks ago, for replacing the older
DifferentiableUnivariateFunction.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1383441 13f79535-47bb-0310-9956-ffa450edef68

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1347374564
Luc Maisonobe
Added arbitrary order derivative for polynomials in Newton form.

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9fb6d6329b42c3676933a91898d37549fb62c528
1347352672
Luc Maisonobe
added a few UML diagrams.
The diagrams are not used in the documentation yet, they are only kept for reference and may be removed later.

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1347303954
Sebastien Brisard
MATH-854: fill the "throws" clause of ArrayFieldVector.

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1347298973
Sebastien Brisard
Removed unused @throws Javadoc tag.

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1347298311
Sebastien Brisard
MATH-854: fill the "throws" clause of FieldVector.

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1347288483
Luc Maisonobe
Updated throws declarations for transform package.

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1347288465
Luc Maisonobe
Updated throws declaration for random package (and part of
distribution).

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c1de4ed29d80cd657d4e3c46a934b9fc91b24545
1347288439
Luc Maisonobe
Replaced factory using Object with type-safe version.

Only two types of adapters were used: double array and stream, in a
private internal factory. This has been suppressed so each adapter is
bioth type safe and returns only the exceptions it can trigger.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1382902 13f79535-47bb-0310-9956-ffa450edef68

c1de4ed29d80cd657d4e3c46a934b9fc91b24545
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c422db8ac25e93712db663f1e9701d44458a90e1
1347287847
Luc Maisonobe
Removed too aggressive checks for impossible errors.

The checks were added recently as part of throws declaration updates. In
theses cases, the exception cannot be triggered. No throws declarations
are needed and in fact wrapping the impossible exceptions in
MathInternalError is simply too much.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1382887 13f79535-47bb-0310-9956-ffa450edef68

c422db8ac25e93712db663f1e9701d44458a90e1
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e4ed959be81916b9a1aa6cf68d80fdccf71bd7c8
1347209007
Phil Steitz
Added missing throws declarations. JIRA: MATH-854.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1382537 13f79535-47bb-0310-9956-ffa450edef68

e4ed959be81916b9a1aa6cf68d80fdccf71bd7c8
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:100644 100644 1c3cd72d7228e00e7321ceb197d77fa42bedc946 3dc4eb5861d21d28c9a7842b000dfdc82fb23e69 M	src/main/java/org/apache/commons/math3/stat/descriptive/rank/Min.java
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472da042032e8f2f0d016cdfd2f4347b788a2371
1347187255
Gilles Sadowski
MATH-855
In case of tie, return the "oldest" point.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1382441 13f79535-47bb-0310-9956-ffa450edef68

472da042032e8f2f0d016cdfd2f4347b788a2371
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dc51e1e5c307ca480722b6666e69fac51e65b711
1347155254
Phil Steitz
Added missing throws declarations, suppressed warnings. JIRA: MATH-854.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1382389 13f79535-47bb-0310-9956-ffa450edef68

dc51e1e5c307ca480722b6666e69fac51e65b711
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b56fe1794ec4e8864500a1ae32f96db0da212078
1347144971
Phil Steitz
Removed unused imports.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1382382 13f79535-47bb-0310-9956-ffa450edef68

b56fe1794ec4e8864500a1ae32f96db0da212078
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b0cba9a79ee99b09958dec8e40c75bed47b7f780
1347142532
Phil Steitz
Clarified definition of isSupportXxxBoundInclusive in RealDistribution interface,
made code consistent with the definition, and deprecated these methods, marking
for removal in 4.0.
JIRA: MATH-859


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1382380 13f79535-47bb-0310-9956-ffa450edef68

b0cba9a79ee99b09958dec8e40c75bed47b7f780
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51461f1c9ce91953ed3e6dbd01b0e2c8bbd75da2
1347126488
Phil Steitz
Eliminated no longer accurate implementation reference.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1382335 13f79535-47bb-0310-9956-ffa450edef68

51461f1c9ce91953ed3e6dbd01b0e2c8bbd75da2
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40007fe06a6c921391c098f9bbb0b3f5147bae87
1347125267
Phil Steitz
Added throws declarations, improved javadoc, made Kurtosis increment consistent with other moment statistics. JIRA: MATH-854.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1382332 13f79535-47bb-0310-9956-ffa450edef68

40007fe06a6c921391c098f9bbb0b3f5147bae87
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dc68883ad75db118a7239e56f1128d7db4063587
1347057301
Gilles Sadowski
MATH-854
Populate "throws" clause.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1382197 13f79535-47bb-0310-9956-ffa450edef68

dc68883ad75db118a7239e56f1128d7db4063587
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:100644 100644 a0a53503abb2da89d58d76cb3b57ff88d363ee4a 6f8aa17bd4af867629fdf44090165abd81dc1e4a M	src/main/java/org/apache/commons/math3/analysis/integration/gauss/GaussIntegrator.java
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f1b04e990f4fc86544b6230fab1aa8ecfb74fbb1
1347032620
Gilles Sadowski
MATH-855 (second take).
Best point must be returned.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1382070 13f79535-47bb-0310-9956-ffa450edef68

f1b04e990f4fc86544b6230fab1aa8ecfb74fbb1
:100644 100644 cff5bfd33b6a473d369b5ed2b03bb732244b050b 25f2f5049dd846e41a0829b1c903e28ae12704f2 M	src/main/java/org/apache/commons/math3/optimization/univariate/BrentOptimizer.java
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2b4c1f87a73448323d21cd459f967013a41870ca
1346960555
Sebastien Brisard
MATH-854: fill the "throws" clause of OpenMapRealVector.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1381730 13f79535-47bb-0310-9956-ffa450edef68

2b4c1f87a73448323d21cd459f967013a41870ca
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862652d1d052435baf2202a1b3a555da1d94f56d
1346881962
Gilles Sadowski
Javadoc.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1381410 13f79535-47bb-0310-9956-ffa450edef68

862652d1d052435baf2202a1b3a555da1d94f56d
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90d3cc41ac5f8f40bcb155794cabf254068f85ee
1346875567
Thomas Neidhart
Add throw declarations for filter package, javadoc formatting.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1381332 13f79535-47bb-0310-9956-ffa450edef68

90d3cc41ac5f8f40bcb155794cabf254068f85ee
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a12ed0e81638d51913b3dfc7a099c80ed2e7eab0
1346872937
Thomas Neidhart
Javadoc formatting cleanup.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1381310 13f79535-47bb-0310-9956-ffa450edef68

a12ed0e81638d51913b3dfc7a099c80ed2e7eab0
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2569f0687e8ef28d2c4f39191f23079bfeb46f85
1346869828
Luc Maisonobe
Added throw declarations for package dfp.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1381285 13f79535-47bb-0310-9956-ffa450edef68

2569f0687e8ef28d2c4f39191f23079bfeb46f85
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0aa7e7ab86c20e809b728bce3306be6a8288bab6
1346869808
Luc Maisonobe
Added throw declarations for package complex.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1381284 13f79535-47bb-0310-9956-ffa450edef68

0aa7e7ab86c20e809b728bce3306be6a8288bab6
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4fdc478a4274a3408afc995c505e7e804cb0da69
1346869787
Luc Maisonobe
Added throw declarations for package util.

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1346869434
Luc Maisonobe
Added throw declarations for FieldElements.

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484138d2ad3e36d65ede8664bbbe6bd849bbfd63
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1346856706
Gilles Sadowski
Update for MATH-841 and MATH-855.


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1346856419
Gilles Sadowski
MATH-841
Performance improvement in method "gcd(int, int)" (~2 to 4 times faster than
the previous implementation). Thanks to Sebastien Riou.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1381206 13f79535-47bb-0310-9956-ffa450edef68

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1346854964
Gilles Sadowski
MATH-855
The best point is sometimes not the last one evaluated.


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1346828025
Phil Steitz
Added density - cdf consistency test.

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Sebastien Brisard
MATH-854: fill the throws clause of all methods.

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Sebastien Brisard
MATH-854: fill the throws clause of all methods.


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1346644463
Sebastien Brisard
MATH-854: populate the throws clause in package o.a.c.m.linear.


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1346595772
Luc Maisonobe
Populate throws declarations for geometry package.

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1346595660
Luc Maisonobe
populate throws declaration for ODE package

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1346595595
Luc Maisonobe
Updated error message with new parameters.

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1346595550
Luc Maisonobe
Javadoc formatting.

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7e4483e49438e7beac60d99adbeecf924c02a34c
1346543810
Gilles Sadowski
"final" keyword.


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67502e7c76f184c27e3f70912952e240e7132078
1346543692
Gilles Sadowski
MATH-854
Populate "throws" clause.


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2e4cf965daad94ba0e3b7cea6981766c4c0281bc
1346442030
Gilles Sadowski
MATH-854
Populate "throws" clause.


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eb815163169c9c9bcf7275969e6eb5e20e421475
1346382843
Sebastien Brisard
MATH-849: added new test in GammaDistributionTest to check that new
implementation of Gamma.logGamma does not compromise the resolution of
MATH-735.


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1346382736
Sebastien Brisard
MATH-849: changed boundary case x = 8.0 in double Gamma.logGamma(double).


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7be3196ed5c7f8665d95307afd03f0a6f5277cc4
1346381484
Sebastien Brisard
Formatting.


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1346381309
Sebastien Brisard
MATH-849: implementation of double Gamma.gamma(double).


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1346379205
Sebastien Brisard
MATH-849: further tests of double Gamma.logGamma(double).


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1346378471
Sebastien Brisard
MATH-849: unit tests for double Gamma.logGamma1p(double).


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1346378352
Sebastien Brisard
Formatting (removed Eclipse tags @formatter:on, @formatter:off)


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1346378270
Sebastien Brisard
MATH-849: unit tests for double Gamma.invGamma1pm1(double).


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Sebastien Brisard
Formatting.


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e1ba17045ed04409f6582b880e17358ebe7a5431
1346376707
Sebastien Brisard
Refined the test of logGamma(x) near x = 1.0, 2.0 and 3.0, which were difficult
zones in the previous (Lanczos) implementation.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1379247 13f79535-47bb-0310-9956-ffa450edef68

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039828a9e96020c202ec074a5998afb18eb85d98
1346368737
Gilles Sadowski
MATH-854
Populate "throws" clause.


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fc502e010f685cb0bc5d125aaaae52890a16848a
1346221221
Sebastien Brisard
MATH-849: new implementation of double Gamma.logGamma(double x) for x < 8.0.
This greatly improves the accurarcy, from more than 130 ulps down to 3 ulps.
Unit tests updated accordingly.



git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1378450 13f79535-47bb-0310-9956-ffa450edef68

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c2d90f7906fa89be7e1729fb0e2b059060f4a4bf
1346214527
Sebastien Brisard
In GammaDistributionTest, inlined previous implementation of
double Gamma.logGamma(doubl)) in order to allow for comparison with new
implementation.
This is in preparation of MATH-849.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1378440 13f79535-47bb-0310-9956-ffa450edef68

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1346153735
Gilles Sadowski
Re-instated "dotProduct" method whose removal breaks backward compatibility.


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1345903902
Thomas Neidhart
Fixed typo, indentation

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ce9df69d21cab16658506653654a588adab47cf5
1345889160
Luc Maisonobe
Integrated the new differentiation framework in the solvers package.

As discussed on the developers mailing list, a separate
NewtonRaphsonSolver has been set up using the new interfaces, and the
older NewtonSolver has been deprecated. It should be removed in 4.0.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1377245 13f79535-47bb-0310-9956-ffa450edef68

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1345889113
Luc Maisonobe
Removed compilation warnings related to deprecated classes.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1377244 13f79535-47bb-0310-9956-ffa450edef68

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e3d956a7654bdb7e1cae72a75ae19911d6b7755f
1345789414
Sebastien Brisard
In Gamma.logGamma, replaced local variable g with class variable LANCZOS_G.


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5b46fd029ccb9e834d6378d1fabd9e643dcc29d0
1345576676
Phil Steitz
Added deprecation that should have been included in r1375192.  JIRA: MATH-850.

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ef55f44727f593b065a22200c0d30363944d3fbc
1345492437
Phil Steitz
Added RandomDataGenerator to replace RandomDataImpl and deprecated
RandomData interface and RandomDataImpl class. Deprecated
nextInversionDeviate methods from RandomDataImpl class. Ensured that
all nextXxx methods in RandomDataImpl/RandomDataGenerator use the
configured RandomGenerator.

JIRA: MATH-850

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1375192 13f79535-47bb-0310-9956-ffa450edef68

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c0e9a7806e6080ed33c03ea833b81d69f6bd817d
1345434058
Sebastien Brisard
MATH-849: new unit test showing the relative accuracy of
Gamma.logGamma(double).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1374909 13f79535-47bb-0310-9956-ffa450edef68

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35ad54c1453afa75c0074cafb30722b967d8a42c
1345313471
Luc Maisonobe
use the new function objects were possible in tests.

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4a5f72049c95483fc8f420227d40d22f7cbdd728
1345313434
Luc Maisonobe
the regular function objects (Acos, Sqrt, ...) now implement the new UnivariateDifferentiable interface.

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Luc Maisonobe
Polynomials now implement the new UnivariateDifferentiable interface.

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Luc Maisonobe
added utilities for differentiable functions

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Luc Maisonobe
renamed UnivariateDifferential into UnivariateDifferentiable

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Luc Maisonobe
Typo in comment.

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1345313282
Luc Maisonobe
Added compose to the public API of DerivativeStructure.

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1345252220
Gilles Sadowski
Javadoc.


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1345252165
Gilles Sadowski
Code cleanup: Moved all computations to the constructor, allowing the class
to be immutable.


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Sebastien Brisard
Checkstyle: missing license.


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Sebastien Brisard
MATH-843: integrated changes suggested by Dominik Gruntz.


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Gilles Sadowski
Code cleanup: moved all computations to the constructor, allowing to make
the class immutable.


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Gilles Sadowski
Code comment.


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Luc Maisonobe
Added log10 to DerivativeStructure and DSCompiler.

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Luc Maisonobe
Changed parameters name for consistency with getters and DSCompiler.

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1345152914
Gilles Sadowski
Change suggested by "FindBugs".


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Gilles Sadowski
Javadoc.


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a79cdc8325ad3c4253edad3ce25c4eb1f1195f5f
1345150839
Gilles Sadowski
Precondition check.


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996dd998e3081e4a842017b8ebcdae9b6059b530
1345149839
Gilles Sadowski
MATH-844
Generate an exception when the parameter guessing procedure cannot perform
correctly (in rare ill-conditioned cases).


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Thomas Neidhart
Disabled random data tests for eigen decomposition, improved checkUnsymmetricMatrix helper.

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Luc Maisonobe
Added toDegrees and toRadians to DerivativeStructure.

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Luc Maisonobe
Added signum to DerivativeStructure.

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Luc Maisonobe
Added rint and round to DerivativeStructure.

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6c3ba12ac9b5ffaf8fc28a973490e8564d5eac17
1345111646
Luc Maisonobe
Added getExponent, scalb and hypot to DerivativeStructure.

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Luc Maisonobe
Added expm1 and log1p to DSCompiler and DerivativeStructure.

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Luc Maisonobe
Added copySign to DerivativeStructure.

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Luc Maisonobe
Added ceil and floor to DerivativeStructure.

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Luc Maisonobe
Added abs to DerivativeStructure.

We handle +0.0/-0.0 correctly, i.e. we flip derivatives sign when value
is negative zero.

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Thomas Neidhart
Fix RealMatrixFormatTests to always use a fixed locale instead of the default one.

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Thomas Neidhart
Use fixed locale for matrix formatter to prevent decimal point problems.

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Gilles Sadowski
Fixed FindBugs warning.


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Thomas Neidhart
Javadoc fixes.

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Luc Maisonobe
Added hyperbolic trigonometric functions and inverses to DSCompiler.

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Luc Maisonobe
Simplified tangent higher derivatives computation.

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Gilles Sadowski
MATH-815
Unit test update (patch provided by Jared Becksfort).


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Luc Maisonobe
Added Taylor expansion for DSCompiler.

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Luc Maisonobe
Added support for atan2 in DSCompiler.

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Gilles Sadowski
Fixed CheckStyle warnings.


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Gilles Sadowski
Code cleanup.


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Luc Maisonobe
Added support for x^y in DerivativeStructure and DSCompiler.

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Luc Maisonobe
Completed support fo asin, acos and atan in DSCompiler.

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Luc Maisonobe
Added forgotten notification of recent changes.

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Luc Maisonobe
New test for sin and cos derivatives.

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Luc Maisonobe
Added Stirling numbers of the second kind in ArithmeticUtils.

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e3ee738d80b84098701979dce7c2fbbdaba165d0
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Luc Maisonobe
Forward the underlying error message when an exception is triggered.

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Luc Maisonobe
Fixed accuracy issues in FastMath.pow(double, int).

The fixed version is slightly slower, but still much faster than
FastMath.pow(double, double). Some random testing showed that the
accuracy is now always better than 0.5ulp, even for large exponent.

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Gilles Sadowski
Code and javadoc cleanup.


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Gilles Sadowski
Unit test for "FastMath.pow(double,int)".


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Luc Maisonobe
added a function to raise a double to an int power

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Luc Maisonobe
partially reverted commit 1370951 as it trashed earlier correction in FastMath

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Gilles Sadowski
MATH-815
Code update. Unit test.


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96dfe1afa1c06fb243e312d3366daf99b88ca7b5
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Luc Maisonobe
Added a new package dealing with differentials.

The package is intended to deals with one or more free parameters and
derivation order 1 or higher.

The core elements are based on Dan Kalman paper "Recursive Multivariate
Automatic Differentiation", Mathematics Magazine, vol. 75, no. 3, June
2002. For efficiency, the recursive structure is compiled as simple
loops once for each pair (number of free parameters, derivation order).

This is work in progress, there are still some features missing even in
the most basic blocks (typically the asin, acos, atan, atant2 and taylor
methods in DSCompiler). There are also still no high level
differentiator implementation.

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019a0421f3a6bfb34faccb9c579dbc6c32f5d3a0
1344435496
Gilles Sadowski
MATH-815
Initial commit. Units test are yet to be added. This version also
contains a bug. Code contributed by Jared Becksfort, included with
modifications. [Cf. comments on JIRA.]


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23beda6ef46c374b90d712e801ed71f07d90fed8
1344375538
Gilles Sadowski
MATH-843
Corrected documentation for "Precision.EPSILON".


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Sebastian Bazley
MIssing @Override

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Sebastian Bazley
MIssing @Override

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Sebastian Bazley
Javadoc fixes (not thrown)

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Sebastian Bazley
Raw types

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1344343256
Sebastian Bazley
Missing @Deprecated

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Sebastian Bazley
Unused imports

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1344343139
Sebastian Bazley
Missing @Deprecated

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1344343119
Sebastian Bazley
Javadoc syntax

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1344343086
Sebastian Bazley
Javadoc syntax

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1344329917
Sebastian Bazley
Add comment as to why equals() and hashCode() are not implemented

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1344254427
Gilles Sadowski
Typo.


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Thomas Neidhart
Added MATH-777 to changes.xml, thanks to Reid Hochstedler.

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1344197008
Thomas Neidhart
[MATH-777] Added OrderedCrossover policy.

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1344196111
Phil Steitz
Fixed failing test.

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1344192414
Thomas Neidhart
[MATH-777] Added CycleCrossover policy.

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1344184372
Thomas Neidhart
Added MATH-828 to changes.xml.

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1344175887
Thomas Neidhart
Fix findbugs warning, use strict comparison for negative values.

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1344175233
Thomas Neidhart
Fixed warnings spotted by checkgilles.

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1344159166
Thomas Neidhart
Fixed findbugs finding when comparing Integer references.

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1344134235
Gilles Sadowski
MATH-840
Fixed invalid argument to "asin" and "acos".


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1344121905
Gilles Sadowski
MATH-740
Grabbing a few percents performance for "log".


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1344109203
Gilles Sadowski
MATH-839
Indicating changes that cannot be performed before 4.0 (new method
"probability(double,double)" can be only added to the interface in
a major release).


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1344108296
Gilles Sadowski
MATH-839
Created new method "probability(double,double)" in implementations were
it it overridden, and deprecated "cumulativeProbability(double,double)".


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1344103619
Gilles Sadowski
MATH-839
Added new method "probability(double, double)" to "AbstractRealDistribution".
Deprecated "cumulativeProbability(double, double)".


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Thomas Neidhart
Added MATH-836 to changes.xml.

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1344027033
Gilles Sadowski
MATH-838
Moved the "probability(double)" method to the parent class.


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7770346b8d548973a61439b74f4782c2b1dfed87
1344023976
Gilles Sadowski
Typo.


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5075b8f98b2f56cdd773f27eba16a2de7f190afa
1344014138
Gilles Sadowski
Javadoc, formatting.


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5075b8f98b2f56cdd773f27eba16a2de7f190afa
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c8cd8da901d339dfd1c9fbd07d37ef9c90221a89
1343945888
Gilles Sadowski
MATH-834
Replaced calls to the various sampling methods in "RandomDataImpl" by their
equivalent "sample" method in the distribution classes.


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1566dd339f6efc2347b0962fac7fce22adbc31ff
1343856267
Thomas Neidhart
[MATH-836] Improve overflow check for negative values in Fraction constructor.

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1566dd339f6efc2347b0962fac7fce22adbc31ff
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5f2077bb774d283e7984a2d5dc0c2759f2954963
1343746681
Gilles Sadowski
MATH-835
Avoid overflow.


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5f2077bb774d283e7984a2d5dc0c2759f2954963
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d3fc5af31eb696af03cfbe2e18584c7e1d307d54
1343677068
Thomas Neidhart
[MATH-828] Add additional heuristic for rare cases in pivotRow selection.

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a55c951a3d573464e3905de7328fcdc487eebfb4
1343675225
Thomas Neidhart
Use a TreeSet instead of an ArrayList when dropping columns after phase 1 of the simplex solver to improve performance.

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16bcfbd887c6f564cb5a43520ad2b809d3219afd
1343563931
Gilles Sadowski
Reverting changes inadvertently committed in revision 1366821.


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043e1d6bd1189948bbcb2daae7c178fa23b571de
1343563548
Gilles Sadowski
MATH-622
Default is now to print 10 fractional digits.


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22ee0f157471d8061f066ead5c8f95d8c6624106
1343497472
Thomas Neidhart
Fixed wrong import for FastMath.

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22ee0f157471d8061f066ead5c8f95d8c6624106
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e1776ba6ae75701bd275edd60356cada29342214
1343493460
Thomas Neidhart
[MATH-828] Fixed numerical instabilities in SimplexSolver leading to unbounded solutions.

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fd2759092b941101d28574bfb00705d2aab9660e
1343401183
Gilles Sadowski
Update "changes" file.


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e434abd116ba6e0dfc54dc70ca956626b8fd07a3
1343400970
Gilles Sadowski
MATH-762
Created an inner class to collect statements that were duplicated.


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f5582b78775e8ab86e42dfad07105b94cf7b16d2
1343309396
Gilles Sadowski
MATH-832
Unit test showing that the issue is invalid: For the function referred to in
the JIRA ticket, "BrentSolver" and "BrentOptimizer" agree: the same value is
found to be the minimum of the function and the root of the function's
derivative.


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2e923443a18297c4a31b2aac910368a321bbf9d3
1343305506
Gilles Sadowski
MATH-832
Unit test (showing that the report is invalid).


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1343220014
Gilles Sadowski
Added "final" keyword.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1365559 13f79535-47bb-0310-9956-ffa450edef68

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a24ddacfd1a4dc8ba6fff17c86be8550e2464e18
1343076388
Thomas Neidhart
[MATH-831] Use String.length check instead of isEmpty due to jdk1.5 compatibility.

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661f46beaae1e7088dcbbf1a3d369268030b96fd
1343074807
Thomas Neidhart
Use non-deprecated ctor.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1364784 13f79535-47bb-0310-9956-ffa450edef68

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f54a697aeb6cddd7fc3c5d8c59f0655b4de57b3a
1343074792
Thomas Neidhart
[MATH-235] Added a hasComplexEigenvalues method.

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2a346e551dc191a06248c78553961f2b4b7d1865
1343074049
Thomas Neidhart
Added MATH-831 to changes.xml.

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2a346e551dc191a06248c78553961f2b4b7d1865
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117245def67e3e6feb3c7bdab2a5240163ea61b1
1343073419
Thomas Neidhart
[MATH-831] Change default format, add static fields in MatrixUtils, replace toString() implementation in AbstractRealMatrix with the default RealMatrixFormat.

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b47a3e5ebc7bfdacd98be0208c5546073a2401d6
1343056059
Gilles Sadowski
Fixed typo (svn tag).


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b47a3e5ebc7bfdacd98be0208c5546073a2401d6
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567f081a13c551dc4ae9c9c61389ece993b566d0
1342997115
Gilles Sadowski
Fixed CheckStyle warnings.


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567f081a13c551dc4ae9c9c61389ece993b566d0
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94c89491f24359015c3f0d26a4e7189dd2dea25a
1342996201
Gilles Sadowski
MATH-827
Deprecated "LegendreGaussIntegrator" (superseded by
"IterativeLegendreGaussIntegrator").


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eb0e423884d22b4a9cfd0daf00349ccdb1552178
1342994180
Gilles Sadowski
MATH-827
New "IterativeLegendreGaussIntegrator" class that performs the same algorithm
as the current "LegendreGaussIntegrator" but uses the recently added Gauss  
integration framework (in package "o.a.c.m.analysis.integration.gauss") for
the underlying integration computations.


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eb0e423884d22b4a9cfd0daf00349ccdb1552178
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ae54fc7c671a3bb2bef14234993703a8c116e07c
1342987272
Thomas Neidhart
Fix generics warnings in GaussIntegratorFactory.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1364420 13f79535-47bb-0310-9956-ffa450edef68

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258de9d9347c246f77c9e292657d42c3a374ef74
1342986833
Thomas Neidhart
Bit of code cleanup in MullerUpdatingRegression.

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0b0f1113f02f8ac9a54f0680347e2e5bed425fbe
1342985916
Thomas Neidhart
[MATH-831] Add a RealMatrixFormat class to (de-)serialize a RealMatrix from its string representation.

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0b0f1113f02f8ac9a54f0680347e2e5bed425fbe
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e5d4dacfa0323b123cb87d3aa4558164ee3129a0
1342981632
Thomas Neidhart
Fix id tags and svn:keywords for optimization package.

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973397343ca0fc01a84eae55569aaaab48f0cc27
1342981317
Thomas Neidhart
Fix id tags for TransformType.

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973397343ca0fc01a84eae55569aaaab48f0cc27
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5b9f1343f55bf28c9bebe2630e3a8be556b707e6
1342981262
Thomas Neidhart
Fix id tags and svn:keywords for stat package.

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88ecdbe4ba7645254ad4e0e5d90d9f01d0b82839
1342981166
Thomas Neidhart
Fix id tags and svn:keywords for util package.

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88ecdbe4ba7645254ad4e0e5d90d9f01d0b82839
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72f9dc8e38a8b16ccccd86b254d44eeccb783336
1342981003
Thomas Neidhart
Fixed id tags and svn:keywords for exception.util package.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1364388 13f79535-47bb-0310-9956-ffa450edef68

72f9dc8e38a8b16ccccd86b254d44eeccb783336
bd88f845cba1ec04c66d83c2f6e925b705b26b22
1342980851
Thomas Neidhart
Fix id tags and svn:keywords in analysis package.

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54add4842b5c7058ad9a55ba77ff250f92d9272f
1342978958
Thomas Neidhart
Fixed id tag, added svn:keywords for exception package.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1364378 13f79535-47bb-0310-9956-ffa450edef68

54add4842b5c7058ad9a55ba77ff250f92d9272f
87936d2bd29b553d6f84dde34eae0225fd7103cd
1342978756
Thomas Neidhart
Fixed id tag, added svn:keywords for analysis.function package.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1364377 13f79535-47bb-0310-9956-ffa450edef68

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9f38d7cffa3c4b010a41c3bb3946846dbadeb21a
1342978185
Thomas Neidhart
Added missing keywords setting.

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9f38d7cffa3c4b010a41c3bb3946846dbadeb21a
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07818286c5982e26ed81125fbb1492456add545b
1342978022
Thomas Neidhart
Removed unneeded import, fix id tag in header.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1364374 13f79535-47bb-0310-9956-ffa450edef68

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619a96d376e62041e7f25e7efbc10742b4aa628f
1342977860
Thomas Neidhart
Removed unnecessary return statements, reported by pmd.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1364372 13f79535-47bb-0310-9956-ffa450edef68

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085bc9f4a64ecafc009b6bb474fe4dad2520a96f
1342977792
Thomas Neidhart
Combined two subsequent if statements, reported by pmd.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1364371 13f79535-47bb-0310-9956-ffa450edef68

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55049ef0851299f6ddf417924b732f47dd88128d
1342977725
Thomas Neidhart
Removed unnecessary return statements, reported by pmd.

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d4b1998616d52e110895adb0d071bfd7124b09f8
1342977562
Thomas Neidhart
Removed unnecessary return statements, reported by pmd.

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d4b1998616d52e110895adb0d071bfd7124b09f8
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c93d8d4ff4624834bfa500ad3070e0a6cd2afc86
1342971045
Thomas Neidhart
Checkstyle fix wrt unused imports.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1364329 13f79535-47bb-0310-9956-ffa450edef68

c93d8d4ff4624834bfa500ad3070e0a6cd2afc86
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764e70c37b260e7ce3d69d27fb6b403606bbf37f
1342970951
Thomas Neidhart
Use non-deprecated ctor.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1364328 13f79535-47bb-0310-9956-ffa450edef68

764e70c37b260e7ce3d69d27fb6b403606bbf37f
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c04c01c5c8b49b7ece6d096ff45896a6f3306f1b
1342969252
Thomas Neidhart
[MATH-578] Improve performance of quantile evaluation in Percentile for special cases.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1364318 13f79535-47bb-0310-9956-ffa450edef68

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04ced3cdc78d31f415c7691ea13a5daa9ec5d6ec
1342918661
Gilles Sadowski
MATH-797
Attribution.


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04ced3cdc78d31f415c7691ea13a5daa9ec5d6ec
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5462eca5e4bbdecbfdb73999f3c93a700e57f797
1342894466
Gilles Sadowski
MATH-797
Modified test to be Java5 compatible.
Corrected a bug in the (dummy) rule computation.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1364137 13f79535-47bb-0310-9956-ffa450edef68

5462eca5e4bbdecbfdb73999f3c93a700e57f797
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463e936fe247ae397b75758a87d682d8babc7e12
1342874824
Gilles Sadowski
MATH-797
Added unit test.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1364075 13f79535-47bb-0310-9956-ffa450edef68

463e936fe247ae397b75758a87d682d8babc7e12
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3baf9e9296581ff4dd2083a3716841741e779c04
1342833004
Gilles Sadowski
MATH-829
Removed unnecessary "throws Exception" clause from method signature.


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c65ed0ce1eb20a8ee2e186a7e4fa0209a2785515
1342831369
Gilles Sadowski
MATH-829
Removed unnecessary (and uninformative) "throws Exception" clauses in
method signature.


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5519ebe31ef6510ef95834968fda1162be8e9eec
1342829298
Gilles Sadowski
MATH-797
Performance: synchronization should ensure that the computation of each
rule will be performed once, even if the factory is accessed from multiple
threads.


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1342819641
Gilles Sadowski
Added license header.


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1342804350
Gilles Sadowski
MATH-797
Performance improvement: Caching the converted rules that were already
retrieved, so that the conversion from "Number" occurs only once per rule.


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1342746728
Gilles Sadowski
MATH-764
MATH-823
Recovered backward-compatible functionality (removed in r1363604) for
deprecated field.


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1342745025
Gilles Sadowski
MATH-764
MATH-823
Allow explicit setting of RNG (parameter of the constructor).
Removed dependency on "RandomDataImpl" for the "sample" method.


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2b1a5f47495a905b9c95eb0c6d71b7441f608620
1342741755
Gilles Sadowski
Typo in svn tag.


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2b1a5f47495a905b9c95eb0c6d71b7441f608620
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1342738967
Gilles Sadowski
MATH-829
Removed "throws" clause from method signature.


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1342735336
Thomas Neidhart
Fixed checkstyle warning.

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a3593b1b44cd4a7f6d3fffaf2d1a0f9b5d8f3a84
1342699265
Gilles Sadowski
Fixed typo in class name.


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a3593b1b44cd4a7f6d3fffaf2d1a0f9b5d8f3a84
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1342645731
Thomas Neidhart
Add math-235 to changes.xml.

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1342644583
Thomas Neidhart
[MATH-235] Added random data test for eigen decomposition, improved error handling.

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1342560623
Thomas Neidhart
Relax epsilon criteria for eigen decomposition.

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1342559434
Thomas Neidhart
Added more random tests for SchurTransformer.

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1342559228
Thomas Neidhart
Added more random data tests for HessenbergTransformer.

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1342445892
Gilles Sadowski
Code cleanup.


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1342432626
Gilles Sadowski
MATH-825
Deprecated method that should not be part of the public API.


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1342395758
Gilles Sadowski
Fixed CheckStyle warnings.


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1342386393
Gilles Sadowski
Moved variable declarations closer to their point of use.


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1342385413
Gilles Sadowski
MATH-768
Provided access to methods for finding complex roots of a polynomial in
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Added utility for converting an array of doubles to an array of "Complex"
objects.


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:100644 100644 af20d5585a140a325f52f2237d824a8b8b28adbc 4c71ba472913786fa4705828ecac832a65cd51fc M	src/test/java/org/apache/commons/math3/complex/ComplexUtilsTest.java

f1a0493cca9048303953a7fd47b53ef57b6d33d6
1342300776
Thomas Neidhart
[MATH-822] Added new constructors in EigenDecomposition. Thanks to Jared Becksfort for the report.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1361587 13f79535-47bb-0310-9956-ffa450edef68

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:100644 100644 609fa3314f2afdf1cd65008758ea4764d3329f44 a3c071f598a7efba6bc5e40387c9eecbc688759b M	src/changes/changes.xml
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db0926e7876cd7d9835654ea43a8b0517f38c6fc
1342179460
Sebastien Brisard
Added @Ignore tags with explanatory messages for unit tests ignored until MATH-821 is solved.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1361170 13f79535-47bb-0310-9956-ffa450edef68

db0926e7876cd7d9835654ea43a8b0517f38c6fc
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b22e2b565ee266bc28092596a490fb8e756b3aa2
1342178442
Gilles Sadowski
Two failing tests temporarily disabled until MATH-821 is fixed.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1361164 13f79535-47bb-0310-9956-ffa450edef68

b22e2b565ee266bc28092596a490fb8e756b3aa2
:100644 100644 1e3da4f817a7eb2b38ee26c465747a63ca5dbeba 6232f8117ced1b9eb13faee40f8153a8b98a6a49 M	src/test/java/org/apache/commons/math3/linear/SparseRealVectorTest.java

7cac17f918f3e895e5091724967c7e7c3547916a
1342104198
Gilles Sadowski
MATH-797
Initial version for Gauss-Legendre quadrature rules: the integration is
performed on the whole interval using a single rule. [Whereas the approach
used in class "analysis.integration.LegendreGaussIntegrator" is to divide
iteratively into sub-intervals (over which the integration rule is used)
until some covergence criterion is met.]
Adapted from an original code donated by Sébastien Brisard.
In the current implementation, the Gauss-Legendre rules are computed in
double precision in "LegendreRuleFactory" and high precision (using
"java.math.BigDecimal") in "LegendreHighPrecisionRuleFactory". However,
the "GaussIntegrator" class performs the integration using "double"s
whatever the precision of the rule.
The framework of "BaseRuleFactory" enables the addition of other quadrature
schemes (by overriding the "computeRule" method). [Sébastien's code already
provides Gauss-Chebyshev and Gauss-Hermite schemes (in double precision).]


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1360706 13f79535-47bb-0310-9956-ffa450edef68

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dc3a7941d539e9e397b3dd39d5f6dc24b2b9d5fa
1342099905
Sebastien Brisard
MATH-812: fixed a bug in RealVector.outerProduct(RealVector). Now loops through *all* entries of the vectors.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1360668 13f79535-47bb-0310-9956-ffa450edef68

dc3a7941d539e9e397b3dd39d5f6dc24b2b9d5fa
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f8c8f362262695340230d532f73dcd7d96027bcd
1342099028
Sebastien Brisard
MATH-812: fixed a bug in RealVector.dotProduct(RealVector). Now loops through *all* entries of the vectors.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1360662 13f79535-47bb-0310-9956-ffa450edef68

f8c8f362262695340230d532f73dcd7d96027bcd
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9d7956155b6b19415e6cb08e06c3f0fae8cb67ff
1341656793
Gilles Sadowski
Typo in userguide.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1358535 13f79535-47bb-0310-9956-ffa450edef68

9d7956155b6b19415e6cb08e06c3f0fae8cb67ff
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e383eb077befb16b4ba0617dab427ff3b73128c5
1341638264
Sebastien Brisard
MATH-795: made some error messages more explicit.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1358502 13f79535-47bb-0310-9956-ffa450edef68

e383eb077befb16b4ba0617dab427ff3b73128c5
:100644 100644 3f9189f4517912a84925067bb684c4cdea65dd0c 8cf52e3bd78d479acc31f07bda3405be4f4c42ea M	src/test/java/org/apache/commons/math3/linear/RealVectorAbstractTest.java

3771443378c6221f1a79b9ceac9efb20c659e4bd
1341603060
Sebastien Brisard
MATH-795: final clean-up of ArrayRealVectorTest.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1358366 13f79535-47bb-0310-9956-ffa450edef68

3771443378c6221f1a79b9ceac9efb20c659e4bd
:100644 100644 ac594e2d37db76109449ae6d98d89ca1b3755b17 765fda29b4d375f126844662d8324410e97ffaf1 M	src/test/java/org/apache/commons/math3/linear/ArrayRealVectorTest.java

9d5dd23434166f1392233b3f7550492faedd425d
1341601972
Sebastien Brisard
In RealVectorAbstractTest.RealVectorTestImpl, removed
  - RealVector mapToSelf(UnivariateFunction),
  - double[] toArray(),
which override default implementations.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1358359 13f79535-47bb-0310-9956-ffa450edef68

9d5dd23434166f1392233b3f7550492faedd425d
:100644 100644 6058b4d2987b2a8a0aae4270b19abc9ec611bf90 3f9189f4517912a84925067bb684c4cdea65dd0c M	src/test/java/org/apache/commons/math3/linear/RealVectorAbstractTest.java

5d06a22568e65b6f30167ada64a89ea27261bab5
1341601627
Sebastien Brisard
MATH-795: in RealVectorAbstractTest, removed unused class variables.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1358355 13f79535-47bb-0310-9956-ffa450edef68

5d06a22568e65b6f30167ada64a89ea27261bab5
:100644 100644 658615eaa08c203695c43e6037186abf91c427f7 6058b4d2987b2a8a0aae4270b19abc9ec611bf90 M	src/test/java/org/apache/commons/math3/linear/RealVectorAbstractTest.java

7a70bf6cfeda6ba676df08eb383601ea10f17335
1341601558
Sebastien Brisard
MATH-795: in RealVectorAbstractTest, removed unused method assertClose.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1358353 13f79535-47bb-0310-9956-ffa450edef68

7a70bf6cfeda6ba676df08eb383601ea10f17335
:100644 100644 bd3587aeb9ec4903b6106679c4cb6f806769c206 658615eaa08c203695c43e6037186abf91c427f7 M	src/test/java/org/apache/commons/math3/linear/RealVectorAbstractTest.java

baad7bdc1c3f64eb36643e5fe01562711b00d0e7
1341601336
Sebastien Brisard
MATH-795: in RealVectorTest, removed unecessary re-implementation of testAddToEntry.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1358349 13f79535-47bb-0310-9956-ffa450edef68

baad7bdc1c3f64eb36643e5fe01562711b00d0e7
:100644 100644 94ad035f4580ca238b95b42a2a3c4432d4643c90 ff0a4ad08dd33201de0679f3720221934f1f57e1 M	src/test/java/org/apache/commons/math3/linear/RealVectorTest.java

d2110ad776f4a7e77c0050fc5b52531c9fa18aa8
1341601152
Sebastien Brisard
MATH-795: in RealVectorTest, removed
  - testCombineToSelfPrecondition()
  - testCombineToSelf()
which are redundant with other tests already implemented in RealVectorAbstractTest.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1358346 13f79535-47bb-0310-9956-ffa450edef68

d2110ad776f4a7e77c0050fc5b52531c9fa18aa8
:100644 100644 5610a4f36f773fe03bd19dda46b46586d8cb5706 94ad035f4580ca238b95b42a2a3c4432d4643c90 M	src/test/java/org/apache/commons/math3/linear/RealVectorTest.java

3385d1f44f2c41f088db580459f067f8bdebe2b8
1341600949
Sebastien Brisard
In RealVectorTest, removed testClone(), which does not test anything.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1358344 13f79535-47bb-0310-9956-ffa450edef68

3385d1f44f2c41f088db580459f067f8bdebe2b8
:100644 100644 a8a0412aa433bf28c52c5786553bb12229807b6b 5610a4f36f773fe03bd19dda46b46586d8cb5706 M	src/test/java/org/apache/commons/math3/linear/RealVectorTest.java

234d22f940364e2f8e653f9b4060ff3f6009d014
1341600869
Sebastien Brisard
MATH-795: in RealVectorTest, cleaned-up testSparseIterator().


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1358343 13f79535-47bb-0310-9956-ffa450edef68

234d22f940364e2f8e653f9b4060ff3f6009d014
:100644 100644 d52df4e6dc94b75a62cd1eb6b0d554fcdd11c471 a8a0412aa433bf28c52c5786553bb12229807b6b M	src/test/java/org/apache/commons/math3/linear/RealVectorTest.java

58438af37b713ec5cbb025f95c226afee6ed4bb0
1341599523
Sebastien Brisard
MATH-795: default implementation of RealVector RealVectorAbstractTest.createAlien(double[]).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1358339 13f79535-47bb-0310-9956-ffa450edef68

58438af37b713ec5cbb025f95c226afee6ed4bb0
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:100644 100644 84beb0fb15166ad468b5b3ce04574ac0e73a3eff d52df4e6dc94b75a62cd1eb6b0d554fcdd11c471 M	src/test/java/org/apache/commons/math3/linear/RealVectorTest.java
:100644 100644 08e2f306590f6f5486315ca9e39db893f5c10b3a 1e3da4f817a7eb2b38ee26c465747a63ca5dbeba M	src/test/java/org/apache/commons/math3/linear/SparseRealVectorTest.java

0b0d546e7ccd9822a929a08daeb1f3261e380d0d
1341599351
Sebastien Brisard
MATH-795: SparseRealVectorTest now uses RealVectorAbstractTest.RealVectorTestImpl instead of SparseRealVectorTest.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1358338 13f79535-47bb-0310-9956-ffa450edef68

0b0d546e7ccd9822a929a08daeb1f3261e380d0d
:100644 100644 7a9759ad8c48fcc4f2119266bb6b61f414f6ad23 08e2f306590f6f5486315ca9e39db893f5c10b3a M	src/test/java/org/apache/commons/math3/linear/SparseRealVectorTest.java

1a7b59636210bfe45ec61df8f0e1ae5376122066
1341599090
Sebastien Brisard
MATH-795: moved minimal implementation of RealVector, ArrayRealVectorTest.RealVectorTestImpl to RealVectorAbstractTest.RealVectorTestImpl.
This minimal implementation is now used by RealVectorTest and ArrayRealVectorTest.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1358334 13f79535-47bb-0310-9956-ffa450edef68

1a7b59636210bfe45ec61df8f0e1ae5376122066
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:100644 100644 695f53f10bf988370210fa3e17b8200098f0bd3a e76f9ec3ecb4cead744a6b7efdfde35471cc581a M	src/test/java/org/apache/commons/math3/linear/RealVectorAbstractTest.java
:100644 100644 9d0d1a92bb3cffa927845d3addd5e11f2d9817f0 84beb0fb15166ad468b5b3ce04574ac0e73a3eff M	src/test/java/org/apache/commons/math3/linear/RealVectorTest.java

74d2d6b4c0bab25b4af727bfccd24ff1c1a82318
1341597582
Sebastien Brisard
MATH-795: in ArrayRealVectorTest, cleaned up the minimal implementation of RealVector, RealVectorTestImpl. This minimal implementation used to be cluttered with unnecessary method implementations, which should have been removed when the interface RealVector was changed into an abstract class.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1358319 13f79535-47bb-0310-9956-ffa450edef68

74d2d6b4c0bab25b4af727bfccd24ff1c1a82318
:100644 100644 5e06fa17323329c00e15ac4a366c3ce845ea32eb 46f457a32f75cf0d45491973d9884845b919e0e1 M	src/test/java/org/apache/commons/math3/linear/ArrayRealVectorTest.java

447f6096c75e82d65ffa8189863e1e52341ce346
1341555783
Sebastien Brisard
MATH-795: cleanup of RealVectorAbstractTest.
Removed unused class variables and imports.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1358049 13f79535-47bb-0310-9956-ffa450edef68

447f6096c75e82d65ffa8189863e1e52341ce346
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:100644 100644 2e8c45462b62c51f223d8d1e2ab37c4e543305ac 695f53f10bf988370210fa3e17b8200098f0bd3a M	src/test/java/org/apache/commons/math3/linear/RealVectorAbstractTest.java
:100644 100644 b99b50f6a949735032a151e003e621eee5e49b8b 7a9759ad8c48fcc4f2119266bb6b61f414f6ad23 M	src/test/java/org/apache/commons/math3/linear/SparseRealVectorTest.java

3e968bd8335ca1568ba696f423ce9228c677ef84
1341553622
Sebastien Brisard
MATH-795:
  - Corrected some build failures caused by changes in r1358046.
  - Moved javadoc of boolean ArrayRealVector.equals(Object) to RealVector.
  - In RealVector, default implementations of equals(Object) and hashCode() throw UnsupportedOperationException, in order to force implementation in subclasses.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1358048 13f79535-47bb-0310-9956-ffa450edef68

3e968bd8335ca1568ba696f423ce9228c677ef84
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:100644 100644 296eab2aef58d80833d915ae79e04af00e6b3bfc 5dc8ddfa69703a27491a3137a4617352c4bf1d73 M	src/main/java/org/apache/commons/math3/linear/RealVector.java
:100644 100644 c30ab162fdb9abd3f849ab7483906334e375d088 12e2a8cd14091566cfc0f977390daa348900338b M	src/test/java/org/apache/commons/math3/linear/ArrayRealVectorTest.java
:100644 100644 cb2ef5cef4cd5d1b60f550653d144f3d71105c14 9d0d1a92bb3cffa927845d3addd5e11f2d9817f0 M	src/test/java/org/apache/commons/math3/linear/RealVectorTest.java

9ba65a4f37acfbe11b648de96cf218265f07bcdb
1341552395
Sebastien Brisard
MATH-795: removed redundant unit tests.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1358046 13f79535-47bb-0310-9956-ffa450edef68

9ba65a4f37acfbe11b648de96cf218265f07bcdb
:100644 100644 d52b995a67014742008976f4cbafdad58879114d 2e8c45462b62c51f223d8d1e2ab37c4e543305ac M	src/test/java/org/apache/commons/math3/linear/RealVectorAbstractTest.java

6352c3d688956454ed8a76cb1fb54d44f79f7f71
1341551919
Sebastien Brisard
MATH-795:
  - Added default implementation to RealVector RealVector.projection(RealVector)
  - Removed implementation in concrete classes (to avoid code duplication).
  - Created unit tests accordingly.
 


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1358044 13f79535-47bb-0310-9956-ffa450edef68

6352c3d688956454ed8a76cb1fb54d44f79f7f71
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:100644 100644 fb3ccc950ddc0d71ca4824482d79a7e2eb7dc471 cb2ef5cef4cd5d1b60f550653d144f3d71105c14 M	src/test/java/org/apache/commons/math3/linear/RealVectorTest.java
:100644 100644 23171c30723387ef965032227f7e31fd216d13b3 b99b50f6a949735032a151e003e621eee5e49b8b M	src/test/java/org/apache/commons/math3/linear/SparseRealVectorTest.java

8a8434921c835f5fd8c24d17f5843adbb48d2945
1341546484
Sebastien Brisard
MATH-795:  refactored unit tests for double RealVector.cosine(RealVector).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1358033 13f79535-47bb-0310-9956-ffa450edef68

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:100644 100644 2eb5a1b235c53108abb42facc377cb3bf5667803 539771eaed41ef8493cbb4bc567542cca28b8a97 M	src/test/java/org/apache/commons/math3/linear/ArrayRealVectorTest.java
:100644 100644 cc8fccb5a3a46e67180237eb8ddbd43dea43810b 9183b1367bac0e9633e7fcfad006652cf21e133a M	src/test/java/org/apache/commons/math3/linear/RealVectorAbstractTest.java
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07b8843782615cfc37f074141432ad4ac7b2a203
1341424802
Gilles Sadowski
MATH-798
Added overridden "fit" method where one can specify the maximum number of
function evaluations.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1357353 13f79535-47bb-0310-9956-ffa450edef68

07b8843782615cfc37f074141432ad4ac7b2a203
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:100644 100644 4f32da6999bf1c02a39677569293ff4841e690ae 2ae9fc5705dff738ab59400598abcf1337ba0380 M	src/main/java/org/apache/commons/math3/optimization/fitting/PolynomialFitter.java
:100644 100644 8f40134e8fe3a6dbc9d8114174be9c8b7ca4f77d c39cd4383508d161def10a639962dc8e07c770b1 M	src/test/java/org/apache/commons/math3/optimization/fitting/CurveFitterTest.java
:100644 100644 cfc84362479a4dbce2f898e81c6214cfd7cc1bef 4976ae92621740c8cbb6d1fe574c3fdaf14679d3 M	src/test/java/org/apache/commons/math3/optimization/fitting/PolynomialFitterTest.java

e4b70069ea2bd312d5f9b03cbabfb6571bb88430
1341356635
Gilles Sadowski
MATH-810
Added new accessors.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1357004 13f79535-47bb-0310-9956-ffa450edef68

e4b70069ea2bd312d5f9b03cbabfb6571bb88430
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af9431318d96ec72cc7d832331a5b936b73d5806
1341294717
Sebastien Brisard
MATH-795: in RealVectorAbstractTest, factored out unit tests for
double dotProduct(RealVector)

As first reported by Bill Barker, these tests fail with the current default implementation (in RealVector) as well as the sparse implementation (in OpenMapRealVector).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1356576 13f79535-47bb-0310-9956-ffa450edef68

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634e6726ab4cf1a986ce78430b5bf903a57528f2
1341207970
Sebastien Brisard
MATH-795: in RealVectorAbstractTest, refactored unit tests of
  - RealVector RealVector.combine(double, double, RealVector),
  - RealVector RealVector.combineToSelf(double, double, RealVector).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1356070 13f79535-47bb-0310-9956-ffa450edef68

634e6726ab4cf1a986ce78430b5bf903a57528f2
:100644 100644 3f1b806fa51ee4795dcb966ae775210bba720c11 54365cd608c62b9304004ff1593de0a651ba588e M	src/test/java/org/apache/commons/math3/linear/RealVectorAbstractTest.java

eb50c98440b0da963d5df4bfd1bf734bc415977f
1340863791
Sebastien Brisard
MATH-795:
In org.apache.commons.math3.linear.RealVectorAbstractTest
  - factored out unit tests of RealVector RealVector.set(double),
  - created unit tests of double[] RealVector.toArray(),
  - factored out unit tests of RealVector RealVector.unitVector(),
  - factored out unit tests of void RealVector.unitize(),
  - created unit tests of Iterator<RealVector.Entry> RealVector.iterator().

In org.apache.commons.math3.linear.ArrayRealVector, removed unnecessary overrides of unitVector() and unitize().

In org.apache.commons.math3.linear.RealVector
  - unitVector() and unitize() now throw an ArithmeticException when the norm is 0 (as specified in the Javadoc),
  - the returned iterator() returns NoSuchElementException as specified in the general contract of iterators.



git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1354822 13f79535-47bb-0310-9956-ffa450edef68

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:100644 100644 377fadb45a2c50fa2f6c87591222049a0ce6cdaf 0774f9b852c54895c8d1aeb21ad77b5e29d69075 M	src/main/java/org/apache/commons/math3/linear/RealVector.java
:100644 100644 a83b30908769f460540610e89245b8d0db25e39a 3f1b806fa51ee4795dcb966ae775210bba720c11 M	src/test/java/org/apache/commons/math3/linear/RealVectorAbstractTest.java
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48a95a925f590c06d9c0491aac3d1f6c2ce2d147
1340776389
Sebastien Brisard
MATH-795: factored out unit test of
RealMatrix RealVector.outerProduct(RealVector)
This test fails with the default implementation provided by the abstract class RealMatrix.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1354330 13f79535-47bb-0310-9956-ffa450edef68

48a95a925f590c06d9c0491aac3d1f6c2ce2d147
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0221dccf153d57cc8fccc7f40f377f2118ff52b8
1340775475
Sebastien Brisard
MATH-795: in RealVectorAbstractTest, created an array of specific entry values to be tested. Generalized its use in some unit tests.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1354329 13f79535-47bb-0310-9956-ffa450edef68

0221dccf153d57cc8fccc7f40f377f2118ff52b8
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5b795783ba8908e26e396b9cd4803af8577f2d68
1340690967
Sebastien Brisard
MATH-795: factored out unit tests for RealVector.map(UnivariateFunction) and RealVector.mapToSelf(UnivariateFunction).

This test fails with OpenMapRealVector. This is a known issue (sign of zero is lost in this class).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1353825 13f79535-47bb-0310-9956-ffa450edef68

5b795783ba8908e26e396b9cd4803af8577f2d68
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:100644 100644 48419dbbe11192d619018edb92ccf01616fa17ad 9962a6f5babaa1e0c9c4caf92ecc8fb8f7386b69 M	src/test/java/org/apache/commons/math3/linear/RealVectorTest.java

c1494f2aeee50d538f0ceafa31863c285f56c2fd
1340689513
Sebastien Brisard
MATH-795: factored out unit tests for RealVector.mapAdd(double), RealVector.mapSubtract(double), RealVector.mapDivide(double), RealVector.mapSubtract(double).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1353824 13f79535-47bb-0310-9956-ffa450edef68

c1494f2aeee50d538f0ceafa31863c285f56c2fd
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a5f16911fcdb6fb511fc02c3ad0b5d4be1724feb
1340636411
Sebastien Brisard
In the constructor of IterationManager, removed the check for null argument (already carried out in the constructor of Incrementor).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1353586 13f79535-47bb-0310-9956-ffa450edef68

a5f16911fcdb6fb511fc02c3ad0b5d4be1724feb
:100644 100644 fd20282a0b4cfc7b42f1c9d10a8796508464d213 8837df41e65d5109c60f0ad316ed924b19693480 M	src/main/java/org/apache/commons/math3/util/IterationManager.java

062332fc6d6888c8f233f6f272ce80a42d04a418
1340621078
Sebastien Brisard
Replaced NullPointerException with NullArgumentException.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1353451 13f79535-47bb-0310-9956-ffa450edef68

062332fc6d6888c8f233f6f272ce80a42d04a418
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d36722af197a172a5b8a20977a86b858ffe6aa15
1340603834
Sebastien Brisard
MATH-795: factored out test of getL1Norm, getL1Distance, getLInfNorm, getLInfDistance.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1353388 13f79535-47bb-0310-9956-ffa450edef68

d36722af197a172a5b8a20977a86b858ffe6aa15
:100644 100644 491f275e4558b304c5704782034a45ac929badd4 41ec343b28453fb54082572754d840105162c138 M	src/test/java/org/apache/commons/math3/linear/RealVectorAbstractTest.java
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d79341085d1e627a90c052abb4df891b4db19f81
1340602929
Sebastien Brisard
MATH-795: factored out unit tests of getDistance and getNorm.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1353387 13f79535-47bb-0310-9956-ffa450edef68

d79341085d1e627a90c052abb4df891b4db19f81
:100644 100644 4631adc707382e0cb063a0b325a4f6fe7834af70 491f275e4558b304c5704782034a45ac929badd4 M	src/test/java/org/apache/commons/math3/linear/RealVectorAbstractTest.java

92fcf5e7a86d4ed62c6886c087e79bb3055cdd17
1340601778
Sebastien Brisard
Reverted changes committed in r1353140. In o.a.c.m3.util.Incrementor, a NullPointerException is now thrown if the call-back function specified at construction is null. o.a.c.m3.util.IterationManager was updated accordingly (used to explicitely use the constructor with null argument).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1353386 13f79535-47bb-0310-9956-ffa450edef68

92fcf5e7a86d4ed62c6886c087e79bb3055cdd17
:100644 100644 972b579286e8b91cb1479d7e2363f1f57b363b83 f3c5227a0f73b484296058fcf9e0b2f55346959d M	src/main/java/org/apache/commons/math3/util/Incrementor.java
:100644 100644 dd10fe04409a169a4ab3b91b41e3b552fcbec99b 7ba99c209aa216d7df206206be76dd29e5dafe0c M	src/main/java/org/apache/commons/math3/util/IterationManager.java

8013e76143d1d1574a553b8b05124d041b372b91
1340464354
Sebastien Brisard
MATH-807: in o.a.c.m3.util.IterationManager, created a new constructor which allows for the specification of a o.a.c.m3.util.Incrementor.MaxCountExceededCallback, to be called when the maximum number of iterations is reached.
Updated the javadoc of iterative linear solvers accordingly.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1353141 13f79535-47bb-0310-9956-ffa450edef68

8013e76143d1d1574a553b8b05124d041b372b91
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:100644 100644 c5e17d3b893f6eb410d51494f2c3dc6b928a0275 4c5a25dd2b2ca149cdd7376b38e3904daab81cf2 M	src/main/java/org/apache/commons/math3/linear/PreconditionedIterativeLinearSolver.java
:100644 100644 4e9f63f49bae8206e77297e694aee74c4fd0e1ec 30aa74e42d18a05fee7572299588ed798eaaee65 M	src/main/java/org/apache/commons/math3/linear/SymmLQ.java
:100644 100644 2c7e6b0acfeef403c21601d895486a1ff79c6242 dd10fe04409a169a4ab3b91b41e3b552fcbec99b M	src/main/java/org/apache/commons/math3/util/IterationManager.java

77fc6fcb191aae07fd8753dc393df88e1b8ac073
1340464154
Sebastien Brisard
In o.a.c.m3.Incrementor, modified constructor to allow for null values of the MaxCountExceededCallback. Null value was previously not checked wich could lead to a NullPointerException much later (at exhaustion of the counter).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1353140 13f79535-47bb-0310-9956-ffa450edef68

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29d5df5e1f75a870a6c5cbc751255531d80c1f0c
1340348788
Sebastien Brisard
MATH-803 : deprecated RealVector.ebeMultiply() and RealVector.ebeDivide(), and
updated unit tests accordingly.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1352782 13f79535-47bb-0310-9956-ffa450edef68

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:100644 100644 b6a0fc859b2e64ac9f498c84dbc68a3b4a42246f 4631adc707382e0cb063a0b325a4f6fe7834af70 M	src/test/java/org/apache/commons/math3/linear/RealVectorAbstractTest.java
:100644 100644 79f9b32e1b335d91b13d107bb24197674db96e79 1ace6f4fbba16402959ee636cdcd5ff06983bf00 M	src/test/java/org/apache/commons/math3/linear/UnmodifiableRealVectorAbstractTest.java

bb5612d4d36bf33644926c5b99732dbe1e7f75ce
1340014420
Luc Maisonobe
Fixed checkstyle warnings.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1351265 13f79535-47bb-0310-9956-ffa450edef68

bb5612d4d36bf33644926c5b99732dbe1e7f75ce
:100644 100644 397014bc704cb58dde47413998f0c178eebd4a1b dc7b066c5a3154e2c6f5f65b7bfcd38a6987df07 M	src/main/java/org/apache/commons/math3/analysis/interpolation/HermiteInterpolator.java
:100644 100644 51ffce25c9a52f5e80c1a41ed719740b7ba7e0e0 f132a3c8215bbec0ac139c3cdaeb81950c107304 M	src/main/java/org/apache/commons/math3/geometry/euclidean/threed/Rotation.java

798d2141ca2534d2ce7f8cef70da53d7533c5ce0
1340013672
Luc Maisonobe
Added Hermite interpolator.

This class implements the Hermite polynomial interpolation method, which
can match function derivatives in addition to function value at sampling
points. The implementation is done for vector-valued functions.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1351257 13f79535-47bb-0310-9956-ffa450edef68

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:000000 100644 0000000000000000000000000000000000000000 397014bc704cb58dde47413998f0c178eebd4a1b A	src/main/java/org/apache/commons/math3/analysis/interpolation/HermiteInterpolator.java
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a428cfc322f85dab5f9ba575fa3712309544558b
1339789756
Thomas Neidhart
[MATH-777] added missing license header and test chromosome.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1350755 13f79535-47bb-0310-9956-ffa450edef68

a428cfc322f85dab5f9ba575fa3712309544558b
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:100644 100644 87ac21d7a76de87500800ef53b85e0f0360f2c27 f290841cbdce233726c2ac63ed50ed0122b6f864 M	src/test/java/org/apache/commons/math3/genetics/NPointCrossoverTest.java
:100644 100644 a7950b24782044ff8807d03c77909609f1fc160e 6b85a79607163f41bf8696da2638cc5fb89f2177 M	src/test/java/org/apache/commons/math3/genetics/UniformCrossoverTest.java

cf4855ea27465616b3662257cfdb68e18c873c77
1339706249
Thomas Neidhart
[MATH-777] Added UniformCrossover policy. Thanks for Reid Hochstedler.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1350391 13f79535-47bb-0310-9956-ffa450edef68

cf4855ea27465616b3662257cfdb68e18c873c77
:000000 100644 0000000000000000000000000000000000000000 f7d4fcad5545cd8552dd71f6ffecc2fba3b1c83c A	src/main/java/org/apache/commons/math3/genetics/UniformCrossover.java
:000000 100644 0000000000000000000000000000000000000000 a7950b24782044ff8807d03c77909609f1fc160e A	src/test/java/org/apache/commons/math3/genetics/UniformCrossoverTest.java

d4d928c858a58bab3134060ace8d3eb18f5dbaf2
1339579856
Gilles Sadowski
MATH-798
Unit test.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1349707 13f79535-47bb-0310-9956-ffa450edef68

d4d928c858a58bab3134060ace8d3eb18f5dbaf2
:100644 100644 69a6bd785a80d6f58679003a564b90d5c03f37ca aa6b0d7610486280bdf5e27d6d2e6ac00f1da18f M	src/test/java/org/apache/commons/math3/optimization/fitting/GaussianFitterTest.java

f53a01e17cc110a11becf334ed4abf7cd53617e7
1339511276
Mikkel Meyer Andersen
MATH-790: Patch applied to fix the second overflow issue.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1349372 13f79535-47bb-0310-9956-ffa450edef68

f53a01e17cc110a11becf334ed4abf7cd53617e7
:100644 100644 a16173723e1f6c28c5e00b6c9c32f2fdd7127b20 88144290709da0076b5db9daf26001ebc73d47ea M	src/main/java/org/apache/commons/math3/stat/inference/MannWhitneyUTest.java

7bbddc2203bed78fafe7739a97df1f53e767341a
1339393936
Sebastien Brisard
MATH-803:
  - modified OpenMapRealVector.ebeMultiply() and ebeDivide() to handle
special cases  0d * NaN, 0d * Infinity, 0d / 0d and 0d / NaN.
  - added implementation of isNaN() and isInfinite() to
SparseRealVectorTest.SparseRealVectorTestImpl in order to allow for testing
of OpenMapRealVector.ebeMultiply() and ebeDivide() with mixed types.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1348721 13f79535-47bb-0310-9956-ffa450edef68

7bbddc2203bed78fafe7739a97df1f53e767341a
:100644 100644 2ca34470c03271f5b7371bd7c3fe6cec657bf667 294ac5726e88e2c7617733b2a5580f8e5c9778a7 M	src/main/java/org/apache/commons/math3/linear/OpenMapRealVector.java
:100644 100644 d5e09f90643a77bbf3eaa9c357b1ce58bb95a4f9 3978fa552ba750d58610c29cbcc2e5f70b319a7f M	src/test/java/org/apache/commons/math3/linear/SparseRealVectorTest.java

350b2b1aa1ed5d7df05a77bf13f701ac1712dbc0
1339341177
Gilles Sadowski
MATH-804
Parameterized "CurveFitter" with the type of the fitting function. Updated subclasses
"PolynomialFitter", "HarmonicFitter", "GaussianFitter" accordingly.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1348613 13f79535-47bb-0310-9956-ffa450edef68

350b2b1aa1ed5d7df05a77bf13f701ac1712dbc0
:100644 100644 6a684d8aa4fd7b0b041b2a33bf04437314c80c48 6919d6dc8f3fdf60e64b38e500abdddd85354583 M	src/changes/changes.xml
:100644 100644 160970fe6665e39fba84c38aaae51843b7dfa739 98135ed5459d365ec8bbfdf737ffb8f084fa1a46 M	src/main/java/org/apache/commons/math3/optimization/fitting/CurveFitter.java
:100644 100644 8c46bcde1bce5ecdcc4397b32c5ddebe04f85dc4 6a5a776b83b0a5f4f43847ec388c6275eff0e604 M	src/main/java/org/apache/commons/math3/optimization/fitting/GaussianFitter.java
:100644 100644 8bdab74aa7b9428ce99af88bf84662e51a81ab38 ebb36d3102afd36ec9638972e1b42316fb13307f M	src/main/java/org/apache/commons/math3/optimization/fitting/HarmonicFitter.java
:100644 100644 20b33961981599650054b18ae5a20a448618f518 4f32da6999bf1c02a39677569293ff4841e690ae M	src/main/java/org/apache/commons/math3/optimization/fitting/PolynomialFitter.java
:100644 100644 e02160a6120329572dbaaaaa756dec7f0f27f937 cfc84362479a4dbce2f898e81c6214cfd7cc1bef M	src/test/java/org/apache/commons/math3/optimization/fitting/PolynomialFitterTest.java

f25cf01de7b1a63baaa60bed02c7fc3a88b8750f
1339268384
Sebastien Brisard
MATH-795
  - In RealVectorTest.TestVectorImpl, removed add(RealVector) and
subtract(RealVector), as they prevented testing of default implementations
(provided in the RealVector abstract class).
  - In RealVectorAbstractTest, extracted unit tests for
    + RealVector.add(RealVector),
    + RealVector.subtract(RealVector),
    + RealVector.ebeMultiply(RealVector),
    + RealVector.ebeDivide(RealVector).

These tests fail with OpenMapRealVector. This is identified as a bug (see
MATH-803).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1348485 13f79535-47bb-0310-9956-ffa450edef68

f25cf01de7b1a63baaa60bed02c7fc3a88b8750f
:100644 100644 539e242c22d76e9bdde920863c066364fba0cb0f b6a0fc859b2e64ac9f498c84dbc68a3b4a42246f M	src/test/java/org/apache/commons/math3/linear/RealVectorAbstractTest.java
:100644 100644 8c9a4630f39a2d12aaf58c05072e74a83882bb69 b46f47d0041e872ff018e771bf9fcec90409d6b3 M	src/test/java/org/apache/commons/math3/linear/RealVectorTest.java

64cca1d9354664286d602d7e16b2f088e31ba45e
1339257605
Sebastien Brisard
MATH-795: in RealVector.add(RealVector) and RealVector.subtract(RealVector)
(default implementation), exceptional cases were not handled properly.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1348438 13f79535-47bb-0310-9956-ffa450edef68

64cca1d9354664286d602d7e16b2f088e31ba45e
:100644 100644 1ca31ccd270af478c140b32bcf8c946ade2ab2f7 6e89a3aee80c139b1b5a389ca04cb967e29d30aa M	src/main/java/org/apache/commons/math3/linear/RealVector.java

076a3c09aa3514d7a4681a9b5d75c7b2ab9fe7b8
1339247498
Sebastien Brisard
MATH-802.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1348396 13f79535-47bb-0310-9956-ffa450edef68

076a3c09aa3514d7a4681a9b5d75c7b2ab9fe7b8
:100644 100644 263c489690526c6d5c2bcc499b1e10d9c9869eaa 1ca31ccd270af478c140b32bcf8c946ade2ab2f7 M	src/main/java/org/apache/commons/math3/linear/RealVector.java

39f47ff0e9880ad47f7f5f7b5933e04b1d17c2cb
1339186690
Sebastien Brisard
MATH-795: in RealVectorAbstractTest, extracted testIsInfinite() from
testPredicates().


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1348228 13f79535-47bb-0310-9956-ffa450edef68

39f47ff0e9880ad47f7f5f7b5933e04b1d17c2cb
:100644 100644 403d66b767c3b482577e00fec2101553c5424b26 539e242c22d76e9bdde920863c066364fba0cb0f M	src/test/java/org/apache/commons/math3/linear/RealVectorAbstractTest.java
:100644 100644 462524309dd12b86eb059b97347a58a0d607d30f 8c9a4630f39a2d12aaf58c05072e74a83882bb69 M	src/test/java/org/apache/commons/math3/linear/RealVectorTest.java

83af9ce9bf1b9919cf8bea8bd528967a2f80c16b
1339186249
Sebastien Brisard
MATH-795: in RealVectorAbstractTest, extracted testIsNaN() from
testPredicates().


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1348225 13f79535-47bb-0310-9956-ffa450edef68

83af9ce9bf1b9919cf8bea8bd528967a2f80c16b
:100644 100644 e90a22dc617f41def7cdc50c21f39c04ac44e461 403d66b767c3b482577e00fec2101553c5424b26 M	src/test/java/org/apache/commons/math3/linear/RealVectorAbstractTest.java
:100644 100644 1690569abad8250b688c255c6a9b8cf0ee13a6bc 462524309dd12b86eb059b97347a58a0d607d30f M	src/test/java/org/apache/commons/math3/linear/RealVectorTest.java

2ea21e3b750885a8bde2ebc229ffda3151fafdfc
1339185402
Sebastien Brisard
MATH-795: in RealVectorAbstractTest, added unit tests for
RealVector.setSubVector(int, RealVector).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1348211 13f79535-47bb-0310-9956-ffa450edef68

2ea21e3b750885a8bde2ebc229ffda3151fafdfc
:100644 100644 86a3746ce1ec8c1bda258c56ff62156366f5c3bb e90a22dc617f41def7cdc50c21f39c04ac44e461 M	src/test/java/org/apache/commons/math3/linear/RealVectorAbstractTest.java
:100644 100644 b926fd6e1d4f7779b78093e8245e81367e53e8f0 1690569abad8250b688c255c6a9b8cf0ee13a6bc M	src/test/java/org/apache/commons/math3/linear/RealVectorTest.java

a25e7f7abe7f6b3f4147febee4a917ce92241aab
1339153451
Mikkel Meyer Andersen
MATH-790: Patch applied to fix the overflow issue.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1348024 13f79535-47bb-0310-9956-ffa450edef68

a25e7f7abe7f6b3f4147febee4a917ce92241aab
:100644 100644 a4acf2f634fb763ea23087506393d36bbd8b8187 a16173723e1f6c28c5e00b6c9c32f2fdd7127b20 M	src/main/java/org/apache/commons/math3/stat/inference/MannWhitneyUTest.java
:100644 100644 80329220549eb7a357bef75fdd91dfeac6b289fe 025520867993e9d3c57a0ecd92a216b5e0f8014c M	src/test/java/org/apache/commons/math3/stat/inference/MannWhitneyUTestTest.java

631c5bcbb2d8d46eed1091031310ed24fcd866ed
1339152479
Mikkel Meyer Andersen
MATH-774: Fixed documentation to described the actual sampling algorithms used

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1348020 13f79535-47bb-0310-9956-ffa450edef68

631c5bcbb2d8d46eed1091031310ed24fcd866ed
:100644 100644 633a53c3dc2a0ae31693640226238fb1ecf990fb f7d5c882008be15c7b9ad481420c4e2fab3482e0 M	src/main/java/org/apache/commons/math3/distribution/GammaDistribution.java

59567429283b8f3fed97a3df2b29cbb6d5a8eab0
1339152109
Mikkel Meyer Andersen
MATH-774: Gamma Distribution override inversion sampling with nextGamma-implementation from oacm.random

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1348015 13f79535-47bb-0310-9956-ffa450edef68

59567429283b8f3fed97a3df2b29cbb6d5a8eab0
:100644 100644 3684d4e8a323d368830de72fe43304a096bc7aaa 633a53c3dc2a0ae31693640226238fb1ecf990fb M	src/main/java/org/apache/commons/math3/distribution/GammaDistribution.java

2464bb227c15c88586c70b2ce4513038ae6ebb70
1339134611
Sebastien Brisard
MATH-795: extracted
  - testSubVectorInvalidIndex1(),
  - testSubVectorInvalidIndex2(),
  - testSubVectorInvalidIndex3(),
  - testSubVectorInvalidIndex4()
from RealVectorAbstractTest.testDataInOut(). This test revealed that
positivity of the number of elements was not checked for in
RealVector.getSubVector(int, int).

This is corrected, and a NotPositiveException is now thrown (corresponding
error message has been added to LocalizedFormats).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1347883 13f79535-47bb-0310-9956-ffa450edef68

2464bb227c15c88586c70b2ce4513038ae6ebb70
:100644 100644 e0a38a2f4d85c9f4c9c2f5cd76f2f99536df3fe4 db6c5463e2f256ce1d3944dc3ffc4d12f2191fd6 M	src/main/java/org/apache/commons/math3/exception/util/LocalizedFormats.java
:100644 100644 52bc023d30a6cba93a4aa89a9433debdeefce526 fd19bd7b3b5aac3bf1723ce28ae739ff81d1e60c M	src/main/java/org/apache/commons/math3/linear/ArrayRealVector.java
:100644 100644 13ada786cd60f9234f3a67922523e8fba63bd696 2ca34470c03271f5b7371bd7c3fe6cec657bf667 M	src/main/java/org/apache/commons/math3/linear/OpenMapRealVector.java
:100644 100644 58c5f95fb7b02dd95f2e82ec2143bc3d7d648333 263c489690526c6d5c2bcc499b1e10d9c9869eaa M	src/main/java/org/apache/commons/math3/linear/RealVector.java
:100644 100644 f7c4499cad00e6e6617955f821dd30a383b11f8a 5123c2baac33da47207450fd3a64794628b4cf8a M	src/main/resources/assets/org/apache/commons/math3/exception/util/LocalizedFormats_fr.properties
:100644 100644 c88839373d849afc1629ca9e37342483aef50234 22a0a52882e7d9867ab8ebc7dc3945975b2701f9 M	src/test/java/org/apache/commons/math3/exception/util/LocalizedFormatsTest.java
:100644 100644 37fd364accb15b713184802276d14d7c588841f4 86a3746ce1ec8c1bda258c56ff62156366f5c3bb M	src/test/java/org/apache/commons/math3/linear/RealVectorAbstractTest.java
:100644 100644 20a49a274717277d1824353591dfd10b04e94dce b926fd6e1d4f7779b78093e8245e81367e53e8f0 M	src/test/java/org/apache/commons/math3/linear/RealVectorTest.java

9d82a03d394f5db8139ccb7241f7e4ebb2e54f8e
1339125841
Sebastien Brisard
MATH-795: extracted testGetSubVector() from
RealVectorAbstractTest.testDataInOut().


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1347877 13f79535-47bb-0310-9956-ffa450edef68

9d82a03d394f5db8139ccb7241f7e4ebb2e54f8e
:100644 100644 bde31905867e3612f8264ab2dba6781891044109 37fd364accb15b713184802276d14d7c588841f4 M	src/test/java/org/apache/commons/math3/linear/RealVectorAbstractTest.java
:100644 100644 ea3d088f9bd25d204e3c06f22b7b36df1aadb22c 20a49a274717277d1824353591dfd10b04e94dce M	src/test/java/org/apache/commons/math3/linear/RealVectorTest.java

9e9742628847af9a75963274ebebb4102c2d7172
1339089048
Sebastien Brisard
MATH-795: RealVectorTest.testAddToEntryInvalidIndex1() and
RealVectorTest.testAddToEntryInvalidIndex2() revealed a bug in
ArrayRealVector.addToEntry(int, double) (method used to throw wrong type of
exception).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1347717 13f79535-47bb-0310-9956-ffa450edef68

9e9742628847af9a75963274ebebb4102c2d7172
:100644 100644 d038af6cabd6fc2758a4ba64873374f54cbd8b7b 52bc023d30a6cba93a4aa89a9433debdeefce526 M	src/main/java/org/apache/commons/math3/linear/ArrayRealVector.java

a3004534e0148776615bdb056c25c5a8727576c3
1339047944
Sebastien Brisard
MATH-795: splitted tests for
  - RealVector.setEntry(int, double),
  - RealVector.addToEntry(int, double).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1347401 13f79535-47bb-0310-9956-ffa450edef68

a3004534e0148776615bdb056c25c5a8727576c3
:100644 100644 edc023bca162851da3dddee0cfe10789cbd9b271 bde31905867e3612f8264ab2dba6781891044109 M	src/test/java/org/apache/commons/math3/linear/RealVectorAbstractTest.java

f1703ce11728aeb9559076e92a4afd7c661c6751
1339046572
Sebastien Brisard
MATH-795:
  - added in RealVectorAbstractTest tests for RealVector.getEntry()
preconditions,
  - modified exceptions thrown in RealVectorTest.TestVectorImpl accordingly.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1347395 13f79535-47bb-0310-9956-ffa450edef68

f1703ce11728aeb9559076e92a4afd7c661c6751
:100644 100644 30af2e8a030783a129d1fe3676ed76eaa547d8af edc023bca162851da3dddee0cfe10789cbd9b271 M	src/test/java/org/apache/commons/math3/linear/RealVectorAbstractTest.java
:100644 100644 d26e460228fceb61c894f0183839c7bfb3b8f087 ea3d088f9bd25d204e3c06f22b7b36df1aadb22c M	src/test/java/org/apache/commons/math3/linear/RealVectorTest.java

895dc5f70f9ffcb1dc90269f1aec4fe0e4003153
1339045966
Sebastien Brisard
In TestUtils, improved handling of error messages for
  - assertEquals(String, double[], RealVector, double),
  - assertEquals(String, RealVector, RealVector, double).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1347393 13f79535-47bb-0310-9956-ffa450edef68

895dc5f70f9ffcb1dc90269f1aec4fe0e4003153
:100644 100644 549a2c4a9c1682a8142a8f0aa0a184c65c9583ef 6fccf887da147ac4a78579e4e8a61ec63ac7ca27 M	src/test/java/org/apache/commons/math3/TestUtils.java

50c280ab14cd456827709a9e05fb5b616f096551
1339045533
Sebastien Brisard
Utility method for testing for equality of expected double[] with RealVector.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1347392 13f79535-47bb-0310-9956-ffa450edef68

50c280ab14cd456827709a9e05fb5b616f096551
:100644 100644 1aa1534960496a88b275c9e402118b6d2f0c1e75 549a2c4a9c1682a8142a8f0aa0a184c65c9583ef M	src/test/java/org/apache/commons/math3/TestUtils.java

4451a1d802ce3f0cfbe621c0f6df4a5f283edb2b
1339026529
Gilles Sadowski
MATH-800
Updated userguide and added unit test.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1347211 13f79535-47bb-0310-9956-ffa450edef68

4451a1d802ce3f0cfbe621c0f6df4a5f283edb2b
:100644 100644 040780de9af9555ae8fce5c891cbcc45f7f30d10 1020b2678e3915922cce3c2a95373fb889a2b80c M	src/site/xdoc/userguide/optimization.xml
:100644 100644 d7f8f6c699b7f97f9616fd10d79c9e3e8792b7dd e02160a6120329572dbaaaaa756dec7f0f27f937 M	src/test/java/org/apache/commons/math3/optimization/fitting/PolynomialFitterTest.java

53dc23b721f012add52fc44a2d5420c1d7f8ccca
1339022022
Gilles Sadowski
MATH-800
Deprecated "PolynomialFitter" and adapted unit test to use "CurveFitter"
directly.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1347184 13f79535-47bb-0310-9956-ffa450edef68

53dc23b721f012add52fc44a2d5420c1d7f8ccca
:100644 100644 f5fd4451cdc8ac268566fb5b0925bff72240c5a7 20b33961981599650054b18ae5a20a448618f518 M	src/main/java/org/apache/commons/math3/optimization/fitting/PolynomialFitter.java
:100644 100644 97566672db6c7cdb8c665cae11a39c9f38bf1679 d7f8f6c699b7f97f9616fd10d79c9e3e8792b7dd M	src/test/java/org/apache/commons/math3/optimization/fitting/PolynomialFitterTest.java

be4cf2bb62e84dff911d76c8a8059f265b722284
1338961281
Sebastien Brisard
MATH-795: in RealVectorAbstractTest
  - defined class variables data1 and data2 for the creation of test vectors.
Attention has been paid to "special" values, which are interspersed with
"normal" values (see e.g. sparse vectors).
  - created testGetDimension().
  - created testGetEntry().


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1346741 13f79535-47bb-0310-9956-ffa450edef68

be4cf2bb62e84dff911d76c8a8059f265b722284
:100644 100644 fc49afefb072eb127b6619277674bf50da35ed5c 30af2e8a030783a129d1fe3676ed76eaa547d8af M	src/test/java/org/apache/commons/math3/linear/RealVectorAbstractTest.java

46ffc570c1ed01b3ccce8e7710ff9c80cb1e7c07
1338960078
Sebastien Brisard
MATH-795:
  - some methods are not implemented by RealVector, so they should not be
tested: added @Ignore annotations in RealVectorTest.
  - in RealVectorAbstractTest, extracted
    + testAppendVector()
    + testAppendScalar()
from testDataInOut().


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1346740 13f79535-47bb-0310-9956-ffa450edef68

46ffc570c1ed01b3ccce8e7710ff9c80cb1e7c07
:100644 100644 1b6820f22a7897c08602090d3ad2d0d51490bbc3 fc49afefb072eb127b6619277674bf50da35ed5c M	src/test/java/org/apache/commons/math3/linear/RealVectorAbstractTest.java
:100644 100644 a04a4427d8624e157183d483e3387e4295b05611 d26e460228fceb61c894f0183839c7bfb3b8f087 M	src/test/java/org/apache/commons/math3/linear/RealVectorTest.java

dcbfce41594a4c2fee75f2dcb1149260947a44b5
1338954962
Sebastien Brisard
MATH-795: in RealVectorAbstractTest, added method getPreferredEntryValue()
which allows testing vectors with some entries set to a preferred value (e.g. 0
for sparse vectors).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1346729 13f79535-47bb-0310-9956-ffa450edef68

dcbfce41594a4c2fee75f2dcb1149260947a44b5
:100644 100644 b2fe0bc117fce21658a2ba478c8f3b0615c84f7f 1b6820f22a7897c08602090d3ad2d0d51490bbc3 M	src/test/java/org/apache/commons/math3/linear/RealVectorAbstractTest.java

a2e7bb663826ce3b30362bdc5704ff27e1ca6a89
1338953019
Sebastien Brisard
MATH-795: removed unused imports.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1346725 13f79535-47bb-0310-9956-ffa450edef68

a2e7bb663826ce3b30362bdc5704ff27e1ca6a89
:100644 100644 db02f5865b9d318a5b3f8d51951581ad6c3a80a6 097705a1bad4e6ecbdbc4e4382bb138ec445faba M	src/test/java/org/apache/commons/math3/linear/ArrayRealVectorTest.java
:100644 100644 35d19a73a93166731f241eeba9856c5a6bedfda8 a04a4427d8624e157183d483e3387e4295b05611 M	src/test/java/org/apache/commons/math3/linear/RealVectorTest.java
:100644 100644 0579b3c01dd0cc9f1d3d15846ee49d255a259fec d5e09f90643a77bbf3eaa9c357b1ce58bb95a4f9 M	src/test/java/org/apache/commons/math3/linear/SparseRealVectorTest.java

aff023117f79b3e2d2520b0754804a9999231702
1338952758
Sebastien Brisard
MATH-795: factored out
  - testCombineToSelfPreconditionSameType()
  - testCombineToSelfSameType()
  - testCombineToSelfPreconditionMixeType()
  - testCombineToSelfMixedTypes()


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1346723 13f79535-47bb-0310-9956-ffa450edef68

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609ab4f6c90eaee53f486395942896758f5b5c89
1338921989
Sebastien Brisard
MATH-795: factored out
  - testCombinePreconditionSameType()
  - testCombineSameType()
  - testCombinePreconditionMixedType()
  - testCombineMixedTypes()


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1346523 13f79535-47bb-0310-9956-ffa450edef68

609ab4f6c90eaee53f486395942896758f5b5c89
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:100644 100644 b4d3de70950cd17fbae4533e9734c3e9b9cd0d9f 7a7d7629cd0d9e8b5470fa8afc92fd0169581d64 M	src/test/java/org/apache/commons/math3/linear/RealVectorAbstractTest.java
:100644 100644 dd7bba645bc5941f7fdd8ede7399196916ca3008 35d19a73a93166731f241eeba9856c5a6bedfda8 M	src/test/java/org/apache/commons/math3/linear/RealVectorTest.java

57afb23d6de53c4bcda39d2930133c79ad6d212c
1338920762
Luc Maisonobe
Fixed a problem when building rotations from two pairs of vectors.
In very rare cases, due to numerical inaccuracies the computed quaternion
was not normalized (some examples went as high as 1.0e8) and even after
normalization, the quaternion was plain wrong.

JIRA: MATH-801

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57afb23d6de53c4bcda39d2930133c79ad6d212c
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9632f16b94e47fe52428cbc7ebe2ce7b6a06c53b
1338916275
Sebastien Brisard
MATH-795: factored out testCosinePrecondition1(), testCosinePrecondition2() and
testCosinePrecondition3().


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d295a1b06b06b70b9f70e4f797c586db7c58629a
1338916100
Sebastien Brisard
MATH-795: factored out testCosine().


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1338915717
Sebastien Brisard
MATH-795: factored out testMinMax().


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:100644 100644 bd58bcc76c66e640e51ee6aef2b0d04eea72f4c0 9a614bbd8704237062e6b4e18f66b5a9a62bc6a9 M	src/test/java/org/apache/commons/math3/linear/RealVectorAbstractTest.java

7f55447970a00dd2514c5eed4aa35de1eb1cd943
1338875141
Sebastien Brisard
MATH-795: factored out testAddToEntry().


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3fd0dea5786d70c876e1ac1e6af1a5fcad913006
1338874657
Sebastien Brisard
MATH-795
  - Factored out testSerial().
  - In RealVectorTest, the vector returned by create(double[]) should really be
of type RealVectorTest.TestVectorImpl, as the minimal implementation is to be
tested. This causes some tests not to pass, they are skipped for the time
being (overriden from RealVectorAbstractTest, without @Test annotation). When
the tests in RealVectorAbstractTest are split, only the smaller tests which do
not make sense in the present context will be skipped.
  - In RealVectorTest, the constructor of RealVectorTest.TestVectorImpl now
makes a defensive copy of the specified double[] array (see Javadoc of
    + RealVectorAbstractTest.create(double[]),
    + RealVectorAbstractTest.createAlien(double[]).


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3fd0dea5786d70c876e1ac1e6af1a5fcad913006
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:100644 100644 2943207455458640ff48d173c5b826c22b26e811 6d7039af21f374d85722e2a1de843ba6f6d47ae0 M	src/test/java/org/apache/commons/math3/linear/RealVectorAbstractTest.java
:100644 100644 dc98ebbb0967e7b8b44bd8eb70fff4a3fc73a57d a991fe28e1a259d0ba311b54ed7319a92d5b5101 M	src/test/java/org/apache/commons/math3/linear/RealVectorTest.java
:100644 100644 c55cda744e3d4a966547cac1416c879f1cbdcd0c 0579b3c01dd0cc9f1d3d15846ee49d255a259fec M	src/test/java/org/apache/commons/math3/linear/SparseRealVectorTest.java

73893855f69b08544b39f8a76a06570916a1960c
1338873055
Sebastien Brisard
MATH-795: factoring out testPredicates().


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73893855f69b08544b39f8a76a06570916a1960c
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:100644 100644 ad7ea7463fa7dbdff8ba341f4be708d8f76fe3c8 2943207455458640ff48d173c5b826c22b26e811 M	src/test/java/org/apache/commons/math3/linear/RealVectorAbstractTest.java
:100644 100644 0fada6893a1fb15b0c0959a840a613bd1094672b c55cda744e3d4a966547cac1416c879f1cbdcd0c M	src/test/java/org/apache/commons/math3/linear/SparseRealVectorTest.java

f311925c2575d99affacb3893ab6122492773d86
1338788433
Sebastien Brisard
MATH-795: factored out testOuterProduct() and testMisc().


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f311925c2575d99affacb3893ab6122492773d86
:100644 100644 932cf0706bd99ce24aab60eb9da62cf830039334 76482879533d926df9bde7500b40968b88990b0a M	src/test/java/org/apache/commons/math3/linear/ArrayRealVectorTest.java
:100644 100644 4a052e6c187740e69419ff6472f41b8bd6aa8824 ad7ea7463fa7dbdff8ba341f4be708d8f76fe3c8 M	src/test/java/org/apache/commons/math3/linear/RealVectorAbstractTest.java
:100644 100644 df3c0fbcd95443fd2798346803811847612c8b0a 0fada6893a1fb15b0c0959a840a613bd1094672b M	src/test/java/org/apache/commons/math3/linear/SparseRealVectorTest.java

94239f2ee08eeaa659535e19b882e3ff4f09a01b
1338765883
Gilles Sadowski
MATH-799
Deprecated default values for thresholds, and constructors that use
them. Scheduled for removal in CM 4.0.


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:100644 100644 804364ed6c8c3560c86a47748133bf59eb5f1fd6 a80802a569ff58df499c18b74095bf49a70e98a2 M	src/main/java/org/apache/commons/math3/optimization/general/LevenbergMarquardtOptimizer.java
:100644 100644 a0af0bd974301571f119378c3e2a41c786cc9df9 e594b6f616901dea8693aff50269dadd7aadbd2a M	src/main/java/org/apache/commons/math3/optimization/general/NonLinearConjugateGradientOptimizer.java
:100644 100644 18949e0f5fc280c8a54c5303c4f1a4c2003cdf53 7a7a4277d78976a103ae2e2c83b927e298d65dce M	src/main/java/org/apache/commons/math3/optimization/univariate/SimpleUnivariateValueChecker.java
:100644 100644 5c222066f0e0bbf2c04ba2894be2eb5efae727a0 d130f93ed4e16c81ae85a10845da4e61990f4b59 M	src/test/java/org/apache/commons/math3/optimization/direct/SimplexOptimizerMultiDirectionalTest.java
:100644 100644 6125ec80f0f0650896132b0c305f8007f71d6d82 b878998c064d446cc8cab20f1224b528fe3a7730 M	src/test/java/org/apache/commons/math3/optimization/general/AbstractLeastSquaresOptimizerTest.java
:100644 100644 72d6b2060b5023a85e35a6da524cf5e34ee45b5a 5d97554cd706bee13e8cc34b7b539902014509dc M	src/test/java/org/apache/commons/math3/optimization/general/AbstractLeastSquaresOptimizerTestValidation.java

5d236a32d6864dc432546cbc4d09bc1b11521b9d
1338659585
Gilles Sadowski
MATH-798
Test case provided by the reporter, adapted to become a unit test, shows
that the same convergence criterion generates a very similar solution by
both "LevenbergMarquardtOptimizer" and "GaussNewtonOptimizer".



git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1345538 13f79535-47bb-0310-9956-ffa450edef68

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7a589011b7dcf8d90f935a01e83064ed9b33c24d
1338630383
Sebastien Brisard
In LocalizedFormats, removed ALPHA and BETA which are no longer used (MATH-796).


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2cdae2e75334db2bef64b5db8f783de1ee497638
1338615280
Sebastien Brisard
MATH-795: factored out testBasicFunctions().


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b9ee639f2ad4c863ec29324421b4904d350000f2
1338580924
Luc Maisonobe
Replaced Characterization by an internal class in AbstractRegion.

Note that the suppresses class was a package private one and did not
belong to the public API. It was used only when building the boundaries
in the AbstractRegion class. The change simplifies the package and makes
better use of the existing visitor pattern.

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97739c8be4559ef9c22213ef8adc121dfeb4bb0b
1338528707
Sebastien Brisard
MATH-795: factored out testMapFunctions.


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a7a8be5ea5ec9ee72635181436fd046825d5af84
1338508512
Thomas Neidhart
[MATH-644] added unit test.

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09b43a8b8ef8438db50f3dcbcf9571af5433bd4f
1338507496
Thomas Neidhart
[MATH-644] added fix to changes.xml.

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0205f258448edf94193b64eeae38f8601706195e
1338507286
Thomas Neidhart
[MATH-644] cleanup of HypergeometricDistribution and symmetry fix for upperCumulativeProbability, reported by marzieh.

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1338444813
Sebastien Brisard
Added MATH-791 to the list of changes.


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1338443476
Sebastien Brisard
MATH-795: factored out testDataInOut().


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1338443343
Sebastien Brisard
ArrayRealVector.getEntry(int) did not throw the expected when called with an
invalid index.


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1338369778
Luc Maisonobe
Yet another attempt at computing hash for OrederedTuple.

JIRA: MATH-793

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1338355546
Sebastien Brisard
Added missing license.


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1338354808
Sebastien Brisard
Created utility method to assert equality of two instances of RealVector.


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Thomas Neidhart
Removed unnecessary import.

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Thomas Neidhart
Cleanup of OnePointCrossover.

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1338330264
Thomas Neidhart
[MATH-777] added NPointCrossover policy, thanks to Reid Hochstedler.

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1338317994
Luc Maisonobe
Use inline computation for OrderedTuple hash code.

JIRA: MATH-793

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1343920 13f79535-47bb-0310-9956-ffa450edef68

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Luc Maisonobe
Typo.

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1338282877
Luc Maisonobe
Use proper conversion for primitive hashcode.

JIRA: MATH-793

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1343616 13f79535-47bb-0310-9956-ffa450edef68

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Sebastien Brisard
MATH-792: implementation of the visitor pattern for ArrayRealVector (overrides
default implementation in RealVector).


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Sebastien Brisard
Added 'final' keyword.


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Phil Steitz
Added @Retry annotations for tests using secure generators, changed permutation test to use TestUtils Chisquare.  JIRA: MATH-598.

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Phil Steitz
Improved javadoc, eliminated unused (and unlikely to ever be used) method.

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Sebastien Brisard
Reverted changes mistakenly committed in r1343342.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1343346 13f79535-47bb-0310-9956-ffa450edef68

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1a435300e7620e3dec776ced82866b9da8bf76a1
1338229064
Sebastien Brisard
Reverted changes mistakenly committed in r1343342.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1343345 13f79535-47bb-0310-9956-ffa450edef68

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1338228224
Sebastien Brisard
MATH-792:
  - definition of RealVectorChangingVisitor,
  - various methods to visit the entries of a RealVector (entries are possibly modified),
  - default implementation in RealVector abstract class,
  - unit tests in abstract RealVectorAbstractClass.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1343342 13f79535-47bb-0310-9956-ffa450edef68

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1338227617
Sebastien Brisard
Javadoc typo.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1343339 13f79535-47bb-0310-9956-ffa450edef68

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1338219597
Sebastien Brisard
Removed explicit conversion from int to Integer.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1343293 13f79535-47bb-0310-9956-ffa450edef68

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1338207458
Sebastien Brisard
Copy/paste typo (MATH-792).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1343219 13f79535-47bb-0310-9956-ffa450edef68

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Sebastien Brisard
MATH-792: walkInXyzOrder methods are excluded from automatic testing (based on reflexion).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1343217 13f79535-47bb-0310-9956-ffa450edef68

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67ad15647c0def0693eea364c2bd17a2d8067ac6
1338193873
Sebastien Brisard
MATH-792:
  - various methods to visit the entries of a RealVector (entries are unmodified),
  - default implementation in RealVector abstract class,
  - unit tests in abstract RealVectorAbstractClass,
  - all XxxRealVectorTest classes now extend RealVectorAbstractClass.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1343163 13f79535-47bb-0310-9956-ffa450edef68

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Sebastien Brisard
MATH-792: created a visitor for vectors. Entries of the vector being visited are not modified.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1343157 13f79535-47bb-0310-9956-ffa450edef68

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Phil Steitz
Reverted r1343083 commit. Tests using secure random generators can't use fixed seeds. I forgot the default retry was 2, so retry infrastructure was still being used.

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Phil Steitz
Eliminated unused import and retry infrastructure (no longer used). JIRA: Math-598.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1343083 13f79535-47bb-0310-9956-ffa450edef68

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09d7a6a9f0d656567a181ae03beb02017eb7354c
1338144348
Phil Steitz
* Changed testNextHex, textNextSecureHex to use ChiSquareTest via TestUtils method
(These tests were written before either of these existed.)
* Dropped @Retry from testNextHex (no longer needed because randomData is now
initialized with a fixed seed).
* Dropped extraneous checks (must have been cut-paste error).

JIRA: MATH-598




git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1343077 13f79535-47bb-0310-9956-ffa450edef68

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1338144164
Phil Steitz
Adding humble self back.

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df55d3975130aa10aaf9957be7c29ab3d001d045
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Sebastien Brisard
In o.a.c.m3.distribution.GammaDistribution
  - deprecated getAlpha() and created getShape()
  - deprecated getBeta() and created getScale().
See MATH-791.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1342404 13f79535-47bb-0310-9956-ffa450edef68

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125b95c579ccb51c65e48ca78895fab9e660a030
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Sebastien Brisard
In o.a.c.m3.distribution.GammaDistribution,
  - renamed class variable alpha to shape,
  - renamed class variable beta to scale.
Updated javadoc accordingly. See MATH-791.
  

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2d846db3aec18dd081e680be05f6e0faad1cb186
1337630130
Thomas Neidhart
[MATH-718] Use modified Lentz-Thompson algorithm for continued fraction evaluation.

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2d846db3aec18dd081e680be05f6e0faad1cb186
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6a5ef0149e123d9de19910d59e45d0e66bfd665c
1337146600
Sebastien Brisard
Unit tests for GammaDistribution, based on reference data generated with
Maxima. Solves MATH-753.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1339014 13f79535-47bb-0310-9956-ffa450edef68

6a5ef0149e123d9de19910d59e45d0e66bfd665c
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1337139272
Sebastien Brisard
Removed illegal @Override.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1338989 13f79535-47bb-0310-9956-ffa450edef68

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1337139070
Sebastien Brisard
Gamma distribution: reference data for unit tests (see MATH-753).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1338986 13f79535-47bb-0310-9956-ffa450edef68

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8f1afdf5aa9591aa61d27a4e4c82ceee56600198
1337062913
Sebastien Brisard
New implementation of the pdf of Gamma distributions. Solves MATH-753.
Additional unit tests to come.


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8f1afdf5aa9591aa61d27a4e4c82ceee56600198
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e60890df685a9dc2f324cb31c709718e3f43198b
1336992651
Gilles Sadowski
Additional "validation" test in relation to MATH-784. [Not enabled by
default (as its name does not end with the string "Test").]


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f81847d8079753ce45b049813730055188a22efb
1336924316
Luc Maisonobe
Fixed a wrong assumption on BSP tree attributes.

The assumption was that the attribute was always a boolean when boundary
was empty. This assumption was false when emptiness resulted from a
collapsed boundary. Boolean attributes occur only at leaf nodes, so it
is the cut sub-hyperplane that needed to be checked.

JIRA: MATH-780

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8d6478346e45d728656ccac760adc8126b3d225c
1336924290
Luc Maisonobe
Replaced RuntimeException with MathInternalError.

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454235db882cabfb7ca4224bae1bad3a252b1292
1336907805
Luc Maisonobe
Put serialization back for PointValuePair and PointVectorValuePair.

JIRA: MATH-787

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2c4839d7485f82602fcb623791433fa08d147ca1
1336827289
Luc Maisonobe
added missing subversion properties in test resource files

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1336696826
Sebastian Bazley
Shortcut checks for identical objects

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1336696709
Sebastian Bazley
Redundant check for null; null is not an instanceof any Object

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a916046fe415dc40e3979b6eb78c8431fd353a31
1336696347
Sebastian Bazley
Redundant check for null; null is not an instanceof any Object

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1336981 13f79535-47bb-0310-9956-ffa450edef68

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2d7504596a40ac182f09e651971ebfc97f0a09d5
1336692967
Gilles Sadowski
MATH-786
Reverting most of the changes performed in revision 1336458, because the
caching of the hash code could be the source of inconsistent behaviour,
and we are lacking proof that the performance gain is worth it.
The implementation (from r1336458) of the "hashCode" method is retained.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1336958 13f79535-47bb-0310-9956-ffa450edef68

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13da14c03d4c1157e66950ceb06861b7a00fc59b
1336686823
Thomas Neidhart
[MATH-718] fixed integer overflow problem identified as part of numerical stability problems with distributions.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1336915 13f79535-47bb-0310-9956-ffa450edef68

13da14c03d4c1157e66950ceb06861b7a00fc59b
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04b07ea61cace08acdbc390ca52c8c155fa75337
1336626481
Sebastien Brisard
In o.a.c.m3.special.Gamma, exposed the Lanczos approximation (MATH-753).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1336483 13f79535-47bb-0310-9956-ffa450edef68

04b07ea61cace08acdbc390ca52c8c155fa75337
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5aa7ce72fa3214561ac7919cc87dcc602fa97a40
1336608848
Gilles Sadowski
MATH-786
Allow caching of the hash code computation. User is expected to
not change the pair contents if he requested the hash code to be
cached.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1336458 13f79535-47bb-0310-9956-ffa450edef68

5aa7ce72fa3214561ac7919cc87dcc602fa97a40
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522596a1281806dfc0eeab8a1b62d4b042903810
1336565656
Gilles Sadowski
"final", formatting.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1336123 13f79535-47bb-0310-9956-ffa450edef68

522596a1281806dfc0eeab8a1b62d4b042903810
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4efa799071c1833b22fb8d7cc0f5dc71b167d2e2
1336559224
Sebastien Brisard
Reverted changes accidentally committed in r1334315.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1336056 13f79535-47bb-0310-9956-ffa450edef68

4efa799071c1833b22fb8d7cc0f5dc71b167d2e2
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1347c824bbaedf56d28863e92c0c38f41253d823
1336333257
Thomas Neidhart
[MATH-235] add support for non-symmetric matrices in EigenvalueDecomposition.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1334745 13f79535-47bb-0310-9956-ffa450edef68

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c14e02b7877e91f0faf79bc91f34df4e0ebea56f
1336332542
Thomas Neidhart
use different exception to be consistent with EigenDecomposition, use Precision.EPSILON for comparison instead of 2^-52 as in JAMA.

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2a55ee2453fd46c3508e58a4696fd031e332a537
1336322582
Thomas Neidhart
code style adaptations for SchurTransformer

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2a55ee2453fd46c3508e58a4696fd031e332a537
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64ee5650c7ca86aef9e29e76830d1fb4cc4ec736
1336314812
Thomas Neidhart
minor javadoc fixes for HessenbergTransformer.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1334644 13f79535-47bb-0310-9956-ffa450edef68

64ee5650c7ca86aef9e29e76830d1fb4cc4ec736
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b52eeaf76ed3a4a126d196da5c04895b18a1254a
1336314762
Thomas Neidhart
[MATH-235] add SchurTransformer to transform a general real matrix to Schur form.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1334643 13f79535-47bb-0310-9956-ffa450edef68

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0749a48565ccf7895903cfe5d7ab0aebf9a5294c
1336240412
Thomas Neidhart
[MATH-235] add HessenbergTransformer to transform a general real matrix to Hessenberg form.
This is a first step for the eigenvalue decomposition of a non-symmetric matrix.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1334463 13f79535-47bb-0310-9956-ffa450edef68

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e6ec59b107f2a2afafcb5734cf91fa49d8036fd0
1336225264
Thomas Neidhart
[MATH-759] cleanup unit test ListUnivariateImpl.

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8314db7b32c336a254cb7147868587fa5c3e5845
1336194622
Sebastien Brisard
In o.a.c.m3.optimization.general.AbstractLeastSquaresOptimizer
  - deprecated guessParametersErrors()
  - created getSigma() which should be used instead (but is not strictly equivalent).
Updated unit tests accordingly.

See MATH-784.

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e3a2f146dc12711654ddb08bf55fafdd63a7563e
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Thomas Neidhart
[MATH-627] avoid superfluous null checks in (Array)RealVector, thanks to Arno Ploese.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1334198 13f79535-47bb-0310-9956-ffa450edef68

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1335983317
Thomas Neidhart
[MATH-781] use epsilon criteria when deciding to drop columns after phase 1.

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1335968695
Gilles Sadowski
Javadoc.


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1335965161
Gilles Sadowski
Javadoc.


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1335937859
Sebastien Brisard
Standard unit test of least-squares optimizers based on NIST's Statistical Reference Datasets (StRD).

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1335785448
Sebastien Brisard
Added missing svn properties.

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1335785170
Sebastien Brisard
Checkstyle.

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1335784062
Sebastien Brisard
Factored out some redundant code.

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85ade8e9be42a31ef2233226ad014d0ba2646757
1335771718
Sebastien Brisard
Implemented convenience classes for easy access to NIST Statistical Reference Datasets (StRD).
These classes are used for unit testing of AbstractLeastSquaresOptimizer.

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dad8515776be558866206019b99d729664e92d99
1335767880
Sebastien Brisard
In o.a.c.m3.optimization.general.AbstractLeastSquaresOptimizer, improved the javadoc of guessParametersErrors() (MATH-784).

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1335694103
Gilles Sadowski
Relaxed tolerance in unit test (related to commit 1331849).


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f498331dda26df916adab7ebfca9d8cf292e3ad4
1335654347
Gilles Sadowski
MATH-783
Re-instated the relaxation of line search tolerances, which can lead to a
significant performance improvement.


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1335569441
Gilles Sadowski
MATH-782
Location of user-defined convergence check.


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1335442429
Gilles Sadowski
Added unit test.


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665a0f0f116e6e6f3e6c7d9f320395cdd3fe6945
1335434568
Gilles Sadowski
MATH-783
Made the internal "line" search use a stopping criterion based on function
values instead of domain values (as is the default in "BrentOptimizer").


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1335403978
Sebastian Bazley
Missing @Override

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1335403786
Sebastian Bazley
Add missing (?) @Override marker

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1335403694
Sebastian Bazley
Fix generics warning

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1335403176
Sebastian Bazley
Unused import

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1335403126
Sebastian Bazley
Missing @Deprecated marker

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1335402196
Sebastian Bazley
Javadoc: @value only works for compile-time constants

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216ac0065f5f75e72601b459c7b9415f81be17a8
1335365384
Gilles Sadowski
MATH-782
Moved incorrectly placed block of code (user-defined stopping criterion).
Added unit test.
New utility class for simple stopping criterion based on (univariate)
function values.


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1335183014
Gilles Sadowski
Formatting.


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1335173221
Gilles Sadowski
Formatting.


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Luc Maisonobe
avoid division by zero when dealing with single-point intervals sets

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Luc Maisonobe
improved javadoc

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Sebastian Bazley
Document why we are not using the simpler Hex constants

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Sebastian Bazley
Restore closing tag accidentally deleted in r1328492

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1334952911
Luc Maisonobe
Added a workaround for an OpenJDK issue on sparc solaris.

The compiler has issues with very small double constants, despite they
are perfectly legal Java and representable in IEEE754.

JIRA: MATH-721

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Gilles Sadowski
Added a unit test.


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Thomas Neidhart
[MATH-779] Fixed iterator() method in ListPopulation to return an iterator of the unmodifiable list, thanks to Reid Hochstedler.

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Thomas Neidhart
[MATH-775] reverted internal list in ListPopulation to private scope and added protected getter.

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Gilles Sadowski
Broken links in documentation.


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Thomas Neidhart
[MATH-775] remove getChromosomeList method and change internal list to protected.

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Thomas Neidhart
Add Reid Hochstedler to list of contributors in pom.xml after provided already 3 patches.

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Thomas Neidhart
[MATH-775] Cleanup ListPopulation class after suggestion from Reid Hochstedler,
added more sanity checks/exceptions in ctor and setters, unit tests, hide and protect internal representation.

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Thomas Neidhart
Javadoc and formatting fixes in ElitisticListPopulation.

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Thomas Neidhart
[MATH-776] Use same range check in ctor as in setter for ElitisticListPopulation.
Thanks to Reid Hochstedler

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Thomas Neidhart
MATH-767
Fixed unbalanced use of code tags in javadoc.
Thanks to Dennis Hendriks for reporting it.

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Thomas Neidhart
Added FixedElapsedTime stopping condition.
JIRA: MATH-773 contributed by Reid Hochstedler

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Sebastien Brisard
Javadoc.

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Sebastien Brisard
Updated changes.xml following resolution of MATH-756.

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Sebastian Bazley
DOcument how to use with CP release-notes profile

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Sebastian Bazley
Ignore .pmd file

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Sebastian Bazley
Only need one copy of the NOTE:; fix the VM template reference

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Sebastian Bazley
Avoid PMD syntax error by using alternate array syntax

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Sebastian Bazley
Update to CP24
Restore changes/JIRA reports accidentally dropped when tidying pom

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Gilles Sadowski
New "<release>" XML tag.


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6f13860b904557e675231400ffd31a2213014b92
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Sebastien Brisard
Created Decimal64, a wrapper class around the primitive double type.
This class implements FieldElement<Decimal64>.
See MATH-756.

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Sebastien Brisard
Changed o.a.c.m3.linear.SymmLQ according to MATH-771 (bis).

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Sebastien Brisard
Changed o.a.c.m3.linear.JacobiPreconditioner according to MATH-771.

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Sebastien Brisard
Changed o.a.c.m3.linear.SymmLQ according to MATH-771.

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Sebastien Brisard
Changed o.a.c.m3.linear.ConjugateGradient according to MATH-771.

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Sebastien Brisard
Changed o.a.c.m3.linear.PreconditionedIterativeLinearSolver according to MATH-771.

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Sebastien Brisard
Javadoc

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Sebastien Brisard
In o.a.c.m3.SymmLQ.State
  - the current solution is now refined at each iteration, as the overhead is negligible
  - SymmLQ.State.xL is no longer a reference to the parameter x passed to its constructor. This way, all transparent updates of the vector x are removed.
  - SymmLQ.State.moveToCG(RealVector) is renamed SymmLQ.State.refineSolution(RealVector).
In o.a.c.m3.SymmLQ.solveInPlace()
  - SymmLQ.State.init() is now called explicitly
  - a new DefaultIterativeLinearSolverEvent is created each time it is needed (no "clever" object reuse)
  - SymmLQ.State.refineSolution(RealVector) is called explicitly
See MATH-761.

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Sebastien Brisard
In SymmLQTest, testPreconditionedNormOfResidual() now passes.
Previous failure was due to the test itself, not to the implementation of SymmLQ.
See MATH-770.

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Sebastien Brisard
Corrected copy/paste typo, which caused ConjugateGradient to be tested in place of SymmLQ. Some tests now fail (see MATH-770).

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Sebastien Brisard
In o.a.c.m3.SymmLQ.State, created accessors
  - RealVector getRightHandSideVector(),
  - RealVector getSolution(),
  - double getNormOfResidual(),
see MATH-761.

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Sebastien Brisard
Replaced Math with FastMath.

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Sebastien Brisard
Modified unit test of o.a.c.m3.linear.SymmLQ to show that lines 1208-1209 are essential (see MATH-761).

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Sebastien Brisard
In org.apache.commons.math3.linear.SymmLQ.State, created
  - boolean bEqualsNullVector()
  - boolean betaIsZero()
to improve data encapsulation (see MATH-761).

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Sebastien Brisard
In o.a.c.m3.linear.SymmLQ.State, implemented hasConverged() so as to avoid
access to private field State.hasConverged through synthetic getters.


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Sebastien Brisard
In o.a.c.m3.SymmLQ: reduced visibility of some fields/methods (from protected
to package protected). See MATH-761.


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Sebastian Bazley
Incorrect property format

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Sebastian Bazley
Incorrect property format

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d0bed88899d4c8bd1e239def7533fcc701280fc1
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Sebastien Brisard
In class o.a.c.math3.linear.SymmLQ
  - Changed parameter order for the constructor of nested class State (for consistency with the constructor of SymmLQ).
  - Moved some static helper methods from SymmLQ to nested class State
  - Changed visibility of some static fields from private to protected in order to avoid the use of synthetic getters.
See MATH-761.


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Sebastian Bazley
Make State class static

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Thomas Neidhart
Fixed wrong links in user guide index.

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Sebastian Bazley
Drop obsolete Javadoc links
Re-order links to put background developer info lower down the list

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Sebastian Bazley
Add back 2.2 to download page

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Sebastian Bazley
3.0 has been released, bump snapshot version

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Sebastian Bazley
Fix up download properties and generated page

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Sebastian Bazley
minSeverity is now defined in commons parent

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Gary D. Gregory
Add missing Apache license headers.

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Gilles Sadowski
Preparing for release 3.0.


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Gilles Sadowski
Fixed CheckStyle warning.


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Gilles Sadowski
Removed unused file (template is now in "src/changes/release-notes.vm").


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Luc Maisonobe
fixed missing Apache header

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Gilles Sadowski
Preparing for release 3.0.


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Sebastian Bazley
Use the proper method to get the array length

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1330746924
Gilles Sadowski
Variable visibility: "protected" -> "private". Added "protected"
getter methods.


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Gilles Sadowski
Variable visibility: "protected" -> "private". Added "protected"
getter methods.


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1330743086
Gilles Sadowski
Variable visibility: "protected" -> "private". Had to delete a few trivial
tests that accessed the fields.


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Gilles Sadowski
Variable visibility: "protected" -> "private".


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Gilles Sadowski
Variable visibility: "protected" -> "private".


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Gilles Sadowski
Variable visibility: "protected" -> "private". Added getter methods.


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Gilles Sadowski
Changed variable visibility: "protected" -> "private".


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Sebastian Bazley
Use getter, and make underlying variable private

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Sebastian Bazley
Field might as well be private, as there's a public getter

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Sebastian Bazley
Use getter instead of direct array reference

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Sebastian Bazley
Use getter instead of direct array reference

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Sebastian Bazley
Field might as well be private, as there's a public getter

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Sebastian Bazley
Field might as well be private, as there's a public getter

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Sebastian Bazley
Field might as well be private, as there's a public getter

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Sebastian Bazley
Field might as well be private, as there's a public getter

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Sebastian Bazley
Formats might as well be private; there's a public getter which all subclasses use anyway

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Sebastian Bazley
DOcument thread-safety of "mutable" static fields (actually write-once)

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Gilles Sadowski
Disabled runtime recomputation of "FastMath" arrays.


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Sebastian Bazley
Make final, as init in static block

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Sebastian Bazley
Tab police

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Sebastian Bazley
Alignment

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Gilles Sadowski
Variable used for release candidate.


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Sebastian Bazley
CP 23 now contains the fix

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Sebastian Bazley
Allow pmd to be run iteractively; update to latest version

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Sebastian Bazley
Update dependency versions to latest

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Sebastian Bazley
Update plugin versions to latest

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Sebastian Bazley
typo

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Sebastian Bazley
Dummy serialversionuid to avoid Eclipse complaints

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Sebastian Bazley
Missing @Override

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Sebastian Bazley
New command for generating release notes

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Sebastian Bazley
Part of r1296359.

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1330712589
Sebastian Bazley
Fix up release notes to use locations and names expected by parent pom

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1330702177
Gilles Sadowski
Preparing release 3.0.


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1330683853
Gilles Sadowski
Adjusted copyright date.


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1330641605
Gilles Sadowski
Minor changes in release description.


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1330641026
Gilles Sadowski
Made inner class "static" because it is "Serializable" while the enclosing
class is not (bad practice signalled by "FindBugs").


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1330633570
Luc Maisonobe
Fixed a findbugs warning.

The setStepsizeControl method in GraggBulirschStoerIntegrator has been
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setStepSizeControl method.

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Gilles Sadowski
Fixed misuse of "Double.MIN_VALUE".


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1330609741
Gilles Sadowski
According to "FindBugs", negating the result of "compareTo" is bad
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Gilles Sadowski
Removed unused variable (discovered by "FindBugs").


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Gilles Sadowski
Reverted "-SNAPSHOT" suffix.


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Gilles Sadowski
Removed files not to be included in CM 3.0.


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Gilles Sadowski
Version upgrades (previous version of "findbugs" plugin did not work with
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Luc Maisonobe
Added a test.

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1330340913
Luc Maisonobe
removed obsolete files not referenced anymore

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Sebastien Brisard
BigReal.divide(BigReal) now throws MathArithmeticException (see MATH-755).

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Sebastien Brisard
BigFraction.divide(BigFraction) now throws MathArithmeticException (see MATH-755).

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Sebastien Brisard
Removed "throws ArithmeticException" from the signature of FieldElement<T>.divide(T), as this contract was too restrictive, and indeed broken by nearly all implementations of FieldElement<T>. See MATH-755.

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Luc Maisonobe
reverted vetoed code change about cloning literal arrays

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Gilles Sadowski
Preparing for release 3.0.


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Gilles Sadowski
Changed branching, such that the code complies with the definition
referred to in the doc. [Spotted by D. Hendriks.]


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1329951872
Gilles Sadowski
MATH-746
Removed strict equality special case.


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Gilles Sadowski
Replace accented character with html entity in order to avoid problems
on certain systems.


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1329921477
Gilles Sadowski
MATH-746
Listed some of the new features.


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Gilles Sadowski
Removed spurious initialization.


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Gilles Sadowski
MATH-746
Disabled a "FindBugs" check.


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Gilles Sadowski
Removed usage of non-localized error message. Changed exception type.


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Gilles Sadowski
MATH-746
Disabled a "FindBugs" check.


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Thomas Neidhart
Updated user guide for stat.inference and filter package.

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Gilles Sadowski
First stab at release description.


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Gilles Sadowski
Fixed links and some formatting in user guide.


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1329834716
Gilles Sadowski
Base package name: Changed "math" -> "math3" in userguide links.


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1329833811
Gilles Sadowski
Added section on "exceptions".


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Gilles Sadowski
Replaced svn tags by $Id$.


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1329610196
Gilles Sadowski
MATH-698


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1329609682
Gilles Sadowski
MATH-698
Made "CMAESOptimizer" a subclass of "BaseAbstractMultivariateSimpleBoundsOptimizer".
The original code does not support mixing finite and infinite bounds (no constraints)
on the variables; a check for this incompatibility is thus performed, throwing a
"MathUnsuppportedException" if failing.


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1329521158
Gilles Sadowski
Fixed exception type.


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Thomas Neidhart
Updated findbugs-exclude-list due to renamed classes.

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1329421302
Thomas Neidhart
Changed StorelessCovariance according to suggestions from psteitz.
JIRA: MATH-449

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53a80e57ce857902abf70ca67994773ac43da156
1329409106
Luc Maisonobe
Fixed javadoc.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1245062 13f79535-47bb-0310-9956-ffa450edef68

53a80e57ce857902abf70ca67994773ac43da156
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96673d8c60bc56640917a2f211838e7ea5fac0c4
1329409034
Luc Maisonobe
Removed unneeded clone.

The clone did not protect the array used, only the reference ones.
JIRA: MATH-650

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1245061 13f79535-47bb-0310-9956-ffa450edef68

96673d8c60bc56640917a2f211838e7ea5fac0c4
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4a6df444e0cd4bcf612a762bb75d3d0fd4394acb
1329403638
Gilles Sadowski
Fixed (de-)serialization bug.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1245003 13f79535-47bb-0310-9956-ffa450edef68

4a6df444e0cd4bcf612a762bb75d3d0fd4394acb
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05246720e03eb25652cf9999f94dad8001ab11d7
1329403333
Gilles Sadowski
MATH-444
"artifactId" value (in POM file) changed to "commons-math3".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1245000 13f79535-47bb-0310-9956-ffa450edef68

05246720e03eb25652cf9999f94dad8001ab11d7
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1450a1c6dbcba86c7f60eed3134bf18037b6949a
1329402597
Sebastien Brisard
"print" statement no longer useful.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1244996 13f79535-47bb-0310-9956-ffa450edef68

1450a1c6dbcba86c7f60eed3134bf18037b6949a
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bd56278bbd6dbcdbc74840d691a3ff734f357365
1329402150
Gilles Sadowski
MATH-746
Comment out "print" statement.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1244992 13f79535-47bb-0310-9956-ffa450edef68

bd56278bbd6dbcdbc74840d691a3ff734f357365
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e1eb19deae36ae2020486d9ab133e626da7c4fd0
1329399883
Gilles Sadowski
MATH-712
In prevision of the 3.0 release: Removed "throw" clauses and "print"
statements used for debugging.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1244975 13f79535-47bb-0310-9956-ffa450edef68

e1eb19deae36ae2020486d9ab133e626da7c4fd0
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7e2a00949a658add0f591394a0030e37c22406c5
1329375129
Sebastien Brisard
Checkstyle is skipped for o.a.c.m3.optimization.direct.BOBYQAOptimizer (MATH-746): added
// CHECkSTYLE: resume all
at the end of the file for security.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1244857 13f79535-47bb-0310-9956-ffa450edef68

7e2a00949a658add0f591394a0030e37c22406c5
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56c9e48cd0abed0b0146d1b0dd51f4c242e7237c
1329374613
Sebastien Brisard
Checkstyle is skipped for o.a.c.m3.optimization.direct.BOBYQAOptimizer (MATH-746).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1244855 13f79535-47bb-0310-9956-ffa450edef68

56c9e48cd0abed0b0146d1b0dd51f4c242e7237c
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695d2dc08b6baa4c08ea8d10633319f0e95874cf
1329348273
Gilles Sadowski
MATH-707
Renamed "UnivariateRealOptimizer" -> "UnivariateOptimizer".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1244787 13f79535-47bb-0310-9956-ffa450edef68

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0391a5f3cd03266a02221c784f748468932226f0
1329339950
Luc Maisonobe
Use literal arrays for FastMath pre-computed tables.

JIRA: MATH-650

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1244725 13f79535-47bb-0310-9956-ffa450edef68

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f5eaefbef6150aa77d94d6871decab650f0434f0
1329338840
Luc Maisonobe
Moved resources for error messages translations out of META-INF.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1244705 13f79535-47bb-0310-9956-ffa450edef68

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f6effc01997ee890a3e61d2dfd648d7364eb1945
1329338790
Luc Maisonobe
Improved errors messages consistency and added tests for translations.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1244703 13f79535-47bb-0310-9956-ffa450edef68

f6effc01997ee890a3e61d2dfd648d7364eb1945
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28e84c50ffafa1969a1dd9026df82bff87b60211
1329338749
Luc Maisonobe
Fixed reversed parameters in an error message.

Thanks to Dennis Hendriks for pointing this out.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1244699 13f79535-47bb-0310-9956-ffa450edef68

28e84c50ffafa1969a1dd9026df82bff87b60211
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e10108e46b22cbe5b9c0167c4fdb2969150c785c
1329335048
Thomas Neidhart
Updated findbugs exclude filter, deleted references to removed classes.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1244674 13f79535-47bb-0310-9956-ffa450edef68

e10108e46b22cbe5b9c0167c4fdb2969150c785c
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f2b7462cfa233439576314c2ff1a5872c680f3fa
1329333779
Thomas Neidhart
Added javadoc for StorelessCovariance, code cleanup.
JIRA: MATH-449 patch provided by Patrick Meyer

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1244667 13f79535-47bb-0310-9956-ffa450edef68

f2b7462cfa233439576314c2ff1a5872c680f3fa
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8409d9ad6019f22ea8609c18d54864da6dafb047
1329287405
Sebastien Brisard
Fixed Javadoc warnings.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1244375 13f79535-47bb-0310-9956-ffa450edef68

8409d9ad6019f22ea8609c18d54864da6dafb047
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31451a7dfb6a5e9193c6adb65226b0657ba430ec
1329239425
Thomas Neidhart
Fixed wrong javadoc reference.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1244130 13f79535-47bb-0310-9956-ffa450edef68

31451a7dfb6a5e9193c6adb65226b0657ba430ec
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6b1d5860c1c8ea8d7ed7705859a9b618c55a6f7c
1329239154
Sebastien Brisard
Simplified unit tests following changes proposed in MATH-743 (should have been committed with r1243595).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1244127 13f79535-47bb-0310-9956-ffa450edef68

6b1d5860c1c8ea8d7ed7705859a9b618c55a6f7c
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2d698e4905cb75bd125e2fe1f5223d7e68f0adcd
1329236275
Gilles Sadowski
MATH-444
Base package name change: "o.a.c.math" -> "o.a.c.math3"


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1244107 13f79535-47bb-0310-9956-ffa450edef68

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53257329dd394be1333b38bae787bf0cf19dc900
1329230051
Gilles Sadowski
MATH-744
"Double.MAX_EXPONENT" and "Float.MAX_EXPONENT" are not available in Java 5.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1243944 13f79535-47bb-0310-9956-ffa450edef68

53257329dd394be1333b38bae787bf0cf19dc900
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1a15d5f4c13eca0435b0ed7e6a624064e7f7e07f
1329225417
Gilles Sadowski
MATH-744
Fixed "doubleValue()" and "floatValue()" when numerator and denominator are
larger than the range of the corresponding primitive type.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1243912 13f79535-47bb-0310-9956-ffa450edef68

1a15d5f4c13eca0435b0ed7e6a624064e7f7e07f
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966d2eeef17b0b9bc7c07822be8da337bffedf97
1329217584
Gilles Sadowski
Fixed non-compilable tests.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1243876 13f79535-47bb-0310-9956-ffa450edef68

966d2eeef17b0b9bc7c07822be8da337bffedf97
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d50a175c5cfdea409519f1dd4662eee59f3340c8
1329150946
Sebastien Brisard
In package o.a.c.m.transform, created enum DstNormalization to be passed to the constructor of FastSineTransformer (instead of boolean parameter).
Made constructor public, and removed factory methods.
See MATH-743

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1243595 13f79535-47bb-0310-9956-ffa450edef68

d50a175c5cfdea409519f1dd4662eee59f3340c8
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ced14c6180260a08028837e50ef6298a615d921b
1329142941
Gilles Sadowski
Made code comply with Javadoc.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1243529 13f79535-47bb-0310-9956-ffa450edef68

ced14c6180260a08028837e50ef6298a615d921b
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ebf0cfcaeb32dd5bed801fbed23defb282d74774
1329142157
Gilles Sadowski
MATH-707
Deleted unused and redundant "VectorialConvergenceChecker".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1243521 13f79535-47bb-0310-9956-ffa450edef68

ebf0cfcaeb32dd5bed801fbed23defb282d74774
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b8733bab67b5b3fd1527f3e09f4dc5be4cc729f5
1329141631
Gilles Sadowski
Javadoc.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1243517 13f79535-47bb-0310-9956-ffa450edef68

b8733bab67b5b3fd1527f3e09f4dc5be4cc729f5
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de8756376187391605d3ec2208caf4f34b199d97
1329129353
Gilles Sadowski
MATH-488
Removed deprecated "MathException".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1243473 13f79535-47bb-0310-9956-ffa450edef68

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ac345ad9923907517742f28dcef43b273112bb83
1329128709
Gilles Sadowski
MATH-488
Removed last occurrences of "MathException" (appearing as a string and in
a commented-out unit test.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1243466 13f79535-47bb-0310-9956-ffa450edef68

ac345ad9923907517742f28dcef43b273112bb83
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44b558e14667d245cc4dafc2cc17224c1b25ada4
1329127824
Gilles Sadowski
MATH-459
Removed deprecated "MathRuntimeException".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1243460 13f79535-47bb-0310-9956-ffa450edef68

44b558e14667d245cc4dafc2cc17224c1b25ada4
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d6ddfb5701aa6d425e20f04ac48d64e4eda2e45c
1329090228
Gilles Sadowski
MATH-707
Renamed "SimpleVectorialValueChecker" to "SimpleVectorValueChecker".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1243370 13f79535-47bb-0310-9956-ffa450edef68

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ad57102c451b9b19cd224736e498658a95f6cebc
1329089904
Gilles Sadowski
MATH-707
"SimpleScalarValueChecker" renamed to "SimpleValueChecker".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1243366 13f79535-47bb-0310-9956-ffa450edef68

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21cb65e6365a89c9402b3c9a3d972be41d4605c9
1329089391
Gilles Sadowski
MATH-707
"SimpleRealPointChecker" and "SimpleVectorialPointChecker" are replaced by
the generic "SimplePointChecker" (instantiated using "PointValuePair" and
"PointVectorValuePair", respectively).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1243365 13f79535-47bb-0310-9956-ffa450edef68

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e038f286fc8c16904fdb7ddf808069cabd6739fd
1329076831
Gilles Sadowski
MATH-707
Renamed "VectorialPointValuePair" to "PointVectorValuePair" and made it a
subclass of "Pair<double[], double[]>".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1243310 13f79535-47bb-0310-9956-ffa450edef68

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02da49812adf20a56214a4b966725b87e7a41156
1329076240
Thomas Neidhart
Updated changes.xml with fix for MATH-739

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1243306 13f79535-47bb-0310-9956-ffa450edef68

02da49812adf20a56214a4b966725b87e7a41156
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cc9b8967b717d73f57944a10a9a1dd35c1aec0a6
1329075861
Thomas Neidhart
Merged TTest implementation and interface, removed use of MathException.
JIRA: MATH-488, MATH-739

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1243304 13f79535-47bb-0310-9956-ffa450edef68

cc9b8967b717d73f57944a10a9a1dd35c1aec0a6
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:100644 000000 7498f30299e07ec196f23872e28d4208343dc4fe 0000000000000000000000000000000000000000 D	src/main/java/org/apache/commons/math/stat/inference/TTestImpl.java
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:100644 100644 42b18beae40239749ad5137719fbcc8da341ed1f 4417844105357b70fb761133ed889ef90d7b41f6 M	src/test/java/org/apache/commons/math/stat/inference/TTestTest.java
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4fb7f83c535cad9b5f263108a60ad1726bda4565
1329070073
Thomas Neidhart
Merged ChiSquareTest implementation and interface, removed use of MathException.
JIRA: MATH-488, MATH-739

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1243286 13f79535-47bb-0310-9956-ffa450edef68

4fb7f83c535cad9b5f263108a60ad1726bda4565
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25ac724d40e889ba84b8157caee053b71f61f7a1
1329060538
Sebastien Brisard
As discussed on the mailing-list, Author and Date should not be used as svn:keywords.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1243264 13f79535-47bb-0310-9956-ffa450edef68

25ac724d40e889ba84b8157caee053b71f61f7a1
768f5bea53ba6ce8492f4728fca1ed64dc51781c
1329059895
Sebastien Brisard
In package o.a.c.m.transform, created enum DctNormalization to be passed to the constructor of FastCosineTransformer (instead of boolean parameter).
Made constructor public, and removed factory methods.
See MATH-743

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1243263 13f79535-47bb-0310-9956-ffa450edef68

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5a8be77a303c9e2f8c19d029e8628d7697fb581d
1329007043
Gilles Sadowski
MATH-707
Renamed "RealPointValuePair" to "PointValuePair" and made it a subclass
of "Pair<double[], Double>".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1243186 13f79535-47bb-0310-9956-ffa450edef68

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07480af7d0d60fb01b8ce956cc6ffec4031fd0d3
1328981910
Sebastien Brisard
In package o.a.c.m.transform
  - replaced RealTransformer.transform(double[]) and RealTransformer.inverseTransform(double[]) with RealTransformer.transform(double[], TransformType)
  - replaced RealTransformer.transform(UnivariateFunction, double, double, int) and RealTransformer.inverseTransform(UnivariateFunction, double, double, int) with RealTransformer.transform(UnivariateFunction, double, double, int, TransformType).

See MATH-743

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1243110 13f79535-47bb-0310-9956-ffa450edef68

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8b72006be46b68085b3cac5c65b810bc273bf5df
1328941455
Sebastien Brisard
- Changed enum FastFourierTransformer.DftNormalization to top-level enumeration (MATH-743).
- Moved part of the Javadoc of FastFourierTransformer to this new enum.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1243009 13f79535-47bb-0310-9956-ffa450edef68

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Sebastien Brisard
In o.a.c.m.transform, introduced an enumeration for the type (forward, inverse) of transform asked by the user (MATH-743).

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Luc Maisonobe
Adding missing id.

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Gilles Sadowski
Function "atan": Cosmetic changes + "final" keyword.


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Gilles Sadowski
Cosmetic changes + "final" keyword.


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Thomas Neidhart
Updated svn:keywords to include all required properties.

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Thomas Neidhart
Added missing svn:keywords prop for filter package.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1242237 13f79535-47bb-0310-9956-ffa450edef68

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6c2bc82c1bb4ca83535ee0b2694dcbcdf7da1340
1328773043
Sebastien Brisard
In o.a.c.m.transform.FastFourierTransformer
  - created enum Normalization{STANDARD, UNITARY}
  - removed factory methods create() and createUnitary(), and made constructor public
  - added parameter type to static method transformInPlace(double[][], Normalization, boolean)
See MATH-732

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1242230 13f79535-47bb-0310-9956-ffa450edef68

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Thomas Neidhart
Added since tag for filter package, minor javadoc fixes.

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6961b425200662ff28b494ca836650ea0ea8e7a0
1328741931
Thomas Neidhart
Merged interface and implementation of OneWayAnova, MannWhitneyUTest and WilcoxonSignedRankTest.
JIRA: MATH-739

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222c76544750905e3f638f567a8d6dc186c36d23
1328694633
Thomas Neidhart
Updated changes.xml with last fixes.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1241838 13f79535-47bb-0310-9956-ffa450edef68

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1328694316
Thomas Neidhart
Updated changes.xml with last fixes.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1241837 13f79535-47bb-0310-9956-ffa450edef68

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Thomas Neidhart
Added final modifier for parameters, minor formatting changes for stat.inference package

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2fa03a20bda2b6d0e88fd3cc52e73a66783c75dc
1328693227
Thomas Neidhart
Removed MathException from MannWhitneyUTest, improved javadoc, exceptions.
JIRA: MATH-488

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1328692040
Sebastien Brisard
Removed invocation of Java 6 Arrays methods (MATH-732).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1241824 13f79535-47bb-0310-9956-ffa450edef68

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Sebastien Brisard
Speed improvements to o.a.c.m.transform.FastFourierTransformer. Patch contributed by Kurt Ostfeld (MATH-732).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1241807 13f79535-47bb-0310-9956-ffa450edef68

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e67840f946a2fb0af40a5d07ca58b6a5517bb80a
1328652231
Thomas Neidhart
Exception handling in WilcoxonSignedRankTest made consistent with CM.
JIRA: MATH-488

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1241657 13f79535-47bb-0310-9956-ffa450edef68

e67840f946a2fb0af40a5d07ca58b6a5517bb80a
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df99e89902e194b0efbc6480e752ba3569f0e96d
1328649753
Thomas Neidhart
Added algorithm convergence throws clauses to OneWayAnova classes as replacement of the generic MathException.
JIRA: MATH-488

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1241632 13f79535-47bb-0310-9956-ffa450edef68

df99e89902e194b0efbc6480e752ba3569f0e96d
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8cbfe1b706cad70167c3d57dd5b9af211c9e8391
1328642972
Thomas Neidhart
Merged EmpiricalDistributionImpl into EmpiricalDistribution, updated javadoc.
JIRA: MATH-670

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1241567 13f79535-47bb-0310-9956-ffa450edef68

8cbfe1b706cad70167c3d57dd5b9af211c9e8391
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2e2a0aca2d6150c000e7eaa3e94da12097db6cd8
1328476404
Thomas Neidhart
Changed equality test for failing test. The previous change was simply wrong.
JIRA: MATH-588

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1240822 13f79535-47bb-0310-9956-ffa450edef68

2e2a0aca2d6150c000e7eaa3e94da12097db6cd8
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e67d4e77fe5408e212daa057fa59ffa6249b5e13
1328471569
Thomas Neidhart
Relaxed too strict equality test.
JIRA: MATH-588

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e67d4e77fe5408e212daa057fa59ffa6249b5e13
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263601a77802082d5cd6388bc151a41fd9337fd9
1328303338
Thomas Neidhart
Removed last use of MathRuntimeException from test classes.
JIRA: MATH-459

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1240340 13f79535-47bb-0310-9956-ffa450edef68

263601a77802082d5cd6388bc151a41fd9337fd9
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dada2f9432b6e13b5af81266b7cb38b0afe00e8a
1328297329
Thomas Neidhart
Fixed exceptions for OneWayAnova interface and impl, removed never thrown MathException.
JIRA: MATH-488 MATH-459

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1240310 13f79535-47bb-0310-9956-ffa450edef68

dada2f9432b6e13b5af81266b7cb38b0afe00e8a
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84394a9e6c12d7651871ff764979db6797d4375e
1328295455
Thomas Neidhart
Removed usage of MathRuntimeException in MultivariateSummaryStatistics.
JIRA: MATH-459

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1240291 13f79535-47bb-0310-9956-ffa450edef68

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d8f5555474cd388e7afc93deca55d72a672fa5ac
1328293456
Thomas Neidhart
Fixed failing unit test after change to NumberFormat.

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d8f5555474cd388e7afc93deca55d72a672fa5ac
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89040e46415f080a2eaad7a9bf732cc047800135
1328293161
Thomas Neidhart
Replaced MathRuntimeException in util package.
JIRA: MATH-459

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1240280 13f79535-47bb-0310-9956-ffa450edef68

89040e46415f080a2eaad7a9bf732cc047800135
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00fcbbbda6b7b53f5162d22ce9df9fe34079c25d
1328293041
Thomas Neidhart
Removed usage of MathException in NumberTransformer and related classes.

JIRA: MATH-488

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1240279 13f79535-47bb-0310-9956-ffa450edef68

00fcbbbda6b7b53f5162d22ce9df9fe34079c25d
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fafc61ea776208fb6af99e36c68afb164f0afae8
1328292612
Thomas Neidhart
Fixed javadoc in genetics package.

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fafc61ea776208fb6af99e36c68afb164f0afae8
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4918ffceb499c6f5d57f2bc4a48f28380d22c6b6
1328290682
Thomas Neidhart
Fixed checkstyle and javadoc warnings in package ode

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4918ffceb499c6f5d57f2bc4a48f28380d22c6b6
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7273ca129874dc511800d3a379c370d39dcb1bcf
1328252463
Sebastien Brisard
- deprecated o.a.c.m.transform.FastFourierTransformer.mdfft(Object, boolean)
- deprecated o.a.c.m.transform.FastFourierTransformer.MultiDimensionalComplexMatrix
see MATH-736

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1240012 13f79535-47bb-0310-9956-ffa450edef68

7273ca129874dc511800d3a379c370d39dcb1bcf
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c51275303efe4910496494c8248bf4d3055a8ef4
1328216574
Thomas Neidhart
Changed deprecated MathRuntimeException in package stat.regression
JIRA: MATH-459

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1239842 13f79535-47bb-0310-9956-ffa450edef68

c51275303efe4910496494c8248bf4d3055a8ef4
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9744c652bf8be7ecf69159aada16da121db9d1be
1328213994
Thomas Neidhart
Minor checkstyle fixes in optimization.[direct|linear].

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1239805 13f79535-47bb-0310-9956-ffa450edef68

9744c652bf8be7ecf69159aada16da121db9d1be
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d1c0554a68e8deed374dd561df13ff51b03e6e79
1328213796
Thomas Neidhart
Changed deprecated MathRuntimeException in package stat.correlation
JIRA: MATH-459

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1239802 13f79535-47bb-0310-9956-ffa450edef68

d1c0554a68e8deed374dd561df13ff51b03e6e79
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7695f21454e2715410153dfdadb41a89bf2c6619
1328212317
Thomas Neidhart
Changed deprecated MathRuntimeException to MathIllegalStateException
JIRA: MATH-459

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1239793 13f79535-47bb-0310-9956-ffa450edef68

7695f21454e2715410153dfdadb41a89bf2c6619
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2cb250cff282718bfb19167365910c967b28e21e
1328199075
Gilles Sadowski
MATH-734
Initialize "final" fields at point of declaration.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1239694 13f79535-47bb-0310-9956-ffa450edef68

2cb250cff282718bfb19167365910c967b28e21e
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67c4dfdb956e01c3df708524fbd4523c7220f0cc
1328196708
Gilles Sadowski
Javadoc.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1239671 13f79535-47bb-0310-9956-ffa450edef68

67c4dfdb956e01c3df708524fbd4523c7220f0cc
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bf5de5b53ca5497031c7b2c9251ea063b30c3628
1328182605
Sebastien Brisard
Corrected wrong translation.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1239554 13f79535-47bb-0310-9956-ffa450edef68

bf5de5b53ca5497031c7b2c9251ea063b30c3628
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ee3b20cbc1d264af2ca5493aff63d51708eeb0b4
1328139346
Gilles Sadowski
Javadoc.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1239404 13f79535-47bb-0310-9956-ffa450edef68

ee3b20cbc1d264af2ca5493aff63d51708eeb0b4
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e89852254bd18ab27b334e54021887b8ccba588d
1328137460
Gilles Sadowski
MATH-707
Renamed "UnivariateRealIntegrator" to "UnivariateIntegrator" and
"UnivariateRealIntegratorImpl" to "BaseAbstractUnivariateIntegrator".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1239390 13f79535-47bb-0310-9956-ffa450edef68

e89852254bd18ab27b334e54021887b8ccba588d
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e45ec57f8f230419ac7408e181b2a8648fb9d9c6
1328063414
Sebastien Brisard
Changed serial version UID following r1238898.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1238907 13f79535-47bb-0310-9956-ffa450edef68

e45ec57f8f230419ac7408e181b2a8648fb9d9c6
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3bc3c15e2d33d7217aa3092f320d5f09774cc44a
1328062920
Sebastien Brisard
In o.a.c.m.linear
- Removed tagging interface ProvidesResidual
- added double IterativeLinearSolverEvent.getNormOfResidual()
- added RealVector IterativeLinearSolverEvent.getResidual() (optional operation)
- added boolean IterativeLinearSolverEvent.providesResidual()
- added default implementation DefaultIterativeLinearSolverEvent
see MATH-735.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1238905 13f79535-47bb-0310-9956-ffa450edef68

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29f55a6a8e32554310c74e5b1aaed73ea8c24cd0
1328061056
Sebastien Brisard
In o.a.c.m.complex.RootsOfUnity
- renamed computeOmega(int) to computeRoots(int)
- renamed getOmegaReal(int) to getReal(int)
- renamed getOmegaImaginary(int) to getImaginary(int)
- added int getNumberOfRoots()
- added unit tests.
See MATH-677

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1238898 13f79535-47bb-0310-9956-ffa450edef68

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882a2ff331464c441e02f9b26b9ac8440409e9fe
1328000179
Gilles Sadowski
MATH-707
Renamed classes in package "interpolation".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1238279 13f79535-47bb-0310-9956-ffa450edef68

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c2da421878f5df7c60305f07c874652107b47ec3
1327993378
Sebastien Brisard
Updates to FastFourierTransformer, following changes to RootsOfUnity in r1238179. See MATH-677.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1238180 13f79535-47bb-0310-9956-ffa450edef68

c2da421878f5df7c60305f07c874652107b47ec3
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6442d50c8189f2f86fd75f6e5863d9471d9a7e2a
1327993263
Sebastien Brisard
Refactoring following the promotion of embedded class o.a.c.m.transform.FastFourierTransformer.RootsOfUnity to standalone class o.a.c.m.complex.RootsOfUnity
- computeOmega(int n) now computes exp(2 * pi * i * k / n), k = 0, ..., n - 1, instead of exp(-2 * pi * i * k / n) (which was more natural for FFT).
- isForward() does not mean anything outside the FFT context. It has been renamed isCounterClockwise(), which refers to the way the roots of unity are ordered.
See MATH-677.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1238179 13f79535-47bb-0310-9956-ffa450edef68

6442d50c8189f2f86fd75f6e5863d9471d9a7e2a
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56805102a54406349b39e1f489293c02526b0ce0
1327905046
Sebastien Brisard
Moved private class o.a.c.m.transform.FastFourierTransformer.RootsOfUnity to o.a.c.m.complex.RootsOfUnity (MATH-677).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1237544 13f79535-47bb-0310-9956-ffa450edef68

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40ee2982712bfde8b99583cfdd7c2f17a1965317
1327829970
Sebastien Brisard
Changes to iterative linear solvers in package o.a.c.m.linear (MATH-735)
- PreconditionedIterativeLinearSolver is now provided with the *inverse* of the preconditioner as a RealLinearOperator, rather than the preconditioner as an InvertibleRealLinearOperator
- InvertibleRealLinearOperator has become superfluous and is removed
- various javadoc fixes

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1237229 13f79535-47bb-0310-9956-ffa450edef68

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05a5b0022899959bacbc739a4ded42f2b6f86221
1327763442
Sebastien Brisard
Added method o.a.c.m.linear.IterativeLinearSolverEvent.getNormOfResidual() (MATH-735).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1237069 13f79535-47bb-0310-9956-ffa450edef68

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d34f4af471f656ee51054e7dd7804e38b5c67787
1327756754
Sebastien Brisard
Added method getIterations() in o.a.c.m.utils.IterationEvent (MATH-735).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1237056 13f79535-47bb-0310-9956-ffa450edef68

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bc097a723c2fe881a7def4a4dbf2b4bc84ee6853
1327740609
Sebastien Brisard
In TriangularDistribution, changed the value of the solver absolute accuracy, and updated Javadoc accordingly (MATH-731).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1237026 13f79535-47bb-0310-9956-ffa450edef68

bc097a723c2fe881a7def4a4dbf2b4bc84ee6853
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6dde208f33e4fec50df2b2fb1e6ce28e912cee44
1327709181
Gilles Sadowski
Math-707
Renamed "TrivariateRealFunction" to "TrivariateFunction".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1236932 13f79535-47bb-0310-9956-ffa450edef68

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0d7d026a48762fc49659e5c9e4b3717345257776
1327670592
Gilles Sadowski
MATH-707
Renamed "BivariateRealFunction" to "BivariateFunction".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1236676 13f79535-47bb-0310-9956-ffa450edef68

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65ed08e15af15617e967d3ea9d635dc55a0ef866
1327647619
Sebastien Brisard
Introduced tests to guard against overflow (MATH-722). Corrected Javadoc and updated unit tests accordingly.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1236548 13f79535-47bb-0310-9956-ffa450edef68

65ed08e15af15617e967d3ea9d635dc55a0ef866
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de147e5cc14f8dac6da785289421a55b11d21aa6
1327503410
Sebastian Bazley
MATH-650 FastMath has static code which slows the first access to FastMath
Protect array entries against malicious or accidental corruption by returning a clone

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1235784 13f79535-47bb-0310-9956-ffa450edef68

de147e5cc14f8dac6da785289421a55b11d21aa6
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0482f58cd0e23a19ad8ed8c0e0a686719141942f
1327400233
Thomas Neidhart
Fixed localized exception messages according to review of Gilles
JIRA: MATH-575

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1235197 13f79535-47bb-0310-9956-ffa450edef68

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947d3420b62e8f7aadc5f3fbd1ceac0463c33937
1327357597
Thomas Neidhart
Added localized messages for exceptions thrown in the genetics package,
improved javadoc, added final for parameters.
JIRA: MATH-575

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1235038 13f79535-47bb-0310-9956-ffa450edef68

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09fd185dcad24877a19a6318b2cd1845e8b36c22
1327325610
Gilles Sadowski
MATH-707
Removed "Real" from class names in package "o.a.c.m.analysis.solvers".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1234784 13f79535-47bb-0310-9956-ffa450edef68

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b22056ad99528113348e9240fcf718d3c2ca6bd8
1327301248
Sebastien Brisard
Widened the scope of tests for transform.FastSineTransformer (MATH-677).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1234685 13f79535-47bb-0310-9956-ffa450edef68

b22056ad99528113348e9240fcf718d3c2ca6bd8
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798554a8d1decc35fdb8d6c0043f893d12facfed
1327234761
Thomas Neidhart
Added entry in changes.xml for MATH-652.

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dc782783130f819962c8ab83269dd8617817a9c5
1327231166
Thomas Neidhart
Fixed faulty test for zero in TridiagonalTransformer

JIRA: MATH-652
Reported and patched by Greg Sterijevski

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1234486 13f79535-47bb-0310-9956-ffa450edef68

dc782783130f819962c8ab83269dd8617817a9c5
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1935989fac4493870a185e9c4eaee481a968aac4
1327093469
Sebastien Brisard
Widened the scope of tests for transform.FastCosineTransformer (MATH-677).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1234136 13f79535-47bb-0310-9956-ffa450edef68

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415fdc39d721c94d0013da40a1e934732d1c9a40
1327012148
Thomas Neidhart
Added myself to pom.xml as developer.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1233608 13f79535-47bb-0310-9956-ffa450edef68

415fdc39d721c94d0013da40a1e934732d1c9a40
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4552822ea2525e835a37aa9ac1dacc96011d2782
1326903768
Gilles Sadowski
Code and Javadoc cleanup.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1232948 13f79535-47bb-0310-9956-ffa450edef68

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14ab4428bda75f81344b103572a3514df6c3ebf6
1326896606
Gilles Sadowski
Code cleanup: One-letter instance variables should not be used.


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1326888003
Gilles Sadowski
Javadoc.


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59bd46bae7e8e8dc2be5cc319564b31ae20d5d81
1326887808
Gilles Sadowski
MATH-664
Replaced "LUDecomposition" by "QRDecomposition" in the covariance matrix
computation.


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32bd7b27db70867e4dd789c512b9093ae0f9b384
1326873021
Sebastien Brisard
Test was no longer expecting the correct exception following r1232759.

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32bd7b27db70867e4dd789c512b9093ae0f9b384
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0b144c231967ee5f992930d5b47d2a00f16e129f
1326871068
Sebastien Brisard
Widened the scope of tests for transform.FastFourierTransformer (MATH-677).

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641d435478c303af33d1299ee6a8069b351a0a29
1326868684
Sebastien Brisard
In analysis.FunctionUtils.sample, changed the exception to be thrown when bounds are invalid.

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641d435478c303af33d1299ee6a8069b351a0a29
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d4df0e5382524acc79f5c392ad2c51a843b43f65
1326867425
Sebastien Brisard
In LogNormalDistribution and LogNormalDistributionTest
  - "mean" (of the underlying normal distribution) is now called "scale"
  - "standard deviation" (of the underlying normal distribution) is now called "shape"
  - in the javadoc, removed html links that point to internal anchors.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1232755 13f79535-47bb-0310-9956-ffa450edef68

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1326784962
Sebastien Brisard
Javadoc (MATH-733).

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4e026a14f3734ad7dc0907f51ba8394874038553
1326784322
Sebastien Brisard
Implementation of log-normal distributions (MATH-733). Patch contributed by Dennis Hendriks.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1232324 13f79535-47bb-0310-9956-ffa450edef68

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b5c53681d847433c5c2f169d129ecbfeff8f30d4
1326695907
Sebastien Brisard
Removed unchecked exceptions from method signatures. See
  - Commons-Dev mailing list http://mail-archives.apache.org/mod_mbox/commons-dev/201201.mbox/%3C20120113105913.GM6537%40dusk.harfang.homelinux.org%3E
  - "Effective Java, second edition", item 62.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1231847 13f79535-47bb-0310-9956-ffa450edef68

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bb06e31d27ea3a58ac4a82c28eda6aff55d6bda8
1326468814
Gilles Sadowski
Added a test.


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bb06e31d27ea3a58ac4a82c28eda6aff55d6bda8
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2fab8c533cfdd1cad55d6d9b2f9a0170c8510a1f
1326446615
Sebastien Brisard
Removed unnecessary import (MATH-731).

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2fab8c533cfdd1cad55d6d9b2f9a0170c8510a1f
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d7238cad823da5d2edce8ec9fb8341623eee1fe1
1326438679
Sebastien Brisard
Javadoc
Added optional support for transposition of linear operators.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1230907 13f79535-47bb-0310-9956-ffa450edef68

d7238cad823da5d2edce8ec9fb8341623eee1fe1
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b4af1eccf206ecbeacdc774930461c6a03678810
1326438250
Sebastien Brisard
Javadoc
Made sure that exceptions are documented in both javadoc and method signatures.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1230906 13f79535-47bb-0310-9956-ffa450edef68

b4af1eccf206ecbeacdc774930461c6a03678810
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f84d2e0666306d510837b3129c50fb1a31e11e1c
1326373546
Gilles Sadowski
MATH-664
Added a user-defined singularity threshold (with 0 as default to retain
previous behaviour).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1230509 13f79535-47bb-0310-9956-ffa450edef68

f84d2e0666306d510837b3129c50fb1a31e11e1c
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af70c52064631986bee5cbe3d409a84693e02333
1326355709
Sebastien Brisard
Removed invocations of some Java 1.6 methods (MATH-731).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1230435 13f79535-47bb-0310-9956-ffa450edef68

af70c52064631986bee5cbe3d409a84693e02333
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705c8bf015b56a5a01bd50f9776f4e65f2f7292c
1326351703
Sebastien Brisard
Implementation of continuous triangular distributions (MATH-731). Patch contributed by Dennis Hendriks.

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c9e3f7f393bd00384b049a94f488b4b129c07e8e
1326264573
Sebastien Brisard
More thorough testing of FastFourierTransformer (MATH-677).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1229905 13f79535-47bb-0310-9956-ffa450edef68

c9e3f7f393bd00384b049a94f488b4b129c07e8e
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37d45af4f4732f8fc03ae451869e7302fe21709e
1326095946
Sebastien Brisard
Javadoc (MATH-730).

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37d45af4f4732f8fc03ae451869e7302fe21709e
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f5d72c55252e6f9f6567a9cb2caaa007c80534cc
1326095307
Sebastien Brisard
Javadoc (MATH-730).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1229048 13f79535-47bb-0310-9956-ffa450edef68

f5d72c55252e6f9f6567a9cb2caaa007c80534cc
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b1fe1058f3ae218fa1f5a1041c1916b0e358dcc9
1326094699
Sebastien Brisard
Javadoc (MATH-730).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1229046 13f79535-47bb-0310-9956-ffa450edef68

b1fe1058f3ae218fa1f5a1041c1916b0e358dcc9
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54b1ea1c3e9b6a4df8d258086d280abc04b67bd5
1326092528
Sebastien Brisard
Implementation of uniform distributions (real + integer). See MATH-730. Patch contributed by Dennis Hendriks.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1229042 13f79535-47bb-0310-9956-ffa450edef68

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d1551969085eb52e591732d060779f130a9b8aaa
1325736909
Sebastien Brisard
Updated serialVersionUID. Related to MATH-677.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1227477 13f79535-47bb-0310-9956-ffa450edef68

d1551969085eb52e591732d060779f130a9b8aaa
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71df52260c47f73a7d1c3f5ff54787b31ccd0dc8
1325736595
Sebastien Brisard
Javadoc

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1227476 13f79535-47bb-0310-9956-ffa450edef68

71df52260c47f73a7d1c3f5ff54787b31ccd0dc8
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cebe0505eeb25a7303b1fae3764d5c583ccbfb0a
1325736498
Sebastien Brisard
Moved
  - transform.FastFourierTransformer.scaleArray(Complex[], double)
  - transform.FastFourierTransformer.scaleArray(double[], double)
to newly created class transform.TransformUtils.

Related to MATH-677.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1227475 13f79535-47bb-0310-9956-ffa450edef68

cebe0505eeb25a7303b1fae3764d5c583ccbfb0a
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ba827efe76bda9b69f7121af9cbbf6506d270f8b
1325735516
Sebastien Brisard
Inlined
  - transform.FastFourierTransformer.verifyDataSet(double[])
  - transform.FastFourierTransformer.verifyDataSet(Object[])
to improve readability.

Related to MATH-677.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1227470 13f79535-47bb-0310-9956-ffa450edef68

ba827efe76bda9b69f7121af9cbbf6506d270f8b
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7f5762d469f5ecc0ea100113a92c9371ef50ddcd
1325735207
Sebastien Brisard
Moved
transform.FastFourierTransformer.sample(UnivariateFunction, double, double, int)
to
analysis.FunctionUtils.sample(UnivariateFunction, double, double, int)
and created simple unit tests.

Related to MATH-677.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1227468 13f79535-47bb-0310-9956-ffa450edef68

7f5762d469f5ecc0ea100113a92c9371ef50ddcd
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89153e715c6b22bff7f837bf553c5095028a6621
1325648866
Sebastien Brisard
Moved o.a.c.m.transform.FastFourierTransformer.isPowerOf2 to o.a.c.m.util.ArithmeticUtils.isPowerOfTwo (MATH-677).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1227042 13f79535-47bb-0310-9956-ffa450edef68

89153e715c6b22bff7f837bf553c5095028a6621
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b255e2c8c8f5f8514dbb8bd43dc2b13a373ecc80
1325640683
Sebastien Brisard
Javadoc (MATH-677).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1227015 13f79535-47bb-0310-9956-ffa450edef68

b255e2c8c8f5f8514dbb8bd43dc2b13a373ecc80
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188ef9cfd13fd94f4fab18e750adff021d1e4ae6
1325638639
Sebastien Brisard
Removed references to deprecated MathRuntimeException (MATH-677).

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188ef9cfd13fd94f4fab18e750adff021d1e4ae6
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2cec1fffced9df9c5659aa16a9150f1b2a20f7f8
1325572157
Sebastien Brisard
Removed references to deprecated MathRuntimeException (MATH-677). 

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2cec1fffced9df9c5659aa16a9150f1b2a20f7f8
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999b7d32c42c248470e286a5f50b029020ed66ca
1325488798
Sebastien Brisard
Removed references to deprecated MathRuntimeException (MATH-677). 

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8e3e57b778bd18e646b405020181f8db784c8b58
1325343014
Sebastien Brisard
Reseeded Well1024aTest.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1226096 13f79535-47bb-0310-9956-ffa450edef68

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0054e338d755f10572c96b32024e5f0bcc9f5431
1325324291
Sebastien Brisard
Removed references to MathRuntimeException (MATH-677).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1226053 13f79535-47bb-0310-9956-ffa450edef68

0054e338d755f10572c96b32024e5f0bcc9f5431
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711d6b94a120d413e9d8bd21bb26ec7d0aeecc39
1325308728
Sebastien Brisard
Modifications to the hierarchy of distributions, according to MATH-692. Patch contributed by Christian Winter.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1226041 13f79535-47bb-0310-9956-ffa450edef68

711d6b94a120d413e9d8bd21bb26ec7d0aeecc39
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:100644 100644 61eeb4fff31d5e630fd549ee7f140658551af178 d6346cc7f84b92499c8e34dbb48aa4ae59745d6c M	src/test/java/org/apache/commons/math/random/ISAACTest.java
:100644 100644 33632d857c6529a0963274187a586d05cfda3e39 6d1df4053309032836c8a0abe6f197173af2a093 M	src/test/java/org/apache/commons/math/random/RandomDataTest.java
:100644 100644 cbbaa25a01e1918984dbcf7ed1608c7cb10143ba 61707fdcb8a1678165da2bd625879120dfd68ed8 M	src/test/java/org/apache/commons/math/random/RandomGeneratorAbstractTest.java
:100644 100644 05f66c804e2167deb4a2dd37c142158516e9e065 e8821bcc6f9205350cb6c06ef806e378c363afe2 M	src/test/java/org/apache/commons/math/random/Well1024aTest.java

f6fddf94c74502469c013ed94599bbd7fa2d89e7
1325258497
Sebastien Brisard
Dummy commit (take 2, back to normal) to try and understand the problems discussed on the mailing list (see http://mail-archives.apache.org/mod_mbox/commons-dev/201112.mbox/%3CCAGRH7Hp6%3D8htP%2BDArQ_zZOYLUOCzASX%3Dq6%3DkYm%2BVQ_X%2BH8Ew4w%40mail.gmail.com%3E).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1225844 13f79535-47bb-0310-9956-ffa450edef68

f6fddf94c74502469c013ed94599bbd7fa2d89e7
:100644 100644 652b51782b8d9609d6fae67344f173d56959bab9 3d6cc39a7f2917b7284bc6369c6f843bc92eba66 M	src/main/java/org/apache/commons/math/distribution/BinomialDistribution.java

55259fea9f1c6e1c5319388883e5eece76b8ab46
1325258384
Sebastien Brisard
Dummy commit (take 2) to try and understand the problems discussed on the mailing list (see http://mail-archives.apache.org/mod_mbox/commons-dev/201112.mbox/%3CCAGRH7Hp6%3D8htP%2BDArQ_zZOYLUOCzASX%3Dq6%3DkYm%2BVQ_X%2BH8Ew4w%40mail.gmail.com%3E).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1225843 13f79535-47bb-0310-9956-ffa450edef68

55259fea9f1c6e1c5319388883e5eece76b8ab46
:100644 100644 3d6cc39a7f2917b7284bc6369c6f843bc92eba66 652b51782b8d9609d6fae67344f173d56959bab9 M	src/main/java/org/apache/commons/math/distribution/BinomialDistribution.java

3dedb209ccb6ebfe51858afd7b10c8ae8b9a9555
1325258058
Sebastien Brisard
Dummy commit to try and understand the problems discussed on the mailing list (see http://mail-archives.apache.org/mod_mbox/commons-dev/201112.mbox/%3CCAGRH7Hp6%3D8htP%2BDArQ_zZOYLUOCzASX%3Dq6%3DkYm%2BVQ_X%2BH8Ew4w%40mail.gmail.com%3E).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1225841 13f79535-47bb-0310-9956-ffa450edef68

3dedb209ccb6ebfe51858afd7b10c8ae8b9a9555
:100644 100644 393290c5605dc604346fafb19c45c278830aba81 3d6cc39a7f2917b7284bc6369c6f843bc92eba66 M	src/main/java/org/apache/commons/math/distribution/BinomialDistribution.java

3dcd107b3b4dce367cf31edd094b7e2c9c13e17e
1325257891
Sebastien Brisard
Dummy commit to try and understand the problems discussed on the mailing list (see http://mail-archives.apache.org/mod_mbox/commons-dev/201112.mbox/%3CCAGRH7Hp6%3D8htP%2BDArQ_zZOYLUOCzASX%3Dq6%3DkYm%2BVQ_X%2BH8Ew4w%40mail.gmail.com%3E).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1225839 13f79535-47bb-0310-9956-ffa450edef68

3dcd107b3b4dce367cf31edd094b7e2c9c13e17e
:100644 100644 3d6cc39a7f2917b7284bc6369c6f843bc92eba66 393290c5605dc604346fafb19c45c278830aba81 M	src/main/java/org/apache/commons/math/distribution/BinomialDistribution.java

cda45241f363c82077a5204bf8bce51712ed26be
1324755006
Daniel Shahaf
dummy commit

Trying to commit WeibullDistribution.java using 1.7.0 to harmonia


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1223005 13f79535-47bb-0310-9956-ffa450edef68

cda45241f363c82077a5204bf8bce51712ed26be
:100644 100644 e7365e93aff7a70adb331b5270235e2211bff689 36b367b929b7812b9ec15fdf327eba65dae05787 M	src/main/java/org/apache/commons/math/distribution/WeibullDistribution.java

66f81698401ebef6a2da8930ff317676da6d1e39
1324754912
Daniel Shahaf
dummy commit

Trying to reproduce the error reported on infra@,
using 1.7.0, committing to harmonia

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1223004 13f79535-47bb-0310-9956-ffa450edef68

66f81698401ebef6a2da8930ff317676da6d1e39
:100644 100644 cc0150843f0c75f9d48563c00cbcb75b8358c34a fb202eb2a367644363d72b5aadbdcbdd76d0da4f M	src/main/java/org/apache/commons/math/distribution/AbstractRealDistribution.java
:100644 100644 3f0786760cc0d4b5b82caba1ca47305d4ee17a19 3170b574c4c0251defab41f908b94fae7857f7c0 M	src/main/java/org/apache/commons/math/distribution/PascalDistribution.java
:100644 100644 1b5736ab5a729a55f5f719d4ba3e7ab74c8b639a ea1258815432b87bfc65407f5354a5d2eb28c16d M	src/main/java/org/apache/commons/math/distribution/ZipfDistribution.java

99fe5ba973b136f458e954dec1062bf7d9cd2a8c
1324659237
Phil Steitz
Removed self from team list.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1222748 13f79535-47bb-0310-9956-ffa450edef68

99fe5ba973b136f458e954dec1062bf7d9cd2a8c
:100644 100644 b8a8c87176c74e109107810e6152bae2545d530e 2ed8209b5bcb381a1ab9fe8777fa2b3f5ef90779 M	pom.xml

72d2416fbfa179fd08f38f477e6f4688b4dca3b1
1324627202
Luc Maisonobe
make sure versions numbers are consistents (will be updated again upon release)

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1222601 13f79535-47bb-0310-9956-ffa450edef68

72d2416fbfa179fd08f38f477e6f4688b4dca3b1
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17c6d82a8a89f83087fd1f37d46fe6e0041e95ae
1324427481
Gilles Sadowski
Name misspelled.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1221537 13f79535-47bb-0310-9956-ffa450edef68

17c6d82a8a89f83087fd1f37d46fe6e0041e95ae
:100644 100644 7594abd1de46629115c63620bc060bd1f018469c e21bc85a6bb91df1f5f96806ef98daf9be3e2fe3 M	src/site/xdoc/changes.xml

6ae7300e18b0a98dd2b1e54dd90c2f2eaab20d84
1324420699
Phil Steitz
Javadoc.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1221507 13f79535-47bb-0310-9956-ffa450edef68

6ae7300e18b0a98dd2b1e54dd90c2f2eaab20d84
:100644 100644 16d655bb838a8d908101ff6bdda583e1104cc88f 908c47dbf638de3a1920bd56c0ee62592bacbf79 M	src/main/java/org/apache/commons/math/random/RandomDataImpl.java

2701ed7e2e534de65e672e0c54664ddef217e962
1324419349
Phil Steitz
Loosen tolerance a little to avoid spurious failure.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1221505 13f79535-47bb-0310-9956-ffa450edef68

2701ed7e2e534de65e672e0c54664ddef217e962
:100644 100644 6a689bf0df7359f1a1cf5e93196c4b90589763a7 33632d857c6529a0963274187a586d05cfda3e39 M	src/test/java/org/apache/commons/math/random/RandomDataTest.java

71bc39e0beb9ac121c22339944ae14e4095dd0cd
1324415278
Phil Steitz
Fixed rounding error in RandomDataImpl nextInt, nextLong methods causing lower
endpoints to be excluded when negative. Also improved robustness of nextUniform
for extreme values and changed its contract to throw IAE when provided bounds
are infinite or NaN.

JIRA: MATH-724
Reported and patched by Dennis Hendricks



git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1221490 13f79535-47bb-0310-9956-ffa450edef68

71bc39e0beb9ac121c22339944ae14e4095dd0cd
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91cc42ba0493938aa53585720b315b62c5784a96
1324387829
Gilles Sadowski
MATH-728
Offset by one bug. Suggested fix provided by Bruce Johnson.
I've added a unit test that exercises the use of more interpolation points;
two previously unexplored code paths are now being traversed.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1221253 13f79535-47bb-0310-9956-ffa450edef68

91cc42ba0493938aa53585720b315b62c5784a96
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74e00296574dc3ac0bc064fc3258faabaf732d6c
1324140925
Luc Maisonobe
Check first step size in embedded Runge-Kutta integrators.

JIRA: MATH-727

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1215524 13f79535-47bb-0310-9956-ffa450edef68

74e00296574dc3ac0bc064fc3258faabaf732d6c
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c23859f0172edba1ff75577d0ad98e3fb41aa6d4
1323978462
Sebastien Brisard
Further alterations to javadoc (MATH-677).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1214932 13f79535-47bb-0310-9956-ffa450edef68

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6c96efc2b99b98420ed409ccedd2f92215aa143d
1323839161
Sebastien Brisard
Alterations to the javadoc (MATH-677).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1214057 13f79535-47bb-0310-9956-ffa450edef68

6c96efc2b99b98420ed409ccedd2f92215aa143d
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790c9567c16ee96b0cbf3c06f563be5fafcae4f7
1323762292
Sebastien Brisard
Correction to the javadoc of distribution.FastCosineTransformer (MATH-677).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1213585 13f79535-47bb-0310-9956-ffa450edef68

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b423ba62d52b57b290838acd0309d0d42eb87cf7
1323761697
Sebastien Brisard
Clarified the javadoc of distribution.FastCosineTransformer (MATH-677).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1213584 13f79535-47bb-0310-9956-ffa450edef68

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f8160b492a15067239220b5f42a25743f498bfeb
1323674363
Sebastien Brisard
In transform.FastSineTransformer, replaced the pair transform2() / inverseTransform2() with two factory methods: create() and createOrthogonal() (MATH-677).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1213157 13f79535-47bb-0310-9956-ffa450edef68

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917690c6a19f5eef26218321c839623de49818be
1323673409
Sebastien Brisard
Made constructor of transform.FastCosineTransformer private, as factory methods create() and createOrthogonal() should be preferred (MATH-677).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1213154 13f79535-47bb-0310-9956-ffa450edef68

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01f68f2a66ccd1d694301ba804c443a2db87f42c
1323672544
Sebastien Brisard
Improvements to the Javadoc of transform.FastCosineTransformer (MATH-677).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1213152 13f79535-47bb-0310-9956-ffa450edef68

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1323672382
Sebastien Brisard
Improvements to the Javadoc of transform.RealTransformer (MATH-677).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1213151 13f79535-47bb-0310-9956-ffa450edef68

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47404f6f6e9f38f6e84097b6b0e860484301203b
1323653474
Phil Steitz
Made RandomDataImpl consistently use a Well generator as the default random generator. This completes the fix for JIRA: MATH-701.  The inconsistency was reported by Dennis Hendricks in JIRA: MATH-720.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1213130 13f79535-47bb-0310-9956-ffa450edef68

47404f6f6e9f38f6e84097b6b0e860484301203b
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bb4bd7481c7592cf1c5044dedbda71469f4f276e
1323640730
Phil Steitz
Made ISAACRandom clear its normal deviate cache on reseed. JIRA: MATH-723.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1213087 13f79535-47bb-0310-9956-ffa450edef68

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b39e2d0fe3da5429c555ea1423ff41dc6a12d61a
1323639217
Phil Steitz
Modified setSeed methods in Bitstream generators (MersenneTwister and Well
generators) to clear the cache of normal deviates used by nextGaussian.

JIRA: MATH-723


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1213081 13f79535-47bb-0310-9956-ffa450edef68

b39e2d0fe3da5429c555ea1423ff41dc6a12d61a
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660821d1758a0bc7eabfd80b6e5528a579a01949
1323435611
Gilles Sadowski
MATH-707
Class name change:
  "AbstractUnivariateRealOptimizer" -> "BaseAbstractUnivariateOptimizer"
  "MultiStartUnivariateRealOptimizer" -> "UnivariateMultiStartOptimizer"
  "BaseUnivariateRealOptimizer" -> "BaseUnivariateOptimizer"


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1212385 13f79535-47bb-0310-9956-ffa450edef68

660821d1758a0bc7eabfd80b6e5528a579a01949
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3d67eb0485d141cde38b6ce69bcde889dd0acdb7
1323434570
Gilles Sadowski
MATH-707
Class name change:
  "MultivariateRealOptimizer" -> "MultivariateOptimizer"
  "DifferentiableMultivariateRealOptimizer" -> "DifferentiableMultivariateOptimizer"


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1212377 13f79535-47bb-0310-9956-ffa450edef68

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153505b062ecfb4d106e4079c544c12fb112b913
1323434137
Gilles Sadowski
MATH-707
Class name change:
  "BaseMultivariateRealOptimizer" -> "BaseMultivariateOptimizer"


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1212373 13f79535-47bb-0310-9956-ffa450edef68

153505b062ecfb4d106e4079c544c12fb112b913
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843f20d9f8ede125d080060c9ae51e052dab1e9f
1323433708
Gilles Sadowski
MATH-707
Class name change:
  "BaseAbstractVectorialOptimizer" -> "BaseAbstractMultivariateVectorOptimizer"


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1212371 13f79535-47bb-0310-9956-ffa450edef68

843f20d9f8ede125d080060c9ae51e052dab1e9f
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5ef7821b1cda166aee88071f7a9356584d167c57
1323433330
Gilles Sadowski
MATH-707
Class name change:
  "MultiStartDifferentiableMultivariateVectorialOptimizer" -> "DifferentiableMultivariateVectorMultiStartOptimizer"
  "DifferentiableMultivariateVectorialOptimizer" -> "DifferentiableMultivariateVectorOptimizer"
  "BaseMultiStartMultivariateVectorialOptimizer" -> "BaseMultivariateVectorMultiStartOptimizer"
  "BaseMultivariateVectorialOptimizer" -> "BaseMultivariateVectorOptimizer"


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1212361 13f79535-47bb-0310-9956-ffa450edef68

5ef7821b1cda166aee88071f7a9356584d167c57
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ab5aadd5141bca5296a07f9a037e1e5886c93c6f
1323431963
Gilles Sadowski
MATH-707
Class name change:
  "MultiStartMultivariateRealOptimizer" -> "MultivariateMultiStartOptimizer"
  "BaseMultiStartMultivariateRealOptimizer" -> "BaseMultivariateMultiStartOptimizer"
  "MultiStartDifferentiableMultivariateRealOptimizer" -> "DifferentiableMultivariateMultiStartOptimizer"


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1212344 13f79535-47bb-0310-9956-ffa450edef68

ab5aadd5141bca5296a07f9a037e1e5886c93c6f
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18823c8809d03d49ae7f1b77d4eb368fbeabc121
1323430360
Gilles Sadowski
MATH-707
Class name change:
  "BaseAbstractSimpleBoundsScalarOptimizer" -> "BaseAbstractMultivariateSimpleBoundsOptimizer"
  "BaseSimpleBoundsMultivariateRealOptimizer" -> "BaseMultivariateSimpleBoundsOptimizer"


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1212336 13f79535-47bb-0310-9956-ffa450edef68

18823c8809d03d49ae7f1b77d4eb368fbeabc121
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4c27ae2ffe8f4bf7cd5d850035f78b58cac4abcb
1323429246
Gilles Sadowski
MATH-707
Class name change:
  "BaseAbstractScalarOptimizer" -> "BaseAbstractMultivariateOptimizer"


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1212332 13f79535-47bb-0310-9956-ffa450edef68

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814d15af44642e09a1c37ac66d4f172949abf674
1323413243
Sebastien Brisard
In distribution.FastCosineTransformer, replaced the pair transform2() / inverseTransform2() with two factory methods: create() and createOrthogonal() (MATH-677).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1212262 13f79535-47bb-0310-9956-ffa450edef68

814d15af44642e09a1c37ac66d4f172949abf674
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985c3c5426620775ecdbe0bf4e0ca5938117f150
1323413109
Sebastien Brisard
Cosmetic changes to transform.FastFourierTransformer (MATH-677).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1212260 13f79535-47bb-0310-9956-ffa450edef68

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b6539598d62e4d338c61fa3fda356c61cd5cd764
1323243562
Sebastien Brisard
Forgot to commit updated unit tests in rev 1211318 (MATH-677).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1211319 13f79535-47bb-0310-9956-ffa450edef68

b6539598d62e4d338c61fa3fda356c61cd5cd764
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6a4d871e5b30643cf809200a0e07f4b9e9bf1cbf
1323243309
Sebastien Brisard
In package transform, replaced FastFourierTransformer.transform2 and FastFourierTransformer.inverseTransform2 with a combination of transform()/inverseTransform(), combined with appropriate factory methods (MATH-677).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1211318 13f79535-47bb-0310-9956-ffa450edef68

6a4d871e5b30643cf809200a0e07f4b9e9bf1cbf
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bab8c17720d83dee4e79bc591483fdaf1d29fc95
1323140266
Sebastien Brisard
In distribution.AbstractRealDistribution.inverseCumulativeProbability(double), boundary cases (p == 0 and p == 1) are now handled correctly: concrete instances no longer need to override this method, which is removed (MATH-699).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1210756 13f79535-47bb-0310-9956-ffa450edef68

bab8c17720d83dee4e79bc591483fdaf1d29fc95
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68d2ef89ad7e959656e3e673d0731c2a3e3bf147
1323075674
Sebastien Brisard
- Corrected unit test (MATH-715).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1210365 13f79535-47bb-0310-9956-ffa450edef68

68d2ef89ad7e959656e3e673d0731c2a3e3bf147
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377990836d633f7ec9837b5c6b75efbce549ca68
1323072938
Sebastien Brisard
- Corrected expressions for mean and variance in distribution.PascalDistribution (MATH-715).
- Made javadoc more explicit
- Restored SVN properties to various files in package distribution.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1210359 13f79535-47bb-0310-9956-ffa450edef68

377990836d633f7ec9837b5c6b75efbce549ca68
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af3fffb74b6e2e35548a9519732077652fe89bb4
1322936582
Sebastien Brisard
- In distribution.AbstractRealDistribution, removed superfluous methods getDomainLowerBound(double), getDomainUpperBound(double) and getInitialDomain(double p) (MATH-699).
- Resolved checkstyle issues in the distribution package.
- Improved Javadoc of RealDistribution.getSupportLowerBound(), RealDistribution.getSupportUpperBound() and AbstractRealDistribution.inverseCumulativeDistribution(double).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1209963 13f79535-47bb-0310-9956-ffa450edef68

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1ae0a97fb9bc80229d7777dd4a8b33067bacd7e6
1322929495
Sebastien Brisard
New implementation of AbstractRealDistribution.inverseCumulativeProbability(double). Solves MATH-699, and leads to slightly smaller execution times.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1209942 13f79535-47bb-0310-9956-ffa450edef68

1ae0a97fb9bc80229d7777dd4a8b33067bacd7e6
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b7c6f9c6616bf63d910b00796169b288c0af1b42
1322893039
Sebastien Brisard
Patch contributed by Christian Winter (MATH-703).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1209836 13f79535-47bb-0310-9956-ffa450edef68

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c8becc7c47963bcdc1578298846ad6fbf08f64ef
1322781876
Luc Maisonobe
Fixed bracketing interval balancing in BracketingNthOrderBrentSolver.

Jira: MATH-716

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1209307 13f79535-47bb-0310-9956-ffa450edef68

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1322774447
Luc Maisonobe
Removed remnants of junit 3.

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1322767271
Luc Maisonobe
Updated patch from original contributor.

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ecf5f299340c446bebcf7473cce31ff757f2c797
1322753119
Gilles Sadowski
Added a few unit tests.


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3f3f515b3775675e1bd8b606d4154fa630292b2f
1322752970
Gilles Sadowski
MATH-690
[I forgot to commit those modified tests as part of r1209100.]


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783ab0a6182647519266bd766269eb93c1567bd1
1322750740
Gilles Sadowski
Release doc update.
(MATH-689 resolved with the help of Sébastien Brisard).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1209108 13f79535-47bb-0310-9956-ffa450edef68

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1322750210
Gilles Sadowski
Removed unnecessary call to base class' default constructor.


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1322749320
Gilles Sadowski
MATH-690
Removed "sign" methods.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1209100 13f79535-47bb-0310-9956-ffa450edef68

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36f18cdd6713ee09295895a4a1d4cc8ab4a87506
1322747704
Gilles Sadowski
MATH-690
Replaced "sign" with "copySign".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1209082 13f79535-47bb-0310-9956-ffa450edef68

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1322747608
Gilles Sadowski
Javadoc cleanup.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1209080 13f79535-47bb-0310-9956-ffa450edef68

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d8153cbad21884aca984405b75502fce233b6d8a
1322725383
Sebastien Brisard
Improved (?) javadoc (MATH-677).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1208986 13f79535-47bb-0310-9956-ffa450edef68

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1322713669
Sebastien Brisard
Formatting (MATH-677).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1208949 13f79535-47bb-0310-9956-ffa450edef68

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Sebastien Brisard
Formatting (MATH-677).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1208945 13f79535-47bb-0310-9956-ffa450edef68

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1322711073
Sebastien Brisard
Formatting (MATH-677).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1208944 13f79535-47bb-0310-9956-ffa450edef68

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b43e6a00a979edd719898cedc2beb3c5fee88a8a
1322710765
Sebastien Brisard
Formatting (MATH-677).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1208943 13f79535-47bb-0310-9956-ffa450edef68

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Sebastien Brisard
Formatting (MATH-677).

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4843259cfaa61a2b0c8f7b7eaf787e66fef4b111
1322637748
Sebastien Brisard
Formatting (MATH-677).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1208309 13f79535-47bb-0310-9956-ffa450edef68

4843259cfaa61a2b0c8f7b7eaf787e66fef4b111
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1322635430
Sebastien Brisard
Formatting (MATH-677).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1208295 13f79535-47bb-0310-9956-ffa450edef68

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a0c14c5f8962d5cd71f496eb033f67e9c777bab8
1322634837
Sebastien Brisard
Corrected to camelCase some method names (MATH-677).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1208293 13f79535-47bb-0310-9956-ffa450edef68

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882556eabbeb2f62939aee29afdec2a01ce4bbe1
1322634244
Phil Steitz
Fixed array indexing error in Variance evaluate method for
computing the weighted variance of an array segment.

JIRA: MATH-704
Reported by Leonid Ilyevsky
Patched by Thomas Niedhart



git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1208291 13f79535-47bb-0310-9956-ffa450edef68

882556eabbeb2f62939aee29afdec2a01ce4bbe1
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91e6ac584320681913de4a71a4e8d9f837e099b4
1322595412
Luc Maisonobe
Updated tests and documentation for Kalman filter.

Patch provided by Thomas Neidhart.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1208043 13f79535-47bb-0310-9956-ffa450edef68

91e6ac584320681913de4a71a4e8d9f837e099b4
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bfd118d14d97383f36805beb7561f8bc3cb849db
1322595340
Luc Maisonobe
Fixed ignored scale in penalty function adapter for direct optimizers.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1208041 13f79535-47bb-0310-9956-ffa450edef68

bfd118d14d97383f36805beb7561f8bc3cb849db
:100644 100644 5169481955c0b1677e3f055e60a49a3d9122e0bf 94be711229915b8a5532fb235162e43a6346be97 M	src/main/java/org/apache/commons/math/optimization/direct/MultivariateFunctionPenaltyAdapter.java

134a2b8464d0c1c2471f71a9db4974550721e125
1322520694
Gilles Sadowski
MATH-707
Changed "...UnivariateVectorialFunction" to "...UnivariateVectorFunction"
(as suggested by Ted Dunning).



git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1207675 13f79535-47bb-0310-9956-ffa450edef68

134a2b8464d0c1c2471f71a9db4974550721e125
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:100644 000000 ece1663fb29839034857ce88271e45c2f816963c 0000000000000000000000000000000000000000 D	src/main/java/org/apache/commons/math/analysis/UnivariateVectorialFunction.java

cef8d30a2148948f9df5c6cff075ba8bb20ddced
1322520101
Gilles Sadowski
MATH-707
Changed "...MultivariateVectorialFunction" to "...MultivariateVectorFunction"
(as suggested by Ted Dunning).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1207671 13f79535-47bb-0310-9956-ffa450edef68

cef8d30a2148948f9df5c6cff075ba8bb20ddced
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e98a5000cd211539bf4ba65f62cc7f81395e1726
1322511388
Luc Maisonobe
Fixed case of unconstrained variables that still occur in the objective
function in simplex solver.

Patch provided by Thomas Neidhart

Jira: MATH-713

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1207566 13f79535-47bb-0310-9956-ffa450edef68

e98a5000cd211539bf4ba65f62cc7f81395e1726
:100644 100644 fd8943203e3284cab50a76361401906125584967 d96c9167b53c99b04af8074a28f8897a3db24c0b M	src/main/java/org/apache/commons/math/optimization/linear/SimplexTableau.java
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800943ecf2e3ecf9258d8fdf8052e9273b816a97
1322510414
Luc Maisonobe
Added fast cryptographically secure pseudorandom number generator ISAAC.

Patch provided by Eldar Agalarov.

JIRA: MATH-710

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1207554 13f79535-47bb-0310-9956-ffa450edef68

800943ecf2e3ecf9258d8fdf8052e9273b816a97
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e579c212f733405d698b624c0ffd300f6cc0035d
1322477790
Luc Maisonobe
Added the initi method also to FixedStepHandler.

Jira: MATH-714

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1207066 13f79535-47bb-0310-9956-ffa450edef68

e579c212f733405d698b624c0ffd300f6cc0035d
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:100644 100644 9aa0a59543a2d11eb935a7e44b73e34202d1d630 f753689e1ed4d306c1067cedf0d6cf88458c6a14 M	src/main/java/org/apache/commons/math/ode/sampling/StepNormalizer.java
:100644 100644 e904a1542046c9045116d210bcd0460cd1666020 a2eff35cf815bd72d72c67141aa6d9586438b05d M	src/test/java/org/apache/commons/math/ode/sampling/StepNormalizerOutputTestBase.java
:100644 100644 c7f411841e28c3f71479e0be5065413cab1ed2a9 ff6675a259bf44549e19ff9ea02a129fa3c5b269 M	src/test/java/org/apache/commons/math/ode/sampling/StepNormalizerTest.java

ba6f30842261c030087a24feddd9b1247a18aef3
1322475651
Luc Maisonobe
Added init methods to StepHandler and EventHandler interfaces.

The reset method in StepHandler interface has been renamed init and is
provided more information on the integration by the calling integrator.
A similar init method has been added to the EventHandler interface.

Jira: MATH-714

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1207054 13f79535-47bb-0310-9956-ffa450edef68

ba6f30842261c030087a24feddd9b1247a18aef3
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:100644 100644 d88609cb120f4139785ae9a0dbf10bc579d028a8 a46a6da2f9e0993e2897ea452bec911c8119d3cf M	src/test/java/org/apache/commons/math/ode/nonstiff/ThreeEighthesIntegratorTest.java
:100644 100644 10cfa6e02939f90b39d911a6138f2737e37c984a 206f790a765b04e8bbd7155807ff4f42e7486e1e M	src/test/java/org/apache/commons/math/ode/sampling/StepInterpolatorTestUtils.java

f3f6438ede479a3b2ba65563507f0d6e97989956
1322433594
Gilles Sadowski
MATH-707
Changed "...MultivariateRealFunction" to "...MultivariateFunction".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1206889 13f79535-47bb-0310-9956-ffa450edef68

f3f6438ede479a3b2ba65563507f0d6e97989956
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beb4b5efc2e68bbc06b59a2eb48250bb09056e51
1322432310
Gilles Sadowski
MATH-707
Changed "...UnivariateRealFunction" to "...UnivariateFunction".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1206867 13f79535-47bb-0310-9956-ffa450edef68

beb4b5efc2e68bbc06b59a2eb48250bb09056e51
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612623887e878c0c97bc8f1c9dc150d246249cea
1322428874
Phil Steitz
Minor edit to description of MATH-649; made it an update, not a fix.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1206845 13f79535-47bb-0310-9956-ffa450edef68

612623887e878c0c97bc8f1c9dc150d246249cea
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e98ce060fc9561fef321caa64f40224c0305bd11
1322426116
Phil Steitz
Javadoc, test improvements, user guide update.  JIRA: MATH-649.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1206838 13f79535-47bb-0310-9956-ffa450edef68

e98ce060fc9561fef321caa64f40224c0305bd11
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dcffd631675238b4afa04f41a5ff876c25ab5497
1322424935
Luc Maisonobe
Improved documentation about function adapters for optimizers.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1206821 13f79535-47bb-0310-9956-ffa450edef68

dcffd631675238b4afa04f41a5ff876c25ab5497
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f859fccb793f56d1c70a8bc66d6da09ebc889c77
1322424014
Luc Maisonobe
Removed spurious false comment.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1206818 13f79535-47bb-0310-9956-ffa450edef68

f859fccb793f56d1c70a8bc66d6da09ebc889c77
:100644 100644 e8336a5865dce7e40694a9e752906db5d0716b9d 928df6a422ebad20ff678195ab497536e134e589 M	src/main/java/org/apache/commons/math/optimization/direct/MultivariateRealFunctionMappingAdapter.java

7841eeef9bcbcc2d8c5cbc9d2c9adcd13a693241
1322404320
Luc Maisonobe
Improved accuracy of Runge-Kutta based step interpolators near step
start.

JIRA: MATH-705

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1206723 13f79535-47bb-0310-9956-ffa450edef68

7841eeef9bcbcc2d8c5cbc9d2c9adcd13a693241
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dd8da3428be2c4fde85ab27931a30cffacfd397d
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Phil Steitz
Restored 1.5 compatatibility. Thanks, Gump.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1206672 13f79535-47bb-0310-9956-ffa450edef68

dd8da3428be2c4fde85ab27931a30cffacfd397d
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Phil Steitz
Added test to verify that all statistics evaluate on array segments correctly.  JIRA: MATH-704.

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dcae84b2e8f025e93340307d8bc04d406202c323
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Phil Steitz
Fixed errors in SummaryStatistics causing overriden statistics not to be updated if the supplied impls are commons-math classes.  JIRA: MATH-691.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1206666 13f79535-47bb-0310-9956-ffa450edef68

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Phil Steitz
Corrected changelog.

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Phil Steitz
Made moment statistics package scope. JIRA: MATH-694.

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Sebastian Bazley
Unnecessary casts (parameters already of correct type)

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Sebastian Bazley
Unused imports

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Sebastian Bazley
Javadoc fixes

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Sebastian Bazley
Javadoc syntax

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1206651 13f79535-47bb-0310-9956-ffa450edef68

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Phil Steitz
Eliminated deprecated exception.

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Phil Steitz
Eliminated deprecated exception.

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fa457c0415a5b83dbd22a73ec4e11e021d94400d
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Phil Steitz
Fixed example to work after impl/interface merge. Fixed a typo. JIRA: MATH-711.

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Phil Steitz
Completed implementation of sample variance support in statistical aggregates. JIRA: MATH-693.

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Phil Steitz
Keep math-supplied statistics tied to their internal moments.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1206477 13f79535-47bb-0310-9956-ffa450edef68

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013fe63807ac4066d0f6e2cfc552c979cde16945
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Phil Steitz
Added populationVariance method. JIRA: MATH-693.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1206475 13f79535-47bb-0310-9956-ffa450edef68

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962e7803445b5a2d7c1791f8b4aadf5b6b0771e4
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Phil Steitz
Javadoc only. Clarified how increment works with an external second moment.

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Sebastien Brisard
Merged ZipfDistribution and ZipfDistributionImpl (MATH-711).

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Sebastien Brisard
Merged PoissonDistribution and PoissonDistributionImpl (MATH-711).
Merged TDistribution and TDistributionImpl (MATH-711).
Merged WeibullDistribution and WeibullDistributionImpl (MATH-711).

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Gilles Sadowski
Javadoc.


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1322304806
Sebastien Brisard
Merged KolmogorovSmirnovDistribution and KolmogorovSmirnovDistributionImpl (MATH-711).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1206425 13f79535-47bb-0310-9956-ffa450edef68

f2b4d167107e12aef2234a9c2c030f2bea25ddaa
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2052f37c16df13b85c7f2b807e3074a95149abd0
1322302669
Sebastien Brisard
Merged NormalDistribution and NormalDistributionImpl (MATH-711).
Merged PascalDistribution and PascalDistributionImpl (MATH-711).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1206421 13f79535-47bb-0310-9956-ffa450edef68

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:100644 100644 06c3a5a37496f6667a0fabc04b4f2565a00ff397 8a02d589f6a15962cd93fc605743c310751e985e M	src/test/java/org/apache/commons/math/distribution/CauchyDistributionTest.java
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b3cbb097ddd902b5d980cdab46b7e0dba10975b6
1322292326
Sebastien Brisard
Merged HypergeometricDistribution and HypergeometricDistributionImpl (MATH-711).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1206406 13f79535-47bb-0310-9956-ffa450edef68

b3cbb097ddd902b5d980cdab46b7e0dba10975b6
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:100644 000000 27bb696f2899a42d0a9a2fea6e8495a1b4789fa9 0000000000000000000000000000000000000000 D	src/main/java/org/apache/commons/math/distribution/HypergeometricDistributionImpl.java
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:100644 100644 7894dc0b594a9cb648876254514e7e946acb54d3 7fea4bc0641c3b171e7c94e82c441c762ddd9daa M	src/test/java/org/apache/commons/math/distribution/HypergeometricDistributionTest.java
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c6b4fef596941aeba3d9318fbeb79c831cbe580e
1322288269
Sebastien Brisard
- Merged ExponentialDistribution and ExponentialDistributionImpl (MATH-711).
- Merged FDistribution and FDistributionImpl (MATH-711).
- Merged GammaDistribution and GammaDistributionImpl (MATH-711).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1206399 13f79535-47bb-0310-9956-ffa450edef68

c6b4fef596941aeba3d9318fbeb79c831cbe580e
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:100644 100644 6f35ad83252c4a4153c0398336cc510e07cabdfb d60a9bf04f0a4166554b78154b3cc9274136497c M	src/test/java/org/apache/commons/math/distribution/FDistributionTest.java
:100644 100644 f2ba4c1b8e4380c51f790ae98d8b8c1c3d4172bb e38d1073f07c442f134b16bf8e34137e05f62a33 M	src/test/java/org/apache/commons/math/distribution/GammaDistributionTest.java
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d3bb6ed8c136308643e428bb4c2892a1df061c21
1322244141
Gilles Sadowski
MATH-689
Implemented "copySign" for integral types. Removed redundant "indicator"
functions.
Moved "indicator" tests (for floating point arguments) to "FastMathTest",
as the corresponding "copySign" methods are in "FastMath".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1206274 13f79535-47bb-0310-9956-ffa450edef68

d3bb6ed8c136308643e428bb4c2892a1df061c21
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:100644 100644 be10a7cb46919755d9d9b1e9231cdc5ec5c9dcd1 24117fed1ecd1afb3a42af210cf9e86d8f78ad82 M	src/main/java/org/apache/commons/math/util/MathUtils.java
:100644 100644 a088cfd29fa8cc4c46a034838a3c91575b0fea34 b16f0835cbb92f5017c7ca68cf6a0465ea5e0c5c M	src/test/java/org/apache/commons/math/util/FastMathTest.java
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4d81fcce23fdaaa728fba7f118c3e1ce716954c0
1322232534
Gilles Sadowski
MATH-689
Moved "pow" (integer arguments) to "ArithmeticUtils".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1206199 13f79535-47bb-0310-9956-ffa450edef68

4d81fcce23fdaaa728fba7f118c3e1ce716954c0
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:100644 100644 1ac7e7bb288717cdf48b49cb399999b024e37720 3a86997a2f7c4fa6e1d7a85de4c6ca1d8cb64eab M	src/test/java/org/apache/commons/math/util/ArithmeticUtilsTest.java
:100644 100644 b3ad4044c6a4b109510ebf04d1d3e03d3780c665 effe84b80516bb2aab217ac1e463e4d88db7466b M	src/test/java/org/apache/commons/math/util/MathUtilsTest.java

7ff8ef3b47ef9b3fee8e860ca45c3633ea434aa1
1322202021
Sebastien Brisard
Renamed ChiSquareDistributionTest to ChiSquaredDistributionTest for consistency with the name of the actual class being tested.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1206062 13f79535-47bb-0310-9956-ffa450edef68

7ff8ef3b47ef9b3fee8e860ca45c3633ea434aa1
:100644 000000 ea9f8df6dc9cdb298d458250acf9cd655c4dea40 0000000000000000000000000000000000000000 D	src/test/java/org/apache/commons/math/distribution/ChiSquareDistributionTest.java
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7fe539d9a17f79d558e11fb4288a33bb54996dd8
1322198216
Sebastien Brisard
Merged ChiSquaredDistribution and ChiSquaredDistributionImpl (MATH-711).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1206060 13f79535-47bb-0310-9956-ffa450edef68

7fe539d9a17f79d558e11fb4288a33bb54996dd8
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2164e7e472099ad4ed6f3cc71bbf72cc67602c03
1322194145
Sebastien Brisard
Merged CauchyDistribution and CauchyDistributionImpl (MATH-711).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1206053 13f79535-47bb-0310-9956-ffa450edef68

2164e7e472099ad4ed6f3cc71bbf72cc67602c03
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:100644 000000 3a5c3399fc35e32c85238b0db95c0ea823dd8fb7 0000000000000000000000000000000000000000 D	src/main/java/org/apache/commons/math/distribution/CauchyDistributionImpl.java
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dae607eb6a39bd6ffa4e2456e1020843eaed77b8
1322163454
Sebastien Brisard
Merged BinomialDistribution and BinomialDistributionImpl (MATH-711).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1205963 13f79535-47bb-0310-9956-ffa450edef68

dae607eb6a39bd6ffa4e2456e1020843eaed77b8
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:100644 000000 7364b4cc0055409774d167f5e05e32d6f73efd7a 0000000000000000000000000000000000000000 D	src/main/java/org/apache/commons/math/distribution/BinomialDistributionImpl.java
:100644 100644 33165036f1e24f8dcdb378e9937aea7b5986651f 95f9e8bb6fb7a765afd15bfb08d9cb032011fe67 M	src/main/java/org/apache/commons/math/random/RandomDataImpl.java
:100644 100644 a846d43946d8df479a270fbc38c80e5cca0d91b0 408559ec6f0f91528cd8a293f6c542f98f2ebe9d M	src/test/java/org/apache/commons/math/distribution/BinomialDistributionTest.java
:100644 100644 c522c93f8a27e3695003e237323248f709d5a682 ae24f9805200203204deda96971d52e17696a5f0 M	src/test/java/org/apache/commons/math/random/RandomDataTest.java

b936a4662db01070910353b2f5cc5cc9e0052eb6
1322118452
Sebastien Brisard
Merged BetaDistribution and BetaDistributionImpl (MATH-711).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1205739 13f79535-47bb-0310-9956-ffa450edef68

b936a4662db01070910353b2f5cc5cc9e0052eb6
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:100644 000000 a6ab9dd2b9103c0391ef97358b7c02c63deb1cf0 0000000000000000000000000000000000000000 D	src/main/java/org/apache/commons/math/distribution/BetaDistributionImpl.java
:100644 100644 60c450e7f82a3fe7502936c0daae425d7567e059 33165036f1e24f8dcdb378e9937aea7b5986651f M	src/main/java/org/apache/commons/math/random/RandomDataImpl.java
:100644 100644 f4f9d38149a6f1911f952fc06000364c80a21365 2db1dbc4a312573203200ba1fa73f57e61ca28bb M	src/test/java/org/apache/commons/math/distribution/BetaDistributionTest.java
:100644 100644 01e845bb9f3a87aad707ec336e2961f3d5ad3405 c522c93f8a27e3695003e237323248f709d5a682 M	src/test/java/org/apache/commons/math/random/RandomDataTest.java

384ccda58aeb2c3f825e78fc3fe61bd837940cb3
1321825306
Luc Maisonobe
Improved Dormand-Prince 8(5,3) step interpolator accuracy at step start.

The previous step is preserved and if interpolation time is in the first
half ot the step, then interpolation is based on step start, otherwise
is it based on step end. Previously, interpolation was always performed
with respect to step end.

If this trick proves useful, it will be extended to other Runge-Kutta
type step interpolators.

JIRA: MATH-705

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1204270 13f79535-47bb-0310-9956-ffa450edef68

384ccda58aeb2c3f825e78fc3fe61bd837940cb3
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:000000 100644 0000000000000000000000000000000000000000 239854a92f22a6ff8add8f81216cf86cc172ab05 A	src/test/java/org/apache/commons/math/ode/events/ReappearingEventTest.java
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8be749d29037ff597e76e0d0beb8a721f1ca9be5
1321825243
Luc Maisonobe
typo

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1204269 13f79535-47bb-0310-9956-ffa450edef68

8be749d29037ff597e76e0d0beb8a721f1ca9be5
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3f9e7a94bdb730f4484e9084753d0ec3e0c230bd
1321628516
Luc Maisonobe
Fixed wrong unicode character.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1203682 13f79535-47bb-0310-9956-ffa450edef68

3f9e7a94bdb730f4484e9084753d0ec3e0c230bd
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c263976f221d9b8aabb712f6c2b729ef19abead0
1321602132
Luc Maisonobe
Fixed BigFraction percentage method which did not work at all.

JIRA: MATH-709

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1203516 13f79535-47bb-0310-9956-ffa450edef68

c263976f221d9b8aabb712f6c2b729ef19abead0
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a4a9dbb5d12b4264de88b929202627097f55872a
1321540390
Gilles Sadowski
MATH-708.
New utility method.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1203205 13f79535-47bb-0310-9956-ffa450edef68

a4a9dbb5d12b4264de88b929202627097f55872a
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942f37bddec5262998d2143908e9fd3bc836afb9
1321485007
Gilles Sadowski
Javadoc.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1202926 13f79535-47bb-0310-9956-ffa450edef68

942f37bddec5262998d2143908e9fd3bc836afb9
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67c628a1d6c406a38eaa89bde2485454e35110a3
1321484734
Gilles Sadowski
Character encoding.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1202922 13f79535-47bb-0310-9956-ffa450edef68

67c628a1d6c406a38eaa89bde2485454e35110a3
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273ca6ba82bff566d5b194052fcacc5f09f4914b
1321458321
Gilles Sadowski
Character encoding.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1202746 13f79535-47bb-0310-9956-ffa450edef68

273ca6ba82bff566d5b194052fcacc5f09f4914b
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4e340f734d9c397119e68cc156051701976131ca
1321364145
Gilles Sadowski
MATH-697
Added missing constructors.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1202186 13f79535-47bb-0310-9956-ffa450edef68

4e340f734d9c397119e68cc156051701976131ca
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8c2d5d1f491fe3a1d696bce6efae1543f1d58a48
1321357645
Gilles Sadowski
MATH-697
New interface and abstract base class for separate support of unconstrained
and simple bounds constraints optimizers.


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73d32c1fd118f14d5d76423a8df9f8e076688f27
1321054774
Luc Maisonobe
Fixed a bad interaction between step handlers and event handlers in ODE
integrators.

The problem was due to an internal array from the step interpolator that
was changed by the step handlers. These array was expected to contain
the state at event time, but was overridden later on. the solution is
simply to clone the array. Note that the fact the array is reused *is*
documented in the javadoc and is a feature of the interpolators ...

JIRA: MATH-706

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1201105 13f79535-47bb-0310-9956-ffa450edef68

73d32c1fd118f14d5d76423a8df9f8e076688f27
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f6d4c8cfaad3711348304c0b3d2901b31ed635ae
1320959035
Luc Maisonobe
Added array constructor and getter for Vector2D and Vector3D.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1200546 13f79535-47bb-0310-9956-ffa450edef68

f6d4c8cfaad3711348304c0b3d2901b31ed635ae
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88c4506b6ead363262cb80b98cdf757c028ba14e
1320958974
Luc Maisonobe
Added applyTo and applyInverseTo methods in the Rotation class that
handle directly arrays instead of Vector3D instances.

Patch provided by Jan Kotek.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1200545 13f79535-47bb-0310-9956-ffa450edef68

88c4506b6ead363262cb80b98cdf757c028ba14e
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061a4def71a4b3fcbbda3763c4ab67055da9bc8a
1320955735
Luc Maisonobe
Added adapters for simple bounds constraints optimization.

The adapters are useful only for optimizers that do not support simple
bounds constraints by themselves (i.e. Nelder-Mead and Torczon's
multidirectional). Two adapters are available, one performs a mapping
between the whole real range and the bounded range (bounds being set
component wise), and one uses a penalty function. 

JIRA: MATH-196

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1200516 13f79535-47bb-0310-9956-ffa450edef68

061a4def71a4b3fcbbda3763c4ab67055da9bc8a
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0454f76fec669f3b9d5f283dac7d17b58631cd04
1320944751
Sebastian Bazley
Simpify exception checking:
- use expected @Test attribute
- don't catch and rethrow

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1200430 13f79535-47bb-0310-9956-ffa450edef68

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ed8164e29fdd8d791f3e1d762971780bfcddfa3c
1320940487
Sebastian Bazley
Need to fail if the exception is not generated

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1200394 13f79535-47bb-0310-9956-ffa450edef68

ed8164e29fdd8d791f3e1d762971780bfcddfa3c
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73a1cbc72278817d07f6170f983962df82753d23
1320940350
Sebastian Bazley
Unused

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1320940043
Sebastian Bazley
Javadoc

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7a37b003ef84b6ba48a76815bef0059efc3f553f
1320939782
Sebastian Bazley
Unnecessary casts; document unused field

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e70944b685745ca1843b3f5080886e9ec091c9f2
1320937667
Sebastian Bazley
Use asserNotNull(var) instead of if (var != null) and avoid subsequent NPE warnings

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b56063bc485d39c87950604b33c76cca5c8455e1
1320937292
Sebastian Bazley
Use asserNotNull(var) instead of assertTrue(var != null) and avoid subsequent NPE warnings

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393b131028e177c9128244f9cec8d5414b6a4d67
1320937137
Sebastian Bazley
Javadoc

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3e3fec501b0216b6c2859af588cc8316617aab29
1320936860
Sebastian Bazley
Unused

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1320936427
Sebastian Bazley
Add missing serialVersionUId

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1320936224
Sebastian Bazley
Unnecessary casts - angbd is double, so ensures the rest of the calculation uses double

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Sebastien Brisard
Removed illegal @Override.

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Sebastien Brisard
Modifications to the hierarchy of distributions, according to MATH-692. Patch contributed by Christian Winter.

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1320688063
Luc Maisonobe
Added a way for user to define tune convergence checking in CMA-ES.

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Luc Maisonobe
Make CMA-ES input sigma is now consistent with boundaries units.

JIRA: MATH-702

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Sebastien Brisard
Fixed javadoc.

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Phil Steitz
Widened tolerance in mean test.

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Phil Steitz
Added Sébastien, fixed alpha sort of developers list.

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Phil Steitz
Added stable random generator based on Chambers-Mallows-Stuck method.  Contributed by Pavel Ryhzov.  JIRA: MATH-462.

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Phil Steitz
Space police.

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Phil Steitz
Javadoc improvements.

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Phil Steitz
Changed default seeding for MersenneTwister, WELL generators to add system identity hash code.  JIRA: MATH-701.

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Phil Steitz
Made use of system identity hashcode explicit in seed computation.  JIRA: MATH-701.

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Phil Steitz
Changed default non-secure generator to Well19937c and changed default seeds to add system identity haschode to timestamp.  JIRA: MATH-701.

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Sebastian Bazley
Unnecessary casts

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Sebastian Bazley
Fix generics

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Sebastian Bazley
Cannot inherit without a parent to inherit from

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Sebastian Bazley
Tidy throws clauses

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Sebastian Bazley
Unused imports

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Sebastian Bazley
Let's not waste semi-colons ...

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Sebastian Bazley
Javadoc

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Sebastian Bazley
Javadoc

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Sebastian Bazley
Unnecessary casts

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Sebastian Bazley
Unnecessary casts

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Sebastian Bazley
Unused imports

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1320400146
Sebastian Bazley
Missing @Override

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1320400107
Sebastian Bazley
Missing @Override

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1320399844
Sebastian Bazley
Missing @Deprecated

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1320324536
Gilles Sadowski
Typo.


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1320292923
Sebastien Brisard
Fixed Javadoc.

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1320235673
Gilles Sadowski
Naming of variable.


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1320226574
Luc Maisonobe
Fixed a typo in variable name leading it to be ignored.

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1319916936
Gilles Sadowski
MATH-698
Bounds passed as arguments in "optimize" method.


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1319913041
Gilles Sadowski
Javadoc.


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cf64a0a1e0343d85c33e6a2fd926527ae85bf8c4
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d11bdd2c610ba3c627487cfb404750acf53cd099
1319887170
Gilles Sadowski
MATH-697
Fixed bug in check that the initial value is within bounds.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1194874 13f79535-47bb-0310-9956-ffa450edef68

d11bdd2c610ba3c627487cfb404750acf53cd099
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1bf4ee0c04235edea27dc7878b6763b9d12834e4
1319846072
Gilles Sadowski
MATH-697
Check that the given starting point is within the bounds.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1190686 13f79535-47bb-0310-9956-ffa450edef68

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249404b376667517c9391ab637be41914c5553cb
1319843578
Gilles Sadowski
MATH-697
Added consistency check on array sizes.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1190665 13f79535-47bb-0310-9956-ffa450edef68

249404b376667517c9391ab637be41914c5553cb
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7e2ded188d8e5ec15868fd91cb934ebc1361dbaa
1319842996
Gilles Sadowski
Javadoc and code formatting.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1190657 13f79535-47bb-0310-9956-ffa450edef68

7e2ded188d8e5ec15868fd91cb934ebc1361dbaa
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217476803ee81e856bef39a475adc4ec08543619
1319834649
Gilles Sadowski
MATH-697
Added "optimize" method to allow passing simple bounds.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1190556 13f79535-47bb-0310-9956-ffa450edef68

217476803ee81e856bef39a475adc4ec08543619
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5f6067b7de28c62f046d69607d374a59bf82473b
1319722448
Gilles Sadowski
MATH-413
Removed "setConvergenceChecker"; convergence checker is passed at construction.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1189750 13f79535-47bb-0310-9956-ffa450edef68

5f6067b7de28c62f046d69607d374a59bf82473b
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644e4d485fbac3c06f92ee674848c954dc89c961
1319709574
Gilles Sadowski
Code formatting.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1189695 13f79535-47bb-0310-9956-ffa450edef68

644e4d485fbac3c06f92ee674848c954dc89c961
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bbde275210895f1988932c4be494548e379f0271
1319709181
Gilles Sadowski
Code and Javadoc formatting.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1189694 13f79535-47bb-0310-9956-ffa450edef68

bbde275210895f1988932c4be494548e379f0271
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d94a128fb39b68b43d8ebd277fd79c1a61984a66
1319685114
Phil Steitz
Moved "SAFE_MIN" and "EPSILON" from "MathUtils" to "Precision."

JIRA: MATH-689
(Committing on behalf of erans)


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1189593 13f79535-47bb-0310-9956-ffa450edef68

d94a128fb39b68b43d8ebd277fd79c1a61984a66
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:100644 100644 8380b134b6917a64cb87f4063286f54b0825c4fa e6d95db60d7c687334527422754d089e7062db61 M	src/test/java/org/apache/commons/math/optimization/general/LevenbergMarquardtOptimizerTest.java
:100644 100644 59ad38501983b3200f94ad136feca7ddfe95f0f3 7a7f89759940288f80dbca5d6ccd4caa9eabe3f2 M	src/test/java/org/apache/commons/math/util/FastMathStrictComparisonTest.java
:100644 100644 4847021e7d0fa84d347b96df056db59d45e69fca a088cfd29fa8cc4c46a034838a3c91575b0fea34 M	src/test/java/org/apache/commons/math/util/FastMathTest.java

20287ec444b53270a54f806195df1834967c6a2b
1319676227
Phil Steitz
Javadoc.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1189563 13f79535-47bb-0310-9956-ffa450edef68

20287ec444b53270a54f806195df1834967c6a2b
:100644 100644 4d8b0bc2b27cb38d30b31b3fc7d0819130760cb7 0b162a6717d1f5ea4af839a389c3eafc4d3bbf73 M	src/main/java/org/apache/commons/math/linear/SingularValueDecomposition.java

b61ea9403c560544e5da8fcf814f22a3b5416c82
1319666703
Phil Steitz
Javadoc.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1189499 13f79535-47bb-0310-9956-ffa450edef68

b61ea9403c560544e5da8fcf814f22a3b5416c82
:100644 100644 bfff93db2019e8647b070d36188ccff32e21140c ab02a6d475c5a7a1ea4525e08d31e80d99866d0e M	src/main/java/org/apache/commons/math/linear/EigenDecomposition.java

53c8cec5ceb4cd81e3f9b8858814accac83a324e
1319620102
Luc Maisonobe
Fixed an event resetting issue in ODE.

When several discrete events occur during the same ODE integration step,
they are handled chronologically or reverse chronologically depending on
the integration direction. If one of the event truncates the step (for
example because its eventOccurred method returns RESET or
RESET_DERIVATIVES for example), the stepAccepted method of the pending
events later in the step were not called. This implied that in the next
step, these events were still referring to data from previous step, they
had lost synchronization with the integrator.

JIRA: MATH-695

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1189086 13f79535-47bb-0310-9956-ffa450edef68

53c8cec5ceb4cd81e3f9b8858814accac83a324e
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:100644 100644 07178e52b7da0a97e17e70c429cd3e4b9a26fe3e 722584b8f874d9711b47ebcacf335ec252167ece M	src/test/java/org/apache/commons/math/ode/events/EventStateTest.java

4d994702cb50c8ad80f4f977292063a118cff724
1319581619
Gilles Sadowski
MATH-689
Method "log(double base, double x)" moved from "MathUtils" to "FastMath".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1188949 13f79535-47bb-0310-9956-ffa450edef68

4d994702cb50c8ad80f4f977292063a118cff724
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f9f0e18a2487c72016dfe2b203b05fe6a925c6dc
1319579835
Gilles Sadowski
MATH-696
Default implementation for "addToEntry" and "multiplyEntry".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1188941 13f79535-47bb-0310-9956-ffa450edef68

f9f0e18a2487c72016dfe2b203b05fe6a925c6dc
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ceb551bae178f85156a7d8d04e990894cadde611
1319577406
Gilles Sadowski
MATH-689
Moved "round" methods over to class "Precision".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1188915 13f79535-47bb-0310-9956-ffa450edef68

ceb551bae178f85156a7d8d04e990894cadde611
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:100644 100644 f9b9fb9ff01667bde44cbb7eb60eb740a5df8123 edc86af62bae2c0fd02fa176b43137fcba986fb9 M	src/main/java/org/apache/commons/math/util/Precision.java
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:100644 100644 2e303b7ff09585d39da0f296699f613f043e5655 4c616d0b989240dce3185eac037300579d10ec89 M	src/test/java/org/apache/commons/math/util/PrecisionTest.java

bf1e4148b91aa19b2faea9f1c0911b323cc441d0
1319542299
Gilles Sadowski
MATH-621
Javadoc.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1188614 13f79535-47bb-0310-9956-ffa450edef68

bf1e4148b91aa19b2faea9f1c0911b323cc441d0
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3f4c6bacd78f910f46fad193afc6de314d7f13ae
1319528228
Sebastien Brisard
1. Minor changes to Javadoc of SYMMLQ implementation, following Pr. M. A. Saunders review.
2. Added Michael Saunders as a contributor in the POM.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1188549 13f79535-47bb-0310-9956-ffa450edef68

3f4c6bacd78f910f46fad193afc6de314d7f13ae
:100644 100644 2feeff7b1f83f0c496f460a42b5d34b0a05e0336 2f96e26d43b4a8f077742134cde4823e5490855e M	pom.xml
:100644 100644 4f98802142da5bcf3d8dad2aa704a305a7eecf0c 70f130923bfd57af45b1c79592c3f35436dad86c M	src/main/java/org/apache/commons/math/linear/SymmLQ.java

bad616b685ec5bf1e2dce65d240d9cbeab834431
1319490572
Gilles Sadowski
MATH-621
Several variables (passed around as function arguments but changed in-place)
replaced by instance fields.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1188383 13f79535-47bb-0310-9956-ffa450edef68

bad616b685ec5bf1e2dce65d240d9cbeab834431
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4d822c7abb1e80890ae9b86311a82a80e52e468d
1319288467
Sebastien Brisard
Fixed SVN properties

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1187709 13f79535-47bb-0310-9956-ffa450edef68

4d822c7abb1e80890ae9b86311a82a80e52e468d
:100644 100644 955763073848730d6bbf88aadd03ae8590846f89 4f98802142da5bcf3d8dad2aa704a305a7eecf0c M	src/main/java/org/apache/commons/math/linear/SymmLQ.java
:100644 100644 92d0fc1481693037fdc9015b5303e4c8a6c2f9e5 c9c68cbff9fac3777bc517a58e459cf9eca34313 M	src/test/java/org/apache/commons/math/linear/SymmLQTest.java

cbc94ef2f4928c1062c796c0d21ef1df389f821d
1319265391
Sebastien Brisard
Implementation of the SYMMLQ iterative linear solver, based on Pr. Saunders FORTRAN impl.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1187657 13f79535-47bb-0310-9956-ffa450edef68

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8dcd1aff544e084420224bcccfbdf4ce2d854a93
1319069214
Gilles Sadowski
MATH-621
Removed seemingly unnecessary code: labelled block ("L120"), and conditional
that always evaluates to true (for the current set of unit tests).


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1318979534
Gilles Sadowski
MATH-621
Reordering of operations leads to unit tests failures.


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1318969842
Gilles Sadowski
MATH-690
New "copySign" method.


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1318948453
Gilles Sadowski
MATH-621
Local variables defined at initialization.


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Gilles Sadowski
MATH-685
Method "addToEntry" in "RealVector".


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Gilles Sadowski
"add", "multiply", "compose" instances of "DifferentiableUnivariateRealFunction".


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Gilles Sadowski
Added "derivative".


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Gilles Sadowski
Added a test method that uses "PerfTestUtils" to do the benchmark.


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1318802445
Gilles Sadowski
Javadoc.


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Gilles Sadowski
Added "derivative".


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Gilles Sadowski
Added "derivative".


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1318726302
Gilles Sadowski
Added "derivative".


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Phil Steitz
Replaced temporary matrices / entry mutators with double[][] arrays to speed computation in loops.  JIRA: MATH-612.  Reported and patched by Christopher Nix.

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1318627320
Phil Steitz
Replaced temporary matrices / entry mutators with double[][] arrays to speed computation in loops.  JIRA: MATH-612.  Reported and patched by Christopher Nix.

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Phil Steitz
Replaced temporary matrices / entry mutators with double[][] arrays to speed computation in loops.  JIRA: MATH-612.  Reported and patched by Christopher Nix.

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1318603838
Gilles Sadowski
Added "derivative".


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1318590257
Luc Maisonobe
Fixed javadoc.

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1318544464
Gilles Sadowski
MATH-690
Removed "sign(float)" and "sign(double)" from "MathUtils"; replaced uses by
calls to "signum" in "FastMath".


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Gilles Sadowski
MATH-690
Removed "sinh" and "cosh" from "MathUtils"; replaced uses with calls to
equivalent in "FastMath".


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1318542339
Gilles Sadowski
MATH-650
Improved test implementation and increased coverage for "isMonotonic"
function.


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Sebastien Brisard


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994756b1a06de64cc418413fe9a7e7507f75ff79
1318483768
Sebastien Brisard
Finished moving methods from MathUtils to ArithmeticsUtils (MATH-689)

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1182658 13f79535-47bb-0310-9956-ffa450edef68

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17d80677fa5a4aa1a44f6b0ff87cf2de18b0b95c
1318400482
Sebastien Brisard
Created ArithmeticsUtilsTest. Moved some tests from MathUtilsTest to ArithmeticsUtilsTest (MATH-689).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1182215 13f79535-47bb-0310-9956-ffa450edef68

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cec984b0ade238f8ab2b2d100569dc2e4c1f2215
1318400243
Sebastien Brisard
Created ArithmeticsUtils class (MATH-689), and corresponding unit tests. Moved some methods from MathUtils to ArithmeticsUtils.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1182213 13f79535-47bb-0310-9956-ffa450edef68

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1318376277
Gilles Sadowski
MATH-689
Moved array utilities from "MathUtils" to "MathArrays".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1182147 13f79535-47bb-0310-9956-ffa450edef68

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1318374646
Gilles Sadowski
MATH-689
Moved array utilities from "MathUtils" to "MathArrays".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1182137 13f79535-47bb-0310-9956-ffa450edef68

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1318373708
Gilles Sadowski
MATH-689
Moved arrays utilities from "MathUtils" to "MathArrays".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1182134 13f79535-47bb-0310-9956-ffa450edef68

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b59e97464fc8d910c06b90c06598d7176ce1924a
1318286154
Gilles Sadowski
MATH-689
Moved "equals..." and "compareTo" methods from "MathUtils" over to a new
"Precision" class.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1181282 13f79535-47bb-0310-9956-ffa450edef68

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1318281630
Gilles Sadowski
Lowered access level.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1181245 13f79535-47bb-0310-9956-ffa450edef68

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bc4e9db01c2a03062965fa4bac65782376ab2287
1318276563
Luc Maisonobe
Fixed an integer overflow in OpenMapRealMatrix.

JIRA: MATH-679

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1181181 13f79535-47bb-0310-9956-ffa450edef68

bc4e9db01c2a03062965fa4bac65782376ab2287
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4a702dbf7e2264c0b9757178f3afbde38e07fe41
1318276253
Gilles Sadowski
MATH-688
Replaced fractions with contant fields.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1181175 13f79535-47bb-0310-9956-ffa450edef68

4a702dbf7e2264c0b9757178f3afbde38e07fe41
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eb16d73ee29a230619798c6fb30c7cd046bc7386
1318214010
Sebastian Bazley
Recover table Javadoc lost when tables extrtacted from FastMath source file

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1180764 13f79535-47bb-0310-9956-ffa450edef68

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b3ac96ef035faf3b6ba827d05e477f0d0378ebf9
1318178433
Gilles Sadowski
Lowered access level.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1180646 13f79535-47bb-0310-9956-ffa450edef68

b3ac96ef035faf3b6ba827d05e477f0d0378ebf9
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4144ca9ae63cbb8e75d8f0562f0a3e9e310fac6f
1318177828
Gilles Sadowski
Javadoc.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1180642 13f79535-47bb-0310-9956-ffa450edef68

4144ca9ae63cbb8e75d8f0562f0a3e9e310fac6f
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e310cc19b7192f5bcb792e1a055b75df754c4956
1318161880
Gilles Sadowski
Javadoc link to reference.
Remark on numerical accuracy added as code comment.
Added unit tests.
Added normalized sinc function.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1180588 13f79535-47bb-0310-9956-ffa450edef68

e310cc19b7192f5bcb792e1a055b75df754c4956
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1318083958
Phil Steitz
Fixed javadoc typos.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1180381 13f79535-47bb-0310-9956-ffa450edef68

ff5e6b723fbd4319c9fe46d4f908139131291c6d
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b9d91ae3fb716e737028cc31a91437bebaac7e7e
1318051386
Phil Steitz
Fixed javadoc typos.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1180316 13f79535-47bb-0310-9956-ffa450edef68

b9d91ae3fb716e737028cc31a91437bebaac7e7e
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b0adfd0d4cc8089b799ed519a8bce00db430f4bf
1318050796
Phil Steitz
Simplified javadoc.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1180315 13f79535-47bb-0310-9956-ffa450edef68

b0adfd0d4cc8089b799ed519a8bce00db430f4bf
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7e8fbc33026c7556b54f10fb723cc1fc2938e150
1318050234
Phil Steitz
Fixed null handling in varargs for sortInPlace, improved javadoc, addeed tests.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1180314 13f79535-47bb-0310-9956-ffa450edef68

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f65b2c7683f89896af6d6e7dab0e2daefd22444d
1318048674
Sebastien Brisard
Fixed trailing whitespace.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1180313 13f79535-47bb-0310-9956-ffa450edef68

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1318047660
Sebastien Brisard
Added FieldElement.negate() and FieldElement.reciprocal() (MATH-686).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1180312 13f79535-47bb-0310-9956-ffa450edef68

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222516425d6be0f2df1c1ebdbe4c9c5dfbbb180a
1318039327
Gilles Sadowski
MATH-650
Large literal arrays factored out of "FastMath".
Slight efficiency improvement of "resource" alternative.
Output result in "FastMathLoadCheck".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1180294 13f79535-47bb-0310-9956-ffa450edef68

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3f45e70cc9bbee1c21f0cda81f0fde526ed0f1a2
1318020846
Gilles Sadowski
Layout and doc minor fixes.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1180232 13f79535-47bb-0310-9956-ffa450edef68

3f45e70cc9bbee1c21f0cda81f0fde526ed0f1a2
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053a0ab25a3e46f99d95587dfff9399a02f7ad1a
1318005858
Luc Maisonobe
Added forgotten equals method for the hash table elements.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1180097 13f79535-47bb-0310-9956-ffa450edef68

053a0ab25a3e46f99d95587dfff9399a02f7ad1a
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1318005064
Luc Maisonobe
Added Jacobi orthogonal polynomials.

JIRA: MATH-687

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1317998085
Luc Maisonobe
Added orthogonality tests for special polynomials.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1180055 13f79535-47bb-0310-9956-ffa450edef68

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3d931a3bedc25d108dfdd2ccc16a61e498305f13
1317972801
Luc Maisonobe
Fixed exception type

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1179951 13f79535-47bb-0310-9956-ffa450edef68

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1317972774
Luc Maisonobe
Removed unused import.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1179950 13f79535-47bb-0310-9956-ffa450edef68

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1317972617
Luc Maisonobe
Fixed compilation errors due to recent exception changes.

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7d51442772321537da5b300fda16b3f13b7e714b
1317972386
Luc Maisonobe
Added checkstyle filter for declaration orders in FastMath.

FastMath uses very large tables which are located at end of class for
better readability. this is not a standard layout, but is well suited
for this case, hence we explicitly suppress checkstyle warning for these
tables.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1179948 13f79535-47bb-0310-9956-ffa450edef68

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ef69daf8123c2f85e7e82912946e02180eba8862
1317972351
Luc Maisonobe
Added checkstyle filter for exceptional catch of RuntimeException.

These catch occur in multi-start optimizers. The exceptions are caught
and stored, and if all restarts fail, then one of the stored
RuntimeException is rethrown. The purpose of multi-start is both to
allow some trials to fail and to avoid being trapped in a local
extremum. Catching RuntimeException is therefore mandatory here, and not
dangerous since we rethrow them as needed.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1179947 13f79535-47bb-0310-9956-ffa450edef68

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1317964877
Greg Sterijevski
JIRA Math-630 First push of PivotingQRDecomposition

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1317960443
Phil Steitz
Fixed javadoc.

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Phil Steitz
Javadoc fixes.

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1317957550
Phil Steitz
Improved javadoc, added test.

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1317957485
Phil Steitz
Javadoc fixes.

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1317915881
Gilles Sadowski
MATH-683     
New method "shift" to compute coefficients of a polynomial (due to R. di Costanzo).


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1317867260
Sebastien Brisard
Modifications to the ConjugateGradient class and unit tests
  - altered the way iterations are counted: Incrementor is incremented prior to any modification to the current state, so that the solver is in a consistent state (accessible residual corresponds to the last estimate of the solution), even in case of MaxCountExceededException occuring.
  - modified some tests which were not testing anything.

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1317737668
Luc Maisonobe
Fixed test changed by former exceptions modifications.

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Luc Maisonobe
Fixed overzealous replacement of equations by expandable ...

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1317737642
Luc Maisonobe
Replaced obsolete exceptions.

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1317737626
Luc Maisonobe
Fixed missing generics.

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a4b2642f11650f000768e82fa3d7f34fe894bfd2
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Sebastien Brisard
Added method multiply(int) to FieldElement, and updated implementing classes and tests accordingly. Solves MATH-684.

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1317629588
Sebastien Brisard
Translated error messages for IllConditionedOperatorException and SingularOperatorException into french.

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9398cf6e04bd56f4e128bea93f9339fc57544fe4
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cb11fdc7b8173da6ffc6904b2f6c8582aea62d85
1317623601
Sebastien Brisard
- Replaced LinearOperator with Operator in exception names in order to make them shorter (as discussed on the ML).
- Created IllConditionedOperatorException.
- Created SingularOperatorException (as discussed on the ML).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1178306 13f79535-47bb-0310-9956-ffa450edef68

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1317616587
Phil Steitz
Eliminated MathException from distribution interfaces and impls.

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Phil Steitz
Removed trailing space.

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Phil Steitz
Added constructor taking a localized message.

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Luc Maisonobe
Fixed about 90 checkstyle errors.

The errors were mainly trailing blanks, missing javadoc, wrong javadoc
parameters, hidden variables ...

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c5262ffbb9ad4438c9a3e20b8df03e904cbebb81
1317584508
Luc Maisonobe
Removed unused exception.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1178234 13f79535-47bb-0310-9956-ffa450edef68

c5262ffbb9ad4438c9a3e20b8df03e904cbebb81
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a00cb54e5e56b7370be0dc105d991d68e59eaa5b
1317582229
Phil Steitz
Replaced obsolete exceptions.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1178223 13f79535-47bb-0310-9956-ffa450edef68

a00cb54e5e56b7370be0dc105d991d68e59eaa5b
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de98bd28d4c02752611391fd4c29cf535649f89d
1317579618
Phil Steitz
Replaced obsolete exceptions.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1178213 13f79535-47bb-0310-9956-ffa450edef68

de98bd28d4c02752611391fd4c29cf535649f89d
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1d5be0610d78ba72b831fdd36ba8a76d41b872ee
1317579003
Phil Steitz
Replaced obsolete exceptions.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1178211 13f79535-47bb-0310-9956-ffa450edef68

1d5be0610d78ba72b831fdd36ba8a76d41b872ee
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04e8bd5074535eb00b5a843b4adcb9ea8de9e564
1317572404
Phil Steitz
Replaced obsolete exception.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1178202 13f79535-47bb-0310-9956-ffa450edef68

04e8bd5074535eb00b5a843b4adcb9ea8de9e564
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4a13c4c7b7f2c5f1c312fdda41f944e2d4f30d2b
1317570459
Phil Steitz
Fixed javadoc typos.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1178198 13f79535-47bb-0310-9956-ffa450edef68

4a13c4c7b7f2c5f1c312fdda41f944e2d4f30d2b
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9daae477a4ac0284fba0d30bb903279c119495b8
1317570191
Phil Steitz
Fixed javadoc typos.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1178197 13f79535-47bb-0310-9956-ffa450edef68

9daae477a4ac0284fba0d30bb903279c119495b8
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72c673a71761dc82c15b738cd616e78eff951149
1317569120
Luc Maisonobe
Added a cache file for checkstyle TreeWalker.

Using maven chekstyle plugin up to version 2.7, this property is not set
by default and should be set explicitely in the checkstyle configuration
file to prevent the report generation from failing.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1178196 13f79535-47bb-0310-9956-ffa450edef68

72c673a71761dc82c15b738cd616e78eff951149
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561c792ecc67004e9bd9d92d193c6e67722009eb
1317567926
Luc Maisonobe
Replaced obsolete exceptions.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1178195 13f79535-47bb-0310-9956-ffa450edef68

561c792ecc67004e9bd9d92d193c6e67722009eb
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128669ff8aedd0b0c8971ee571d99041847699db
1317560441
Gilles Sadowski
MATH-676
Faster "multiply" method.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1178186 13f79535-47bb-0310-9956-ffa450edef68

128669ff8aedd0b0c8971ee571d99041847699db
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64f6c0c933ef63310a7529cf1e1ba76677504c68
1317550694
Luc Maisonobe
Fixed javadoc.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1178173 13f79535-47bb-0310-9956-ffa450edef68

64f6c0c933ef63310a7529cf1e1ba76677504c68
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cb83d72339e35c930c30f478fbc0c633e9efbeb0
1317550303
Luc Maisonobe
Fixed javadoc.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1178172 13f79535-47bb-0310-9956-ffa450edef68

cb83d72339e35c930c30f478fbc0c633e9efbeb0
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44a4ca8d4469fdebcf5828d539b43e1f1af6b187
1317550250
Luc Maisonobe
Fixed javadoc.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1178171 13f79535-47bb-0310-9956-ffa450edef68

44a4ca8d4469fdebcf5828d539b43e1f1af6b187
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a318e0ef63c3b768d0cf1e5522e67186ee8fec8d
1317550212
Luc Maisonobe
Fixed javadoc.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1178170 13f79535-47bb-0310-9956-ffa450edef68

a318e0ef63c3b768d0cf1e5522e67186ee8fec8d
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01f9d48a87f9bf5d63fee0509d443b76a4786c11
1317549518
Luc Maisonobe
Switched to checkstyle 5.x, so we can use package-info.java.

JIRA: MATH-445

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1178168 13f79535-47bb-0310-9956-ffa450edef68

01f9d48a87f9bf5d63fee0509d443b76a4786c11
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4f76c15710ccd047dff5ac4d312d173d75bea5eb
1317547527
Luc Maisonobe
fixed missing space in package-info.java due to a script error

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1178163 13f79535-47bb-0310-9956-ffa450edef68

4f76c15710ccd047dff5ac4d312d173d75bea5eb
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83ba9853e51e7f93cb741d56609faefc8600caaa
1317499282
Luc Maisonobe
Replaced deprecated exceptions.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1178082 13f79535-47bb-0310-9956-ffa450edef68

83ba9853e51e7f93cb741d56609faefc8600caaa
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4fc19e3435d675a09c2414d9919c9a91b7bd33f9
1317498591
Luc Maisonobe
Replaced obsolete exception.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1178081 13f79535-47bb-0310-9956-ffa450edef68

4fc19e3435d675a09c2414d9919c9a91b7bd33f9
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b3c9889040b5c3a2f4bfb0468d16b479e29a7d4d
1317498566
Luc Maisonobe
Fixed javadoc.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1178080 13f79535-47bb-0310-9956-ffa450edef68

b3c9889040b5c3a2f4bfb0468d16b479e29a7d4d
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07c6c98b82a5f4fdedfee9fb007786c2e96bfdf5
1317498292
Luc Maisonobe
Replaced obsolete exception.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1178077 13f79535-47bb-0310-9956-ffa450edef68

07c6c98b82a5f4fdedfee9fb007786c2e96bfdf5
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f5676eb41ec674dc6128c34e05e077ab0db65b88
1317498094
Luc Maisonobe
Fixed javadoc

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1178076 13f79535-47bb-0310-9956-ffa450edef68

f5676eb41ec674dc6128c34e05e077ab0db65b88
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a42399673c48809aeb860f7187ee996b250c30b7
1317496140
Sebastien Brisard
Some changes to the interface of iterative linear solvers. Replaced the confusing boolean param inPlace in the solve() methods by two sets of methods: solve() and solveInPlace().

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1178073 13f79535-47bb-0310-9956-ffa450edef68

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5bb6b6d5ee261f922d1391fd0af05fbeb299b6eb
1317496012
Sebastien Brisard
Added @since tag

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1178072 13f79535-47bb-0310-9956-ffa450edef68

5bb6b6d5ee261f922d1391fd0af05fbeb299b6eb
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d53b9e9d7f6f969885f50b2e05b2104ab5321b12
1317495911
Sebastien Brisard
Removed method double[] solve(double[]), because double[] is no longer considered as equivalent to RealVector (use ArrayRealVector instead).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1178071 13f79535-47bb-0310-9956-ffa450edef68

d53b9e9d7f6f969885f50b2e05b2104ab5321b12
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4e6d8b6d84d2056844c58284d10a0eebf85f3cfc
1317495085
Luc Maisonobe
Replaced package.html with package-info.java for package documentation.

JIRA: MATH-445

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1178067 13f79535-47bb-0310-9956-ffa450edef68

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93aea79b33a4bed53924b5bfcf55f20f0b7d7097
1317486228
Gilles Sadowski
Added deprecation tag.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1178040 13f79535-47bb-0310-9956-ffa450edef68

93aea79b33a4bed53924b5bfcf55f20f0b7d7097
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bb6100b7dd69552b716beadc69ff4475fb829d69
1317482100
Luc Maisonobe
Added a getRuntimeClass method to the Field interface.

This interface allows using a complete hierarchy of fields sharing a
common interface.

JIRA: MATH-284

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1178009 13f79535-47bb-0310-9956-ffa450edef68

bb6100b7dd69552b716beadc69ff4475fb829d69
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da8550576fcdc213c528659c61a203911d3cb084
1317480741
Luc Maisonobe
Replaced last remaining uses of OptimizationException.

the replacement exceptions are unchecked ones: UnboundSolutionException,
NoFeasibleSolutionException, MaxCountExceededException ...

JIRA: MATH-457

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1178006 13f79535-47bb-0310-9956-ffa450edef68

da8550576fcdc213c528659c61a203911d3cb084
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9e6b0f8c9a7d1f3e450fc4805ea93fde4ef205ac
1317478610
Luc Maisonobe
Replaced checked ConvergenceException with an unchecked version.

JIRA: MATH-487

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1177986 13f79535-47bb-0310-9956-ffa450edef68

9e6b0f8c9a7d1f3e450fc4805ea93fde4ef205ac
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5f101484fd415819eb0f6df0f26c80ef060194f1
1317478566
Luc Maisonobe
Added notification of MATH-381 solve.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1177985 13f79535-47bb-0310-9956-ffa450edef68

5f101484fd415819eb0f6df0f26c80ef060194f1
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9776e6e59a1e5b2d77d4487f94ec0fefc5e84023
1317455839
Sebastien Brisard
Added missing SVN properties to some *.java files in package o.a.c.m.linear

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1177938 13f79535-47bb-0310-9956-ffa450edef68

9776e6e59a1e5b2d77d4487f94ec0fefc5e84023
:100644 100644 99bd59a76bc0e44224c5cf16f588777a0f795385 672bad982202ecccbedbb48d18365465e427d2e0 M	src/main/java/org/apache/commons/math/linear/CholeskyDecomposition.java

e129944033ea3d8ff38c8c7a1b001bf7ad0fae1e
1317434463
Greg Sterijevski
JIRA:MATH-678 Adding this testfile as a record, most tests are commented out

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1177884 13f79535-47bb-0310-9956-ffa450edef68

e129944033ea3d8ff38c8c7a1b001bf7ad0fae1e
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7aa9eeab706ae94a3e30d4efaccc452b5a974755
1317204620
Gilles Sadowski
Additional test.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1176809 13f79535-47bb-0310-9956-ffa450edef68

7aa9eeab706ae94a3e30d4efaccc452b5a974755
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f64c9ae378a4a780a8cab32180195c0b541dacc8
1317190720
Luc Maisonobe
updated serialization metadata as we now serialize secondary equations too

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1176745 13f79535-47bb-0310-9956-ffa450edef68

f64c9ae378a4a780a8cab32180195c0b541dacc8
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4aa93e59fa6714dbca05e5d7a53f635738bc6782
1317189402
Luc Maisonobe
added support for secondary state in ODE step interpolators

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1176734 13f79535-47bb-0310-9956-ffa450edef68

4aa93e59fa6714dbca05e5d7a53f635738bc6782
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4ca1ded7622b3c7e064ab005aabbeb79fe37047e
1317017073
Sebastien Brisard
Completed a test which did not exhaust all possibilities. Also cosmetic changes (param naming).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1175683 13f79535-47bb-0310-9956-ffa450edef68

4ca1ded7622b3c7e064ab005aabbeb79fe37047e
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28019033fd0ce5e1f2fc6e0b7177411db73a3dc6
1316987053
Gilles Sadowski
MATH-674
Moved part of the Javadoc for the "value" method over to the interface
section.


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28019033fd0ce5e1f2fc6e0b7177411db73a3dc6
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91eee49617327cb2a72f23faa341fd213e58cdec
1316963153
Luc Maisonobe
Added forgotten result dispatch in Gragg-Bulirsch-Stoer integrator.

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91eee49617327cb2a72f23faa341fd213e58cdec
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1316963079
Luc Maisonobe
revamped Jacobians computation in ODE

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db099373cb92bd1f26672c4c604e0cc6cddd49b0
1316962098
Sebastien Brisard
Added support for iterative linear solvers (Conjugate Gradient only for now). See MATH-581.

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742c710a102a9e59ed2910308d19fca44cc9b93d
1316954349
Luc Maisonobe
Changed return type for eventOccurred from int to an enumerate in ODE.

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7841d2ba4e87623a149fd3215483170e3a77c624
1316841233
Sebastien Brisard
Merged SingularValueDecomposition and SingularValueDecompositionImpl (see MATH-662).

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d2c3198c09ff2167abaccf3110f1e9d3f84aa3c6
1316840068
Sebastien Brisard
Merged RectangularCholeskyDecomposition and RectangularCholeskyDecompositionImpl (see MATH-662).

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05e4d4bd0381215407b8d2247c1f7aba01c74bf6
1316839658
Sebastien Brisard
Merged QRDecomposition and QRDecompositionImpl (see MATH-662).

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a94bd5639ea08502c2926d122234bc95c0ba992d
1316838516
Sebastien Brisard
Merged LUDecomposition and LUDecompositionImpl (see MATH-662).

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1316836865
Sebastien Brisard
Minor change to the Javadoc.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1175097 13f79535-47bb-0310-9956-ffa450edef68

6695c90f120663a42650e7e39798cb1e7596fc6b
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2500eb76f7c9f6dfe946f6385da6109f8a55e97e
1316830678
Greg Sterijevski
JIRA: MATH-607 small bug in vmove method, the 'break;' directive causes the loop to skip the code block beginning if(!bSkip40...

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1175094 13f79535-47bb-0310-9956-ffa450edef68

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d5d62a5da7bf34166cd02ce09fc5f7e620146ac0
1316783338
Gilles Sadowski
Name change: "NonMonotonousSequenceException" to "NonMonotonicSequenceException".


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fee41d9dbb6bfe3f21b79aed24ee546e25bad501
1316759579
Sebastien Brisard
Merged FieldLUDecomposition and FieldLUDecompositionImpl (see MATH-662).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1174537 13f79535-47bb-0310-9956-ffa450edef68

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63cf9886ebf4befc8d3c276445f85dd5e7ed05a7
1316748971
Greg Sterijevski
JIRA: MATH-607 Adding support for UpdatingMultipleLinearRegression to SimpleRegression

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1174509 13f79535-47bb-0310-9956-ffa450edef68

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87c292b149279fed81c31cfd03549a738175adff
1316700998
Gilles Sadowski
Use "MathInternalError" in an impossible "default" case of a "switch".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1174154 13f79535-47bb-0310-9956-ffa450edef68

87c292b149279fed81c31cfd03549a738175adff
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45c0929b228f6e218300a9ae8af90dc9742307ef
1316700789
Gilles Sadowski
Using labeled loop to avoid code duplication.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1174153 13f79535-47bb-0310-9956-ffa450edef68

45c0929b228f6e218300a9ae8af90dc9742307ef
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82047896ae7f157858dd0978d57e15d84e22c0bf
1316694947
Gilles Sadowski
Minor fixes (Javadoc formatting).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1174092 13f79535-47bb-0310-9956-ffa450edef68

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1186b56f09c2e899f16dcebc7619183f0e9ca41e
1316685302
Gilles Sadowski
Added "final".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1174032 13f79535-47bb-0310-9956-ffa450edef68

1186b56f09c2e899f16dcebc7619183f0e9ca41e
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2a4cac1922a656283ba6eecda46f125ec0a41c22
1316683094
Gilles Sadowski
Spurious space character.
Unnecessary cast.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1174009 13f79535-47bb-0310-9956-ffa450edef68

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59ed630e834e030da4ff2685d0ac74ca8250960a
1316676845
Greg Sterijevski
JIRA: MATH-675 Added isMonotone methods to MathUtils and cleaned up checkOrder.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1173974 13f79535-47bb-0310-9956-ffa450edef68

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1316673835
Sebastien Brisard
Merged EigenDecomposition and EigenDecompositionImpl (see MATH-662).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1173965 13f79535-47bb-0310-9956-ffa450edef68

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Sebastien Brisard
Replaced EigenDecomposition by EigenDecompositionImpl (preliminary cleaning for solving MATH-662).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1173964 13f79535-47bb-0310-9956-ffa450edef68

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1316630742
Sebastien Brisard
Updated @since tag

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287f41b32167b6022e720c7656c5dec1ecc887f6
1316616811
Gilles Sadowski
MATH-650
Suggesting to use "resource" files for storing large tables.
"FastMathResource" is a utility for creating and loading those resources.
"FastMathLoadCheck" modified to allow the benchmarking of the various ways
to create the tables needed in "FastMath".
"FastMathResourcesSave" shows how to create the resource files (not a "user"
functionality, as this should be done only once): The resource files have
been created and are located under "src/main/resources/data".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1173690 13f79535-47bb-0310-9956-ffa450edef68

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1316576737
Sebastien Brisard
Merged CholeskyDecomposition and CholeskyDecompositionImpl (see MATH-662).

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Sebastien Brisard
Replaced CholeskyDecomposition by CholeskyDecompositionImpl (preliminary cleaning for solving MATH-662).

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Phil Steitz
Added test for consistency of cumulativeProbability(double,double) and cumulativeProbability(double).  Contributed by Christian Winter.

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Sebastien Brisard
Added unit testing of FieldLUDecompositionImpl.Solver. This test is largely based on LUSolverTest, using Fraction instead of double. It resolves issue MATH-673.

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Sebastien Brisard
Suppressed lines which were only commented out.

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Sebastien Brisard
Removed FieldDecompositionSolver<T>.solve(T[]). This is in accordance with JIRA MATH-661.

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Sebastien Brisard
Replaced call to FieldDecompositionSolver<T>.solve(T[]) by FieldDecompositionSolver<T>.solve(FieldVector<T>). This is in accordance with JIRA MATH-661.

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Sebastien Brisard
Replaced call to FieldDecompositionSolver<T>.solve(T[]) by FieldDecompositionSolver<T>.solve(FieldVector<T>). The code works, but might be improved (replace T[] with FieldVector<T> all over?).

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Sebastian Bazley
Track name change in r1172224

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1316335923
Luc Maisonobe
Renamed the USE_PRECOMPUTED_TABLES constant into
RECOMPUTE_TABLES_AT_RUNTIME.

The previous name was in fact the exact opposite of what was really
done.

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Sebastien Brisard
Removed methods treating T[] as FieldVector. Modified SparseFieldVectorTest to allow for testing of operations on mixed types (Sparse/non-sparse).

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Sebastien Brisard
Minor changes to comply with Checkstyle requirements.

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Sebastien Brisard
Removed references to checked exception ConvergenceException in package o.a.c.m.analysis.integration. See JIRA MATH-669.

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Gilles Sadowski
Correct factor for reporting total time.


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Gilles Sadowski
Enhanced formatting of the results printed to stdout.


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Sebastien Brisard
svn:eol-style set to 'native'

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Sebastien Brisard
Genereal classes for managing iterations and handling events in iterative algorithms.

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Gilles Sadowski
Javadoc.
Better name for display.


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Sebastian Bazley
Use reflection to change the compute setting.
This allows the code to compile even though the field is private.

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Sebastian Bazley
Unused

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Sebastian Bazley
Rearrange so static classes are at the end; no need to scroll past to get to the code

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Sebastian Bazley
MATH-650 move static setup methods to helper class

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Sebastian Bazley
Reword to not reveal too much about implementation (apart from IOD of large tables).

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Sebastian Bazley
Wrong table size

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Sebastian Bazley
No point keeping factorial init code; also use actual size of FACT table.

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1315744560
Luc Maisonobe
added documentation for FastMath in user guide.

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Luc Maisonobe
improved javadoc

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1315705836
Sebastian Bazley
Factorials look nicer as whole numbers

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84c4b5cacca0ab9370ea5ae6fc270fda00585610
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39311b1023eb840595d1a52838aa47e470aa444a
1315704611
Gilles Sadowski
MATH-650
Setting "INIT_TABLES" to "false" (in order to use preset tables), as was the
case prior to revision 1167657.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1167660 13f79535-47bb-0310-9956-ffa450edef68

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9d76c94f1d97e689540b6840a0005fb0ea27f4fb
1315701011
Gilles Sadowski
MATH-650
Refactored inner classes so that one can switch (at compile time) between
using preset arrays or computing their contents.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1167657 13f79535-47bb-0310-9956-ffa450edef68

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56d4f26b5589494541f155c3962fc3e8de8db692
1315692814
Gilles Sadowski
Typo.


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56d4f26b5589494541f155c3962fc3e8de8db692
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beb832d738c1d5b21c1315041180b401858b1a0e
1315691629
Gilles Sadowski
MATH-664
Allow to pass a singularity threshold value to "getCovariances".


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1315686112
Greg Sterijevski
(MATH-649) SimpleRegression needs the ability to suppress the intercept 						

This commit pushes changes to allow the estimation of the a regression in which the intercept is constrained to be zero. I am also pushing changes to change.xml.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1167600 13f79535-47bb-0310-9956-ffa450edef68

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3134dc426d41f5d2edc4c8ee462caaff7b570210
1315632056
Greg Sterijevski
Changing doc to reflect revised constructor for SimpleRegression

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Greg Sterijevski
Added a comment as per mail list

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1315628311
Greg Sterijevski
 (MATH-649) SimpleRegression needs the ability to suppress the intercept 						

This commit pushes changes to allow the estimation of the a regression in which the intercept is constrained to be zero. I am also pushing two unit tests. 

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87b1e7f8703f69f2f6537f61ffd405bc370c98cd
1315609319
Gilles Sadowski
New constructor that enables one to customize the behaviour at counter
exhaustion (namely, select which exception to throw).


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1315605517
Gilles Sadowski
New constructor and "canIncrement" method.


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59fac3d8c7ab50a6b81efd845fd61bff52c289d1
1315583097
Gilles Sadowski
NonPositiveDefiniteMatrixException": Changed base class, and modified message so
that it is (a little) less misleading (it is closer to the actual check which can
only report that it detects non-definite-positiveness at some point of the
transformation).
Changed test in "CholeskyDecompositionImpl" to allow "O" for the threshold while
keeping the requirement that the element must be strictly positive.


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1860ab25309c04f545a2ded1d38abd1b36474204
1315578900
Gilles Sadowski
Using Junit4 annotation instead of explicit try/catch.


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1315577059
Sebastian Bazley
MATH-658 Dead code in FastMath.pow(double, double) and some improvement in test coverage
Fix test cases to use Assert rather than throws
Convert comments on test cases to assert messages

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3b27af76266eaa453d146fcd03909a9b7daffa40
1315534455
Sebastien Brisard
Removed double[][] solve(double[][]) from SingularValueDecompositionImpl.Solver

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Sebastien Brisard
Removed double[][] solve(double[][]) from QRDecompositionImpl.Solver

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68a6dab45b3effd6c615580c3b13a3c86565d997
1315534383
Sebastien Brisard
Removed double[][] solve(double[][]) from LUDecompositionImpl.Solver

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Sebastien Brisard
Removed double[][] solve(double[][]) from EigenDecompositionImpl.Solver

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e96ed8c914c0139c89cdbe88c86b539ac2b96303
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Sebastien Brisard
Removed double[][] solve(double[][]) from CholeskyDecompositionImpl.Solver

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d34e070fd607c83c0ad464170da72c47b7721d0e
1315534184
Sebastien Brisard
Removed double[][] solve(double[][]) from interface DecompositionSolver.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1166960 13f79535-47bb-0310-9956-ffa450edef68

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0a577c2f5993498b364570f1951d93160a5b010d
1315520318
Sebastian Bazley
Tab police; also removed unnecessary trailing spaces

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1315520250
Sebastian Bazley
Tab police

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1315510393
Luc Maisonobe
removed static imports

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1315497551
Sebastian Bazley
MATH-658 Dead code in FastMath.pow(double, double) and some improvement in test coverage

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1315496214
Gilles Sadowski
Deleted obsolete Javadoc.


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1315487596
Gilles Sadowski
More detailed message for "NonPositiveDefiniteMatrixException".


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d4ea54e43c3fe22de4850b1fe2cfc4ce17362c36
1315483696
Gilles Sadowski
MATH-566
Removed "MathThrowable".


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1315482774
Gilles Sadowski
Wrong message.


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9d8f28a08be2525a0794f1f7b29e120180539c99
1315480502
Gilles Sadowski
MATH-663
Removed "getData" method in "RealVector"; replaced calls with "toArray()".


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8f334ca27abe7b9bf85ebba8aedcbd00d63a5d6e
1315475784
Gilles Sadowski
Wrong place-holder.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1166594 13f79535-47bb-0310-9956-ffa450edef68

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Sebastien Brisard
Removed call to double[][] solve(double[][]) from initializeHighOrderDerivatives.

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Sebastien Brisard
Removed call to double[][] solve(double[][]) from interface DecompositionSolver.

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Sebastien Brisard
Removed call to double[][] solve(double[][]) from interface DecompositionSolver.

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Sebastien Brisard
Removed call to double[][] solve(double[][]) from interface DecompositionSolver.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1166514 13f79535-47bb-0310-9956-ffa450edef68

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Sebastien Brisard
Removed call to double[][] solve(double[][]) from interface DecompositionSolver.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1166513 13f79535-47bb-0310-9956-ffa450edef68

646513ce496f81611845e4b3bbc0864f0378c89b
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1742e8aa234ef5b9d6f2357177e6ed5f1d26f5ac
1315452170
Sebastien Brisard
Removed call to double[][] solve(double[][]) from interface DecompositionSolver.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1166512 13f79535-47bb-0310-9956-ffa450edef68

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2088737d6d6165548dfd8cd7970db961a75a7486
1315433106
Sebastian Bazley
MATH 650 FastMath has static code which slows the first access to FastMath
Enclose each large data table in nested static class so it's only loaded on first access


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1166437 13f79535-47bb-0310-9956-ffa450edef68

2088737d6d6165548dfd8cd7970db961a75a7486
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74c289e6cc999fec27551b7e16fb6245b1352a37
1315421286
Luc Maisonobe
Removed completely MathUserException.

JIRA: MATH-195

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1166311 13f79535-47bb-0310-9956-ffa450edef68

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21cc381a5ac77aab6327d1fcf889ba9d998c0a4e
1315391689
Gilles Sadowski
Added "final".
Moved declaration of "sum" where it is used.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1166099 13f79535-47bb-0310-9956-ffa450edef68

21cc381a5ac77aab6327d1fcf889ba9d998c0a4e
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Sebastian Bazley
More docn of algorithms and magic numbers

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Sebastian Bazley
Document some magic numbers; trailing spaces; other doc tweaks

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1165903 13f79535-47bb-0310-9956-ffa450edef68

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Sebastian Bazley
MATH 650 FastMath has static code which slows the first access to FastMath
First pass - convert runtime init to preset initialisers

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eab40c568bb0d839a63583803fa909f7a0268275
1315340377
Luc Maisonobe
removed MathUserException from linear package

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260d48d4be0717e8f5ba7c3a48cc2de11e07326b
1315340322
Luc Maisonobe
removed MathUserException from DFP package

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1165821 13f79535-47bb-0310-9956-ffa450edef68

260d48d4be0717e8f5ba7c3a48cc2de11e07326b
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3285b603584babfce3e386568f848f5ced072e79
1315339267
Luc Maisonobe
added documentation about error handling in user functions in the userguide

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1165810 13f79535-47bb-0310-9956-ffa450edef68

3285b603584babfce3e386568f848f5ced072e79
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fe6f1d8531f872598bf0f5d39824c1302043ac05
1315339237
Luc Maisonobe
removed MathUserException from analysis package

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1165809 13f79535-47bb-0310-9956-ffa450edef68

fe6f1d8531f872598bf0f5d39824c1302043ac05
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127b03135e6a0775eac27dd1e29d06ec4e7a55a0
1315339187
Luc Maisonobe
removed MathUserException from transform package

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1165808 13f79535-47bb-0310-9956-ffa450edef68

127b03135e6a0775eac27dd1e29d06ec4e7a55a0
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21c2e0c68a31e2022179371c0060a25313bbafdf
1315336672
Luc Maisonobe
removed MathUserException from ODE package

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1165792 13f79535-47bb-0310-9956-ffa450edef68

21c2e0c68a31e2022179371c0060a25313bbafdf
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19ffb8a7d59a24094c6008c3ddde270642f48368
1315336565
Luc Maisonobe
Removed last use of MaxEvaluationsExceededException.

This exception was now used only in ODE. It has been replaced by
MaxCountExceededException, triggered by an Incrementor instance just as
what is done in root solvers.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1165790 13f79535-47bb-0310-9956-ffa450edef68

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2d16a3940157cd66810c8e98c2d4e69bea862789
1315314355
Gilles Sadowski
MATH-621
Bug (in an unexplored code path); fixing by comparison with original code.
Added exception to track unexplored path.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1165656 13f79535-47bb-0310-9956-ffa450edef68

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9ba337758b58749cb925d5a2f2b334bc1b76a2a1
1315291123
Sebastien Brisard
Fixed a Checkstyle complaint.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1165510 13f79535-47bb-0310-9956-ffa450edef68

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be63dfdfa34833b9444c2ae02751e25a0385076f
1315290251
Sebastien Brisard
Removed double[] solve(double[]) from SingularValueDecompositionImpl.Solver

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1165508 13f79535-47bb-0310-9956-ffa450edef68

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e5304c6c7a15115a25805a47b33e141d39e30228
1315290186
Sebastien Brisard
Removed double[] solve(double[]) from QRDecompositionImpl.Solver
Had to implement toArray() in ArrayRealVectorTest to make QRSolverTest pass.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1165507 13f79535-47bb-0310-9956-ffa450edef68

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3994e3c6ef25edc95fce8a843fc2a3bb2bebfaec
1315290031
Sebastien Brisard
Removed double[] solve(double[]) from LUDecompositionImpl.Solver

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1165506 13f79535-47bb-0310-9956-ffa450edef68

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1315289858
Sebastien Brisard
Removed double[] solve(double[]) from EigenDecompositionImpl.Solver

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1165505 13f79535-47bb-0310-9956-ffa450edef68

87af8395994971b41698fd93f2be177ae3872fd8
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e45ff9ffcf611e96493aa91984ffab7a13d298ed
1315257766
Gilles Sadowski
Wrote 1e-11 instead of 10E-12 (which was probably a typo).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1165416 13f79535-47bb-0310-9956-ffa450edef68

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50bb45368fa813b2f3b6dcbbb5da761bb8e9cf6d
1315232416
Gilles Sadowski
Added a test.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1165296 13f79535-47bb-0310-9956-ffa450edef68

50bb45368fa813b2f3b6dcbbb5da761bb8e9cf6d
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c7e91c8311d306e6a8f6191f9f2f69e09f50c3ba
1315231456
Gilles Sadowski
Separating test cases.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1165287 13f79535-47bb-0310-9956-ffa450edef68

c7e91c8311d306e6a8f6191f9f2f69e09f50c3ba
:100644 100644 4bc85b8f7e2aa321578db0526b110276b3ab5f77 71bdd1e1f99e9527539a934ba998f6fae263e07c M	src/test/java/org/apache/commons/math/complex/ComplexTest.java

e82b561588a633f3bcaa8e816bd93c8ee4251602
1315206475
Sebastien Brisard
Removed sole(double[]) from the DecompositionSolver interface (see JIRA MATH-653).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1165188 13f79535-47bb-0310-9956-ffa450edef68

e82b561588a633f3bcaa8e816bd93c8ee4251602
:100644 100644 a2a809b58619c7409e6670fa4211268820d7f6f1 1e17be4678eaaa2e3638c8a15f7bcdba5dc37017 M	src/main/java/org/apache/commons/math/linear/DecompositionSolver.java

e92310e1cb0862d8a529952fb02c34a1fa6f931f
1315193422
Sebastien Brisard
In CholeskyDecompositionImpl.Solver
  - removed solve(double[]) according to JIRA MATH-653
  - removed solve(ArrayRealVector) because it entails no performance gain over the general solve(RealVector)

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1165155 13f79535-47bb-0310-9956-ffa450edef68

e92310e1cb0862d8a529952fb02c34a1fa6f931f
:100644 100644 4c38999e02919fe629183f4048b35eb12fd280ef b3202c5f721695ef24b08c9072727c2fcf0d2134 M	src/main/java/org/apache/commons/math/linear/CholeskyDecompositionImpl.java

c8dd12d5ffec2288361c47d8e5d5e05d2f070ce2
1315188554
Sebastian Bazley
Ensure Ant build behaves the same as Maven for component resources

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1165147 13f79535-47bb-0310-9956-ffa450edef68

c8dd12d5ffec2288361c47d8e5d5e05d2f070ce2
:100644 100644 0190fa628d3c719e9524d56ef62a6be8e73618cf 7b0cbc39316adf4efc7e0c89e26d731e93d08eb7 M	build.xml

443985578c0d7c1d26bb4431f546a3c50dadcf53
1315147120
Luc Maisonobe
moved the binding of the underlying exception from ExceptionContextProvider to ExceptionContext, as diccussed on the dev list

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1165034 13f79535-47bb-0310-9956-ffa450edef68

443985578c0d7c1d26bb4431f546a3c50dadcf53
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:100644 100644 27be081c7149a588306a2a60c01f54b11dd2b5b0 7924ae4cf7438b84c7b7347c7a42cc2fab0efd4d M	src/test/java/org/apache/commons/math/exception/util/ExceptionContextTest.java

798e08ad3078384047d0f6671f3c3b255ef183c3
1315147008
Luc Maisonobe
removed MathUserException from StepHandler interface

JIRA: MATH-488

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1165033 13f79535-47bb-0310-9956-ffa450edef68

798e08ad3078384047d0f6671f3c3b255ef183c3
:100644 100644 895b6638ca9dc1710701110b64d6679c70bbc8df f15ba4cd611c01f9eeb0f9c6ef19b8b3e41bb1b8 M	src/main/java/org/apache/commons/math/ode/sampling/StepHandler.java

90c98541cec486a784eae1306ee0cc4990f7dfee
1315137349
Sebastian Bazley
Fix up resource section to standard setting

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1164998 13f79535-47bb-0310-9956-ffa450edef68

90c98541cec486a784eae1306ee0cc4990f7dfee
:100644 100644 7e7627359f498577529ae9ae9278b7930896bb2f 6c9040b9d4feedcd4eb64872cd3e934dc58f5197 M	pom.xml

2e3a646107118341868f3bf1852bc86ed973166c
1315132143
Sebastian Bazley
Report missing resource rather than failing with NPE if not fount

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1164986 13f79535-47bb-0310-9956-ffa450edef68

2e3a646107118341868f3bf1852bc86ed973166c
:100644 100644 a0d1d26ab12c64c9688c59877cee48eeb6cf5ad6 6991c9030e30b1a6e7e860f0548422a122bfaa9b M	src/test/java/org/apache/commons/math/stat/CertifiedDataTest.java

e3366a9d3a539fd2c3003f64416edbe1c5d60473
1315080384
Phil Steitz
Completed reversion of r1164756 changes (for now).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1164923 13f79535-47bb-0310-9956-ffa450edef68

e3366a9d3a539fd2c3003f64416edbe1c5d60473
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:100644 100644 71bdd1e1f99e9527539a934ba998f6fae263e07c 4bc85b8f7e2aa321578db0526b110276b3ab5f77 M	src/test/java/org/apache/commons/math/complex/ComplexTest.java

e6f27ebcb9ee0a344308382b99a3894bb61b225d
1315077762
Gilles Sadowski
MATH-657
Reverting to previous behaviour, as requested by P. Steitz.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1164917 13f79535-47bb-0310-9956-ffa450edef68

e6f27ebcb9ee0a344308382b99a3894bb61b225d
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330f3fe17d132bd4e2a91ff812ccf489e77f390f
1315004701
Gilles Sadowski
MATH-657
Complex division by zero:
 z / 0 = INF if z is not ZERO
 0 / 0 = NaN


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1164756 13f79535-47bb-0310-9956-ffa450edef68

330f3fe17d132bd4e2a91ff812ccf489e77f390f
:100644 100644 ac31e4b1b440fb6e631096a0cfcb99158270bff0 137765c85b7831788aeb5e2151a9472819e5e66a M	src/main/java/org/apache/commons/math/complex/Complex.java
:100644 100644 4bc85b8f7e2aa321578db0526b110276b3ab5f77 a002b0bc2c44a8fe50137429256579da01c12a7a M	src/test/java/org/apache/commons/math/complex/ComplexTest.java

bbb5e1e198f995eddb393f820ed059aa774871c3
1314987637
Sebastien Brisard
Simplification of the conversion from RealVector to double[].

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1164662 13f79535-47bb-0310-9956-ffa450edef68

bbb5e1e198f995eddb393f820ed059aa774871c3
:100644 100644 59febb27da33bee4112a306fa7c214e2d4eab8c5 bfc121a8a9ed5055920752470688c61decc674f9 M	src/main/java/org/apache/commons/math/optimization/general/GaussNewtonOptimizer.java

37680e23b8bddb80ac4ed0dfc6eb12d25a234adf
1314981980
Sebastien Brisard
In all unit-tests of DecompositionSolver implementations: removed calls to DecompositionSolver.solve(double[]) (MATH-653)

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1164622 13f79535-47bb-0310-9956-ffa450edef68

37680e23b8bddb80ac4ed0dfc6eb12d25a234adf
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:100644 100644 70fc1f3362fd3054c681a3539f29f71e93cf01ce 296c5eb82e71a13e071eef06f4a0b141e3c9be7a M	src/test/java/org/apache/commons/math/linear/QRSolverTest.java
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18616748d2923cfb9716c8b551b250acbafedb60
1314981618
Sebastien Brisard
Units tests of RealMatrix implementations: replaced reference to DecompositionSolver.solve(double[]) by DecompositionSolver.solve(RealVector) (see MATH-653)

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1164618 13f79535-47bb-0310-9956-ffa450edef68

18616748d2923cfb9716c8b551b250acbafedb60
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:100644 100644 9099b9971e977a0f47c81fdddbe4d84756f7a3b2 edac0a36704c8652bdbd87b6170d8356cd7f8094 M	src/test/java/org/apache/commons/math/linear/BlockRealMatrixTest.java
:100644 100644 ba69bd02178a4d3e66eff64328d52ea915634d89 77de261124afff4f9398a56290d98da71897fdf0 M	src/test/java/org/apache/commons/math/linear/SparseRealMatrixTest.java

f0b12de79724b4684a42409023cff476a8b64a58
1314981281
Sebastien Brisard
Replaced reference to DecompositionSolver.solve(double[]) by DecompositionSolver.solve(RealVector) (see MATH-653)

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1164615 13f79535-47bb-0310-9956-ffa450edef68

f0b12de79724b4684a42409023cff476a8b64a58
:100644 100644 a6ef790b8d76bc6bb456b4077c4f048ba6a6658a 59febb27da33bee4112a306fa7c214e2d4eab8c5 M	src/main/java/org/apache/commons/math/optimization/general/GaussNewtonOptimizer.java

8581b76a7e3481095bd967873127920272d72eaf
1314976291
Luc Maisonobe
Use the refactored exceptions framework for ODE.

The IntegratorException and EvenException classes have been removed. The
uses of the checked ConvergenceException have been replaced by the
unchecked one from the exception package. Sanity checks now use
the nes DimensionMismatchException. Step size underflows now trigger
NumberIsTooSmallException.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1164573 13f79535-47bb-0310-9956-ffa450edef68

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50b8f0fdbd7d2013602308b6419bcc89dbb7862e
1314976036
Luc Maisonobe
Added a getter to allow retrieving the exception related to an
exception context provider.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1164570 13f79535-47bb-0310-9956-ffa450edef68

50b8f0fdbd7d2013602308b6419bcc89dbb7862e
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:100644 100644 ef5944b0f45f2c657290a07b990f2c67a8ffcd75 ae643f57c5251acced9f68b93a9e2fdefe474c1a M	src/main/java/org/apache/commons/math/exception/util/ExceptionContextProvider.java
:100644 100644 9b1dcb59aa4d414b2f213296774779a98d9a9f36 5bd7c6f8dee13907655903c630cfd303793892db M	src/site/xdoc/changes.xml

13d22f45624470ce5c07c085cf8b1ec0251eaee6
1314961799
Gilles Sadowski
MATH-631
Early detection of "Regula Falsi" algorithm being stuck due to finite
precision.
Javadoc makes it clear that either the Pegasus or the Illinois solver should
be preferred over the Regula Falsi one (due to D. Hendriks).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1164474 13f79535-47bb-0310-9956-ffa450edef68

13d22f45624470ce5c07c085cf8b1ec0251eaee6
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:100644 100644 ede0c27924a927d32e342d990753c2ca9a8ffcbb 47c340c01a047703cdfbb8438cb8cdfc7052cca2 M	src/main/java/org/apache/commons/math/analysis/solvers/IllinoisSolver.java
:100644 100644 08fb0c7d03e0e676afb49cccffcb6213d8194ae3 457c9580d5679d23da58327c36b1b65e6e466149 M	src/main/java/org/apache/commons/math/analysis/solvers/PegasusSolver.java
:100644 100644 89c50dfd0e91136a49eb0ffc64d2a0674ad4161c 71224a0da952067a263a399f324997b51441d4a9 M	src/main/java/org/apache/commons/math/analysis/solvers/RegulaFalsiSolver.java
:100644 100644 fea0abcc872acc94312c19c08f921c1858b5887a db098975f94f4f460945eee23d461b8a117af952 M	src/test/java/org/apache/commons/math/analysis/solvers/RegulaFalsiSolverTest.java

2af72281fcb919dac92b0c4e464f847adda23be1
1314922036
Gilles Sadowski
MATH-413
Optional, user-defined, convergence checker passed in the constructor.


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2af72281fcb919dac92b0c4e464f847adda23be1
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3e7a3e8f0cde866cdfe33dae387a9e796c324023
1314920256
Gilles Sadowski
MATH-413
Convergence checker passed in the constructor.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1164300 13f79535-47bb-0310-9956-ffa450edef68

3e7a3e8f0cde866cdfe33dae387a9e796c324023
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:100644 100644 044a601c0bfabf280d274640104741b708ba6b94 86ac26dc8109898c8b1df88841f48aa786d43783 M	src/test/java/org/apache/commons/math/optimization/direct/SimplexOptimizerMultiDirectionalTest.java
:100644 100644 e8dee3a0c599099f617874e2834aee75a5467a74 e9bb984766c04ba8221e2bcb60d10bb256b231f0 M	src/test/java/org/apache/commons/math/optimization/direct/SimplexOptimizerNelderMeadTest.java

6de8034647875ef7ecce49f5ca9cad1a980636c2
1314880250
Gilles Sadowski
MATH-413
Removed setters; convergence checker, line search solver and preconditioner
set in contructor.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1164044 13f79535-47bb-0310-9956-ffa450edef68

6de8034647875ef7ecce49f5ca9cad1a980636c2
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:100644 100644 95c04a3a8fde82354a3f2a2f7a4bbb3a37864318 0e286ef54f91e6770613e5fbd0b7bdce64c95085 M	src/test/java/org/apache/commons/math/optimization/general/NonLinearConjugateGradientOptimizerTest.java

909e6d2bb5cfd4def864bdd073485a9cff551965
1314876949
Gilles Sadowski
Javadoc: indicated the assumed layout of the Jacobian matrix.


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909e6d2bb5cfd4def864bdd073485a9cff551965
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917342a72b48b762093f484e0dff8a4fc97d10c6
1314857853
Phil Steitz
Improved javadoc.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1163915 13f79535-47bb-0310-9956-ffa450edef68

917342a72b48b762093f484e0dff8a4fc97d10c6
:100644 100644 4d4aad5581255348dd2fd4b685beee8b9942b8b4 04c4860fbb9571665c1d34477d11a11c633f893c M	src/main/java/org/apache/commons/math/random/ValueServer.java

b68a2cae5a9192bc95c245464054cbc2ef34bc7d
1314840277
Phil Steitz
Added erf(double,double) to Erf and used this to improve tail probability accuracy in NormalDistributionImpl.  JIRA: MATH-364.  Reported and patched by Christian Winter.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1163888 13f79535-47bb-0310-9956-ffa450edef68

b68a2cae5a9192bc95c245464054cbc2ef34bc7d
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:100644 100644 eab5978a65cc0a686ccb8833a5ee3a4d31c31261 8df7369aebe79131fabde5a7536a192ad671055c M	src/main/java/org/apache/commons/math/distribution/NormalDistributionImpl.java
:100644 100644 8cbb8b5b1e2a7c49b294597f7e999c58ef2470b7 f936be2f8321daefb8d41cafb23fc896be904d78 M	src/main/java/org/apache/commons/math/special/Erf.java
:100644 100644 7e92a1465dec554335b3e73a0e1841a0ff9d71f0 9b1dcb59aa4d414b2f213296774779a98d9a9f36 M	src/site/xdoc/changes.xml
:100644 100644 765bccc4ffc01bc0383be1eff829af501a26b6fe f0abcafd0262327d49564201814057ac4aa85d8e M	src/test/java/org/apache/commons/math/special/ErfTest.java

328c42acd8f9cc6c4b33d1bdaf86ae3ce9df0679
1314835668
Phil Steitz
Added MATH-634 and some more info on MATH-653.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1163875 13f79535-47bb-0310-9956-ffa450edef68

328c42acd8f9cc6c4b33d1bdaf86ae3ce9df0679
:100644 100644 8e3f40da90c4c1fd2405079549d6c62a9ac86d4c 7e92a1465dec554335b3e73a0e1841a0ff9d71f0 M	src/site/xdoc/changes.xml

5873d5046420ae9127cb6410c42c390607f1f26d
1314834590
Phil Steitz
Enabled reseeding of the random generators used by EmpiricalDistributionImpl
and ValueServer.  Modified ValueServer to pass its RandomData instance to
the EmpiricalDistributionImpl that it creates when used in DIGEST_MODE, so
reseeding ValueServer works as expected.  Changed EmpiricalDistributionImpl
constructor to take a RandomDataImpl instead of just RandomData (so the
instance member could be reseeded.)

JIRA: MATH-654
Reported by David James

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1163872 13f79535-47bb-0310-9956-ffa450edef68

5873d5046420ae9127cb6410c42c390607f1f26d
:100644 100644 587a0e17a8f508d35074393f3eb7584aff0a5fe0 2eff4d24ba883e4462330e21f7fa54d047d426b3 M	src/main/java/org/apache/commons/math/random/EmpiricalDistributionImpl.java
:100644 100644 4761630130181586c4536b4d5cd964e5efa2937d 4d4aad5581255348dd2fd4b685beee8b9942b8b4 M	src/main/java/org/apache/commons/math/random/ValueServer.java
:100644 100644 32582293cc1f27577c17a23d93a9773454f19703 8e3f40da90c4c1fd2405079549d6c62a9ac86d4c M	src/site/xdoc/changes.xml
:100644 100644 94ed382b8e33c2a3d9280824a3c5d4dfcee52675 9b322b12e3c0b570d073a21999872a4ab35427bc M	src/test/java/org/apache/commons/math/random/EmpiricalDistributionTest.java
:100644 100644 cd00cc8584fd064e7bb3873e54f73e137af9d701 76c9e1341c85758a455bfbb0316c6f2cbf74ea2e M	src/test/java/org/apache/commons/math/random/ValueServerTest.java

d59f8b297ed4b7da1efbf9efa67ddd19d95c338d
1314791713
Sebastien Brisard
Improvements of the javadoc of RealLinearOperator.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1163587 13f79535-47bb-0310-9956-ffa450edef68

d59f8b297ed4b7da1efbf9efa67ddd19d95c338d
:100644 100644 0dda5796f72ed291ceee71878daea37270c7c8e0 23ab5acd6aa406c2c9fc33257744d10d18ada745 M	src/main/java/org/apache/commons/math/linear/RealLinearOperator.java

74587705360fa88d142ea93d83820d4036604d5d
1314776485
Sebastien Brisard
Removed occurences of double[] from RealLinearOperator (see MATH-653)
method double[] operate(double[]) has been left in AbstractRealMatrix, according to exchanges on this JIRA ticket.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1163515 13f79535-47bb-0310-9956-ffa450edef68

74587705360fa88d142ea93d83820d4036604d5d
:100644 100644 3d31a6f5291ca91a9913f0f8b8df132a6ff892ad 85aa85c62b4140079635fb15e4f442065caad43e M	src/main/java/org/apache/commons/math/linear/AbstractRealMatrix.java
:100644 100644 1c2065f3b9999405319bc903aacd873de5b1740e 0dda5796f72ed291ceee71878daea37270c7c8e0 M	src/main/java/org/apache/commons/math/linear/RealLinearOperator.java

c27926664780f59834f3f0a77d01b27bd20d600f
1314773840
Greg Sterijevski
Adding more tests (from NIST website) to StudentT tests

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1163507 13f79535-47bb-0310-9956-ffa450edef68

c27926664780f59834f3f0a77d01b27bd20d600f
:100644 100644 f45cbf269ac9ac1f256c58c856af6cc6ba62dec3 e57c727b157dd633c654d8c50905c1ffc7e8b12e M	src/test/java/org/apache/commons/math/distribution/TDistributionTest.java

a204eb0cbe36e2f76fea7d8d1ef46aa08f61c7c1
1314634718
Phil Steitz
Javadoc fix.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1162889 13f79535-47bb-0310-9956-ffa450edef68

a204eb0cbe36e2f76fea7d8d1ef46aa08f61c7c1
:100644 100644 001a67d043912627a57ecd2bb19b05cf288e653c fc38a3a7709314e8131110c7a6d691b6d2dce4b3 M	src/main/java/org/apache/commons/math/linear/NonPositiveDefiniteMatrixException.java

31b83843dd1661425e4b6785cc6a995a20aa6c54
1314625762
Gilles Sadowski
MATH-653
Removed methods taking a "double[]" argument.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1162800 13f79535-47bb-0310-9956-ffa450edef68

31b83843dd1661425e4b6785cc6a995a20aa6c54
:100644 100644 004ec2a674a369a659cc186189c9354dbb3fe603 165f5b75cb6975e7d82e5dea2e57af6bc2e60221 M	src/main/java/org/apache/commons/math/linear/ArrayRealVector.java
:100644 100644 057578dec0678b8fd1bd1e0f466ea27f352c3180 67dd96c124eebffec3a712f7cfafda1248de5057 M	src/main/java/org/apache/commons/math/linear/EigenDecompositionImpl.java
:100644 100644 2e7328adc56cceb5524383f72ec60019c961283e 5096b99085d7a3a529bab127755a478c104140d0 M	src/test/java/org/apache/commons/math/linear/ArrayRealVectorTest.java

4a07f43cc3b9ef4eb12e5d5e07c393ff6128c3e2
1314584140
Gilles Sadowski
Inadvertently committed a file. Reverting to previous version.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1162634 13f79535-47bb-0310-9956-ffa450edef68

4a07f43cc3b9ef4eb12e5d5e07c393ff6128c3e2
:100644 100644 e9f9ed7a58c688caa8769d85f8ca8240670ea756 fea0abcc872acc94312c19c08f921c1858b5887a M	src/test/java/org/apache/commons/math/analysis/solvers/RegulaFalsiSolverTest.java

6bf1c2a0cfa845cd03d9f9549257e9b0e2d83b10
1314582264
Gilles Sadowski
MATH-653
"RealVector": Removed methods taking a "double[]" argument whenever another
exists that takes a "RealVector" argument.
Modified subclasses and unit tests accordingly.
Fixed a bug in method "subtract(RealVector)" (in class "RealVector").


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1162629 13f79535-47bb-0310-9956-ffa450edef68

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:100644 100644 5ee135475de48122e728e768315f71d8c3b2e926 9d1ff451fcb34510769e1cf096d1e1e388db5785 M	src/main/java/org/apache/commons/math/linear/RealVector.java
:100644 100644 b900e4c6f9288cffbdb07d74cf62731bccb5b0c7 65779c9f2679c03ce57e21bbe929322efb6d919d M	src/main/java/org/apache/commons/math/optimization/linear/LinearObjectiveFunction.java
:100644 100644 fea0abcc872acc94312c19c08f921c1858b5887a e9f9ed7a58c688caa8769d85f8ca8240670ea756 M	src/test/java/org/apache/commons/math/analysis/solvers/RegulaFalsiSolverTest.java
:100644 100644 a5a474414783ae94ca43a64914761e05d619c472 2e7328adc56cceb5524383f72ec60019c961283e M	src/test/java/org/apache/commons/math/linear/ArrayRealVectorTest.java
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3266e8c661bfba288095e77ccd30603039afc98c
1314571229
Gilles Sadowski
Javadoc formatting.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1162605 13f79535-47bb-0310-9956-ffa450edef68

3266e8c661bfba288095e77ccd30603039afc98c
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2671c94177fa9529d75cf50f17945ae4e8f8ae50
1314546579
Phil Steitz
Javadoc improvements.  Made it more explicit which methods modify instance data; formatting; better wording in some comments.  JIRA: MATH-653.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1162543 13f79535-47bb-0310-9956-ffa450edef68

2671c94177fa9529d75cf50f17945ae4e8f8ae50
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ef67b090740dc9692769c73ce34484e63316a9b2
1314539005
Gilles Sadowski
"@Override" not allowed there in Java 5.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1162522 13f79535-47bb-0310-9956-ffa450edef68

ef67b090740dc9692769c73ce34484e63316a9b2
:100644 100644 42bd28cf78e5a03b8a161fe350bc3c2d988f4b3f 2aaa87248638ca755fc5de8d8caaf6cd24bd3b7f M	src/main/java/org/apache/commons/math/linear/RealVector.java

ed400a85341cb4b26cdd9f5339231c3862fef77d
1314536337
Gilles Sadowski
MATH-653
Renamed "AbstracRealVector" to "RealVector" (getting rid of the "interface").
Changed "SparseRealVector" from "interface" to "abstract" class.
Modified subclasses ("extends" instead of "implements") and unit test name
("RealVectorTest" instead of "AbstractRealVectorTest") accordingly.
Slightly modified "UnmodifiableRealVectorAbstractTest" to exclude methods
that are now inherited from "Object".
Changed unmodifiable vector view from a static inner class to an anonymous
class.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1162511 13f79535-47bb-0310-9956-ffa450edef68

ed400a85341cb4b26cdd9f5339231c3862fef77d
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Greg Sterijevski
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Gilles Sadowski
MATH-413
New constructor.
Javadoc typos.


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Luc Maisonobe
Refactored integration API for consistency with solvers API.
Now the main convergence parameters are set in the constructor and remain fixed.

JIRA: MATH-501


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Gilles Sadowski
MATH-646
Unmodifiable view of a vector.


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1314138906
Luc Maisonobe
Changed integration API for consistency with solvers API. Now the main convergence
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evaluation must be provided at each call to the integration method.

JIRA: MATH-464

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Phil Steitz
Replaced deprecated exception; fixed javadoc typo.

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Phil Steitz
Update missed in r1160026. JIRA: MATH-449.

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Phil Steitz
Added storeless covariance implementation contributed by Patrick Meyer.  JIRA: MATH-449.

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Phil Steitz
Eliminated extraneous constructor and private field from SimpleRegression.  JIRA: MATH-648.

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Phil Steitz
Eliminated pluggability of ChiSquaredDistribution used by ChiSquaredDistributionTest.  JIRA: MATH-506.

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1313789719
Gilles Sadowski
MATH-621
Function "prelim": Local variables defined at initialization.


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1313708028
Gilles Sadowski
MATH-621
Unexplored code path.


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Luc Maisonobe
Added a 3D SubLine class.

JIRA: MATH-593

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1313676628
Gilles Sadowski
MATH-413
Passing convergence checker in constructor.
Added default constructor.


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Gilles Sadowski
Removed "try" blocks.


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1313672622
Gilles Sadowski
MATH-621
Removed unused variables and unused imports (due to Dietmar Wolz).


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Gilles Sadowski
MATH-621
Matrix/vector operators.


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Gilles Sadowski
MATH-645
MATH-602


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Gilles Sadowski
MATH-621
Layout.


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Gilles Sadowski
MATH-621
Function "altmov": All local variables defined at initialization.


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Gilles Sadowski
MATH-621
Function "update": All local variables defined at initialization.


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1313529356
Gilles Sadowski
MATH-621
Removed function "rescue" and "case 190" in function "bobyqb".


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Gilles Sadowski
MATH-621
Removed unnecessary test.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1158017 13f79535-47bb-0310-9956-ffa450edef68

9f69afd25cf2e80c92d83db4d7ae6fdd41426303
:100644 100644 48feecdea7eadf0fc6d7d2f1a0c959b719e9dfa6 e9276a1feed8bf9a067d0cbd95e82b6234903ecb M	src/test/java/org/apache/commons/math/optimization/direct/BOBYQAOptimizerTest.java

b9ff3cc758ca15b15ea7aec490f78fdc5c57fbe4
1313443017
Gilles Sadowski
MATH-621
All "for" loops are 0-based (thanks to Dietmar Wolz).
"FortranArray" replaced by "ArrayRealVector"; "FortranMatrix" replaced
by "Array2DRowRealMatrix"; auxiliary classes deleted.
"INDEX_OFFSET" removed.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1158015 13f79535-47bb-0310-9956-ffa450edef68

b9ff3cc758ca15b15ea7aec490f78fdc5c57fbe4
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d4f113c5573262a1995e05d65a3b0a0da4d434af
1313440309
Luc Maisonobe
Fixed handling of Infinite and NaN coefficients in linearCombination

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1157994 13f79535-47bb-0310-9956-ffa450edef68

d4f113c5573262a1995e05d65a3b0a0da4d434af
:100644 100644 c7867c11ecd81b7b5e49d25ef43d8a8728938866 be2360879e38381f9db929d4dd5da83f4bf4bdd9 M	src/main/java/org/apache/commons/math/util/MathUtils.java
:100644 100644 7b6ad8e8e2a1a370373f0076298ae5b042286b1d c2c2c33a0b262900c2ce77fef446fe20491f1c38 M	src/test/java/org/apache/commons/math/util/MathUtilsTest.java

3306daa405bc1937506ba64210dc5ae5d408b65d
1313432447
Luc Maisonobe
new tests

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1157933 13f79535-47bb-0310-9956-ffa450edef68

3306daa405bc1937506ba64210dc5ae5d408b65d
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2ca334be4b6aa077fbcf19c28952bb510e1c2e22
1313432408
Luc Maisonobe
clean up code, mainly replacing static dotProduct methods calls by non-static ones

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1157932 13f79535-47bb-0310-9956-ffa450edef68

2ca334be4b6aa077fbcf19c28952bb510e1c2e22
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:100644 100644 8c8d48001e294e323182abdcd391be418cd704ae 060ea35f7392e52334e41959abcdae5bef7d0dd5 M	src/main/java/org/apache/commons/math/geometry/euclidean/threed/OutlineExtractor.java
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:100644 100644 0c15fc662f93557a1ee8f6ba937ecb9c3b4fbf9b e04af679cbf37ae73890db2ffd417386a7286c42 M	src/main/java/org/apache/commons/math/geometry/euclidean/threed/PolyhedronsSet.java
:100644 100644 ce989203af8d9efefa7c4fb1afef285bacffce81 b492a6e7f2add86c005eabc04467263c075a6ddd M	src/main/java/org/apache/commons/math/geometry/euclidean/threed/SubPlane.java

50747ca40587bc29710c263a9cf164002fd26c78
1313400752
Luc Maisonobe
simplified signature of intersection method

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1157748 13f79535-47bb-0310-9956-ffa450edef68

50747ca40587bc29710c263a9cf164002fd26c78
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1b989ad91b864f07366ba737f8f05dcd84aec185
1313398179
Luc Maisonobe
fixed charact with wrong encoding

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1157739 13f79535-47bb-0310-9956-ffa450edef68

1b989ad91b864f07366ba737f8f05dcd84aec185
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21af49c2c86dcd4e481a7ef9ff24c6a0d3466ff6
1313334213
Sebastian Bazley
Fix up mangled char in comment
Looks to have been a UTF-8 char originally?

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1157540 13f79535-47bb-0310-9956-ffa450edef68

21af49c2c86dcd4e481a7ef9ff24c6a0d3466ff6
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e3b42f703f2da15cec97030c0e9190acbd5f0b77
1313333825
Sebastian Bazley
Fix up mangled char in comment.
Looks to have been a UTF-8 char originally?

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1157539 13f79535-47bb-0310-9956-ffa450edef68

e3b42f703f2da15cec97030c0e9190acbd5f0b77
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09e35881f1ad74335707e70aa78fd347e37d1066
1313259013
Gilles Sadowski
MATH-645
Iterate on the original vector, not on the copy that is modified.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1157403 13f79535-47bb-0310-9956-ffa450edef68

09e35881f1ad74335707e70aa78fd347e37d1066
:100644 100644 5db488466b6e87bd206b5647476d61a528d9a1a0 13ebfd24d49e867ae3f9ae116dadfcd875210567 M	src/main/java/org/apache/commons/math/linear/OpenMapRealVector.java
:100644 100644 e23bfa01c772254b12b3b81d81654ee00a7d12a6 8ab628c68236090c9a6e84e282223e85b8b8985a M	src/test/java/org/apache/commons/math/linear/SparseRealVectorTest.java

0b78d9accafadffe00697c2c56706043cdba5e64
1313226519
Gilles Sadowski
MATH-621
Added temporary constant "INDEX_OFFSET" to keep track of where changes are
needed for converting from 1-based to 0-based indexing. 


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1157355 13f79535-47bb-0310-9956-ffa450edef68

0b78d9accafadffe00697c2c56706043cdba5e64
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2ce0a51bb5de3eb05e2627332e9f4389ac4ebb98
1313225864
Gilles Sadowski
Changed loop condition to avoid additional test.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1157352 13f79535-47bb-0310-9956-ffa450edef68

2ce0a51bb5de3eb05e2627332e9f4389ac4ebb98
:100644 100644 6682df2b095b084e17ed9a13ab12e1033c46babf 126d01a8949ee2d6be8be20ce0954fb636da1cc1 M	src/main/java/org/apache/commons/math/linear/SingularValueDecompositionImpl.java

be0d5800fd33ad552ebd47e5883dd722a72a4bf7
1313221542
Gilles Sadowski
MATH-602
Inverse condition number.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1157345 13f79535-47bb-0310-9956-ffa450edef68

be0d5800fd33ad552ebd47e5883dd722a72a4bf7
:100644 100644 b7a3feff4166cbd791f3b4b4861f80e538ce7e7a 6682df2b095b084e17ed9a13ab12e1033c46babf M	src/main/java/org/apache/commons/math/linear/SingularValueDecompositionImpl.java
:100644 100644 55578b3c687c26e57a0feb7415291c57962547c3 cbac286b0289510141a5f4e6212468e079ab3d84 M	src/test/java/org/apache/commons/math/linear/SingularValueDecompositionImplTest.java

7855e7c65a5ecc769bbd984643abd55fce34d373
1313220218
Gilles Sadowski
MATH-601
Replaced call to "max" with the already known result "m".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1157342 13f79535-47bb-0310-9956-ffa450edef68

7855e7c65a5ecc769bbd984643abd55fce34d373
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82377f0b51a996fbe2b0429abad64ddf8d5cd855
1313216902
Phil Steitz
Fixed javadoc typo.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1157339 13f79535-47bb-0310-9956-ffa450edef68

82377f0b51a996fbe2b0429abad64ddf8d5cd855
:100644 100644 ef476100c3b9f3fe2c3838489131505297c1a730 70447d1091b403d102dc41f8961eb95b39d82c8d M	src/main/java/org/apache/commons/math/stat/regression/SimpleRegression.java

875bdf01c34ff76004b174c8c2e594d7558fc64e
1313216412
Phil Steitz
Made pseudo-inverse consistent with rank computation in
SingularValueDecompositionImpl.
JIRA: MATH-601
Reported by Chris Nix
Patched by Chris Nix and Greg Sterijevxki

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1157336 13f79535-47bb-0310-9956-ffa450edef68

875bdf01c34ff76004b174c8c2e594d7558fc64e
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:100644 100644 21b328eb38997a4e0316dc988ccbeee4cf124836 7ca977c90f9c4680cd16508f1ed0ad19a0857f70 M	src/site/xdoc/changes.xml

91f9106a9d21fab13a64bbed6eeb94c7e69e4b8f
1313190706
Gilles Sadowski
Code cleanup: "0.0" -> "0", "1.0" -> "1".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1157288 13f79535-47bb-0310-9956-ffa450edef68

91f9106a9d21fab13a64bbed6eeb94c7e69e4b8f
:100644 100644 5366c99627140f437018fde6bbd6d9849074c79d 5aab5e94253844791c7e196cae5cdbf61339c95e M	src/main/java/org/apache/commons/math/linear/SingularValueDecompositionImpl.java

c8e8a51f7809e173979c1abaa54688114038e34e
1313190077
Gilles Sadowski
Code cleanup: Removed calls to "min" function when result was already known.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1157285 13f79535-47bb-0310-9956-ffa450edef68

c8e8a51f7809e173979c1abaa54688114038e34e
:100644 100644 a5d5ef92366b39d69fec2946ecc2ee11e6d58e2c 5366c99627140f437018fde6bbd6d9849074c79d M	src/main/java/org/apache/commons/math/linear/SingularValueDecompositionImpl.java

553481185f008021b567774132855b67d0c3c4f3
1313188933
Gilles Sadowski
Code cleanup: Removed "wantu" and "wantv" that were unconditionally
set to "true".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1157281 13f79535-47bb-0310-9956-ffa450edef68

553481185f008021b567774132855b67d0c3c4f3
:100644 100644 a4615836e013c6c14aa0fc2d90531cbcad3b5779 a5d5ef92366b39d69fec2946ecc2ee11e6d58e2c M	src/main/java/org/apache/commons/math/linear/SingularValueDecompositionImpl.java

586de10889a591fae9b81f12cccf8efdd8795688
1313188649
Gilles Sadowski
Code cleanup: Removed unnecessary parentheses, empty lines.
Bitwise operator replaced by logical one.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1157280 13f79535-47bb-0310-9956-ffa450edef68

586de10889a591fae9b81f12cccf8efdd8795688
:100644 100644 c820c976d61da22e3a47b1628daf9ddacce1fc12 a4615836e013c6c14aa0fc2d90531cbcad3b5779 M	src/main/java/org/apache/commons/math/linear/SingularValueDecompositionImpl.java

39cf5e69259d7560d50553caf028f9229b721013
1313167706
Gilles Sadowski
MATH-631
Reverted to original behaviour.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1157185 13f79535-47bb-0310-9956-ffa450edef68

39cf5e69259d7560d50553caf028f9229b721013
:100644 100644 b3a23a1d4218ccaa9a40e4939b542c5eedbb1673 c781a9011918f0f6a9c3c01f04524b8ab0afda10 M	src/main/java/org/apache/commons/math/analysis/solvers/BaseSecantSolver.java
:100644 100644 df729f7b654a9aa51d360b0ae25f170fc44f72d3 fea0abcc872acc94312c19c08f921c1858b5887a M	src/test/java/org/apache/commons/math/analysis/solvers/RegulaFalsiSolverTest.java

ef028845113aca7e1159b1725edd7c39ed686faf
1313154690
Gilles Sadowski
Added "final".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1157088 13f79535-47bb-0310-9956-ffa450edef68

ef028845113aca7e1159b1725edd7c39ed686faf
:100644 100644 a9d896ef5ffcf05456d84b56a0e99161a4d4b3f4 c820c976d61da22e3a47b1628daf9ddacce1fc12 M	src/main/java/org/apache/commons/math/linear/SingularValueDecompositionImpl.java

86c27397ba41475324971390d182d943cd24e425
1313154058
Gilles Sadowski
Replaced 2 calls to "max(m,n)" by the already known value ("m"), as requested
by Greg Sterijevski on the "dev" ML.
Added "final" keyword.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1157083 13f79535-47bb-0310-9956-ffa450edef68

86c27397ba41475324971390d182d943cd24e425
:100644 100644 9ce7edb540a0ce5b392d85d0ce61943188ca2600 a9d896ef5ffcf05456d84b56a0e99161a4d4b3f4 M	src/main/java/org/apache/commons/math/linear/SingularValueDecompositionImpl.java

e8d1ff6df5314468f2616c249582a8bcd239b402
1313127595
Phil Steitz
Added methods to solve upper and lower triangular systems.  JIRA: MATH-624.  Contributed by Greg Sterijevski.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1156968 13f79535-47bb-0310-9956-ffa450edef68

e8d1ff6df5314468f2616c249582a8bcd239b402
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:100644 100644 41922764a47112a204348ac60c2bfe9ff7763b27 21b328eb38997a4e0316dc988ccbeee4cf124836 M	src/site/xdoc/changes.xml
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d601341edf8f2611dbd44b8387ddaf431fa97629
1312780894
Phil Steitz
Removed trailing spaces.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1154843 13f79535-47bb-0310-9956-ffa450edef68

d601341edf8f2611dbd44b8387ddaf431fa97629
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:100644 100644 46601aa6c9314770301bf346076ac197bf951646 4978330dfe4d59050e4894ac86783850c1640087 M	src/main/java/org/apache/commons/math/random/RandomDataImpl.java

730e3783ef0336f27c02d54f57d6548b73923754
1312777324
Phil Steitz
Improved performance of nextInt(int) in BitsStreamGenerator. JIRA: MATH-642

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1154815 13f79535-47bb-0310-9956-ffa450edef68

730e3783ef0336f27c02d54f57d6548b73923754
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7700792f531182ba9289f8fc7128647fa4749234
1312705082
Gilles Sadowski
Removed "@Override"


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1154670 13f79535-47bb-0310-9956-ffa450edef68

7700792f531182ba9289f8fc7128647fa4749234
:100644 100644 ef3a75a57a931d063c3a860a469e5d84d22af33b df729f7b654a9aa51d360b0ae25f170fc44f72d3 M	src/test/java/org/apache/commons/math/analysis/solvers/RegulaFalsiSolverTest.java

2f066a5b2d2fe8a00a251a3220b0d52446fe392d
1312669615
Gilles Sadowski
MATH-631
Work around infinite loop.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1154614 13f79535-47bb-0310-9956-ffa450edef68

2f066a5b2d2fe8a00a251a3220b0d52446fe392d
:100644 100644 fde7172e39d41215d2acd3922909dea0dbe3ce7c b3a23a1d4218ccaa9a40e4939b542c5eedbb1673 M	src/main/java/org/apache/commons/math/analysis/solvers/BaseSecantSolver.java
:100644 100644 c89ac0e8340756302c1d5eda92175b9cb5829c69 ef3a75a57a931d063c3a860a469e5d84d22af33b M	src/test/java/org/apache/commons/math/analysis/solvers/RegulaFalsiSolverTest.java

34fef656d03a5ba75047a55a894f6f72cbe59f2e
1312650398
Gilles Sadowski
MATH-621

Change history:
 Constants in procedures replaced by static final fields.
 NF eliminated (function evaluation counting is done in base class).
 MAXFUN eliminated (exception is thrown by base class).
 -1e300 replaced by NEGATIVE_INFINITY.
 1e300 replaced by POSITIVE_INFINITY.
 Number of interpolation points set at construction (no automatic default to "2n+1" if set to "-1").
 Replaced "checkParameters()" with "setup()" and moved validity checks from "doOptimize()" to "setup()".
 Replaced "boundaries[][]" with two "double[]" for the constraints.
 Removed unit test "testBoundariesNoData" ("null" is interpreted as "no constraints").
 Replaced "xl" and "xu" with "lowerBound" and "upperBound", respectively (Fortran 1-based indexing still used).
 Replaced "x" with "currentBest".
 Replaced "rhobeg" with "initialTrustRegionRadius". Using instance field directly instead of passing it as function argument.
 Replaced "rhoend" with "stoppingTrustRegionRadius". Using instance field directly instead of passing it as function argument.
 Removed all parameters from "bobyqa" function (using instance fields directly).
 Removed (from "bobyqa" function) a test on the bound difference: It would never fail because of the auto-correction in "setup".
 Replaced "ScopedPtr" by "FortranArray" for all one-dimensional data.
 0-based loop in "bobyqa".
 Replaced "ScopedPtr" by "FortranMatrix" for all matrix data.
 Loop-local counters in all functions.
 Replaced kopt with "trustRegionCenterInterpolationPointIndex" instance variable.
 Removed "ndim", "n" and "npt" from the arguments list of all functions.
 Removed "w" from the arguments list of "update".
 Removed "w" from the arguments list of "altmov" (replaced with local variables "work1" and "work2").
 In "trsbox" arguments list, replaced "ScopedPtr" ("gnew", "xbdi", "s", "hs", "hred") by "FortranArray".
 Removed "ptsaux", "ptsid" from arguments list of "rescue" (replaced with local variables).
 Corrected bug in "rescue" function.
 Removed "w" from arguments list of "rescue".
 Removed "glag" and "hcol" from arguments list of "altmov" (replaced by local variables).
 Removed "w" from arguments list of "bobyqb" (replaced by local variables).
 Removed global work space "w".
 Removed auxiliary class "ScopedPtr".
 Removed "alpha" and "cauchy" ("DoubleRef") in "altmov" arguments list: Values returned in a "double[]" array.
 Removed "dsq" and "crvmin" ("DoubleRef") in "trsbox" arguments list: Values returned in a "double[]" array.
 Removed "DoubleRef" auxiliary class.
 Removed unused local variables; changed some to be "final".

This is still an intermediate version. Please do not commit any changes
without discussing it on JIRA.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1154550 13f79535-47bb-0310-9956-ffa450edef68

34fef656d03a5ba75047a55a894f6f72cbe59f2e
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:100644 100644 3d33243389091a9c9cfdbff3659321d80b7448bf 48feecdea7eadf0fc6d7d2f1a0c959b719e9dfa6 M	src/test/java/org/apache/commons/math/optimization/direct/BOBYQAOptimizerTest.java

b8d5b88cb6ad94658c35b62c686d858f675ae52e
1312649679
Gilles Sadowski
MATH-621
Original contribution due to Dietmar Wolz: Fortran code translated in Java.
This commit is for reference only; work is under way to adapt the code into
a more maintainable version.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1154543 13f79535-47bb-0310-9956-ffa450edef68

b8d5b88cb6ad94658c35b62c686d858f675ae52e
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8afbbb7af8f4e174419afa42cee2f9e5a055b769
1312628521
Gilles Sadowski
More efficient implementation: Removed unnecessary arrays.
Added another test.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1154485 13f79535-47bb-0310-9956-ffa450edef68

8afbbb7af8f4e174419afa42cee2f9e5a055b769
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b66083340fd113292568df2edadd5bff6a49ebd5
1312589629
Gilles Sadowski
Array version of "linearCombination".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1154416 13f79535-47bb-0310-9956-ffa450edef68

b66083340fd113292568df2edadd5bff6a49ebd5
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de2c98de19f797d87ba76feee07b67a1cbcbbd67
1312582051
Gilles Sadowski
MATH-632
Added explicit note on the different behaviors for NaN values between
Java and IEEE-754.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1154392 13f79535-47bb-0310-9956-ffa450edef68

de2c98de19f797d87ba76feee07b67a1cbcbbd67
:100644 100644 eb9f3a22abc6581d59f477a00f8c19e571357331 ac31e4b1b440fb6e631096a0cfcb99158270bff0 M	src/main/java/org/apache/commons/math/complex/Complex.java
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c5e91af107171244574a78bd183c11d7dd3b318a
1312573384
Gilles Sadowski
MATH-581
New exception. Simplified others.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1154361 13f79535-47bb-0310-9956-ffa450edef68

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058ce107b6eace6757ebe498e40a5aa929297c7b
1312571557
Luc Maisonobe
fixed typos, it's IEEE754, not IEEE753 ...

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1154356 13f79535-47bb-0310-9956-ffa450edef68

058ce107b6eace6757ebe498e40a5aa929297c7b
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3c319db494928e9d51ea6091b301302c65f4eceb
1312556733
Luc Maisonobe
Fixed a wrong detection of rotation axis versus vectors plane in Rotation constructor using two vectors pairs.

JIRA: MATH-639

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1154257 13f79535-47bb-0310-9956-ffa450edef68

3c319db494928e9d51ea6091b301302c65f4eceb
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def9fbf8701afa6937fe582c7572c7be011c319f
1312556576
Luc Maisonobe
Use the new highly accurate linearCombination utility methods in 3D Euclidean geometry.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1154253 13f79535-47bb-0310-9956-ffa450edef68

def9fbf8701afa6937fe582c7572c7be011c319f
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ef9041f2d689c0881653fea8fc237627ddcda341
1312556509
Luc Maisonobe
Added a few linearCombination utility methods in MathUtils to compute accurately
linear combinations a1.b1 + a2.b2 + ... + an.bn taking great care to compensate
for cancellation effects. This both improves and simplify several methods in
euclidean geometry classes, including linear constructors, dot product and cross
product.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1154250 13f79535-47bb-0310-9956-ffa450edef68

ef9041f2d689c0881653fea8fc237627ddcda341
:100644 100644 99e9fb9d5f8882850dff2841b9a0a76adbf35efa 980a9a9f1bd7fc4ae8ca1dc07cf8c614af9723fe M	src/main/java/org/apache/commons/math/util/MathUtils.java
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7d08e96bb7afcc9247d39f0b000f346d01b5b9c4
1312452231
Gilles Sadowski
MATH-581
Method rename (previous one was misleading).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1153821 13f79535-47bb-0310-9956-ffa450edef68

7d08e96bb7afcc9247d39f0b000f346d01b5b9c4
:100644 100644 43d1b5c0cd2f39dbd3bfd273000a5929d92f2518 c88117a795dad45ec5384f0f16ad0c2cbf253b10 M	src/main/java/org/apache/commons/math/linear/NonPositiveDefiniteLinearOperatorException.java

e999ff71fdffdb1273bc8063450ce31091f5aa60
1312344983
Phil Steitz
Fixed bugs in AbstractRandomGenerator nextInt() and nextLong() default
implementations.  Prior to the fix for this issue, these methods
generated only positive values.

JIRA: MATH-640

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1153338 13f79535-47bb-0310-9956-ffa450edef68

e999ff71fdffdb1273bc8063450ce31091f5aa60
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:100644 100644 2533d6b6192ff4db0b28f6be1a62ab18e9e4a27b a498206e65ae2528c0c755382abd9e3ea2e1bda0 M	src/site/xdoc/changes.xml
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56de24ad935487d85108b9b3af3e1fcb8acf0ae2
1312344212
Phil Steitz
Made it clear that PerfTestUtils is in src/test (so when reading release notes, users will not expect to find it in main.)

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1153337 13f79535-47bb-0310-9956-ffa450edef68

56de24ad935487d85108b9b3af3e1fcb8acf0ae2
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090d7042b405a657b3507c834097fb20fd6129f7
1312314498
Phil Steitz
Refactored RandomGenerator tests.
* Added RandomGeneratorAbstractTest collecting stock tests for RandomGenerator
  implementations and running RandomDataTest test cases using RandomDataImpls
  constructed from generators under test.
* Added BitsStreamGeneratorTest extending RandomGeneratorAbstractTest to test
  abstract method implementations in BitStreamGenerator.
* Changed Mersenne and Well generator tests to extend RandomGeneratorAbstractTest.
* Improved test coverage (discovering MATH-640) of AbstractRandomGeneratorTest
  by making this class extend RandomGeneratorAbstractTest.
All new tests use fixed seeds.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1153257 13f79535-47bb-0310-9956-ffa450edef68

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:100644 100644 6618ac1ee025be6b813c19d23ef676bec6463948 87659cde4f65cb1829b492f373649ed2819cf912 M	src/test/java/org/apache/commons/math/random/Well44497aTest.java
:100644 100644 87f8fb588e6158615d9d91a7ac07f101c4d6f31b 150ecdd9b3169089fffcc5da0814cb86f683f82b M	src/test/java/org/apache/commons/math/random/Well44497bTest.java
:100644 100644 37c5448641d34617e8c65271806155cf643e9f04 e66e13a7fc51e1c6df8759efd48009833579637e M	src/test/java/org/apache/commons/math/random/Well512aTest.java

94e260fdcdabca4d6fe908d5b7ee5e31287b8702
1312156065
Phil Steitz
Use fixed seeds in random data generation tests.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1152663 13f79535-47bb-0310-9956-ffa450edef68

94e260fdcdabca4d6fe908d5b7ee5e31287b8702
:100644 100644 9fbc70258a058643e35ff1a28869ae2de1071015 94ed382b8e33c2a3d9280824a3c5d4dfcee52675 M	src/test/java/org/apache/commons/math/random/EmpiricalDistributionTest.java

c1a29c733bf932cd32d58f0fb9b929990b654ed8
1312155094
Phil Steitz
Made RandomGenerator configurable and reseedable.  JIRA: MATH-634.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1152662 13f79535-47bb-0310-9956-ffa450edef68

c1a29c733bf932cd32d58f0fb9b929990b654ed8
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538b031f1b4e1c54fe5dd1e018caf5b2f4d97502
1312152695
Phil Steitz
Made ConstantGenerator public and constant value configurable.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1152659 13f79535-47bb-0310-9956-ffa450edef68

538b031f1b4e1c54fe5dd1e018caf5b2f4d97502
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68248a2a821cf6f3b5c6741a212854557b9eccc5
1312152598
Phil Steitz
Clarified null contract.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1152658 13f79535-47bb-0310-9956-ffa450edef68

68248a2a821cf6f3b5c6741a212854557b9eccc5
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5a3c5f2f87367f3bf9a2a1e0b8a1926c11f174e0
1312147659
Gilles Sadowski
MATH-599
Renamed "AllowedSolutions" to "AllowedSolution".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1152644 13f79535-47bb-0310-9956-ffa450edef68

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:100644 100644 1488a289b3d856da6c05ac20683f58dfd4d19c5d 73d062623e514a54422bdcc872c54b1ac043702f M	src/test/java/org/apache/commons/math/analysis/solvers/BracketingNthOrderBrentSolverTest.java
:100644 100644 e198f12cff545db255e104621d10c23ad3a6fe13 b1b70bc3298ef163e17e9f9c7c506d08e79ccec5 M	src/test/java/org/apache/commons/math/dfp/BracketingNthOrderBrentSolverDFPTest.java

f1572ae243a7b7eb519c2e8e50314b82cdd46b87
1312127840
Phil Steitz
Corrected observed/expected value label error.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1152585 13f79535-47bb-0310-9956-ffa450edef68

f1572ae243a7b7eb519c2e8e50314b82cdd46b87
:100644 100644 9a2ab369edfd14af139cb175dbe9c91f4689405c f9d0eb69550c6a1f0b9a6c4c7c97b09b9e297508 M	src/test/java/org/apache/commons/math/random/EmpiricalDistributionTest.java

8d2eacf2084e23a27726c1aabb8371803895b47e
1312121081
Gilles Sadowski
MATH-637
Replaced "DescriptiveStatistics" by "StatisticalSummary", as suggested
by Phil.
Added some "randomness" so that the timed code has a side-effect that
cannot be optimized away by the JIT compiler.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1152584 13f79535-47bb-0310-9956-ffa450edef68

8d2eacf2084e23a27726c1aabb8371803895b47e
:100644 100644 c90ff0fd54f64d8164e2183077fd99168a64b50b b283c4467128079f922512346f1cc25b4b91ef74 M	src/test/java/org/apache/commons/math/PerfTestUtils.java

d2cfe226d9c8f6a383a47f8740a100a180a6e775
1312063197
Gilles Sadowski
MATH-637
Several modifications to avoid some potential pitfalls of micro-benchmarking:
Attempt to run GC preemptively, keep track of the computation result, output
variance of the run times.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1152524 13f79535-47bb-0310-9956-ffa450edef68

d2cfe226d9c8f6a383a47f8740a100a180a6e775
:100644 100644 6dca20f9c615823dcfa8967e9eff012beac2563e c90ff0fd54f64d8164e2183077fd99168a64b50b M	src/test/java/org/apache/commons/math/PerfTestUtils.java

baf8a3ba408bd5dd29f37675b874be176bf2484f
1312033851
Gilles Sadowski
MATH-638
Fixed Findbugs and CheckStyle warnings.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1152462 13f79535-47bb-0310-9956-ffa450edef68

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1311986310
Gilles Sadowski
Junit4 package.


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1311975988
Gilles Sadowski
MATH-637
Simple benchmarking utility.


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1311971292
Phil Steitz
Moved PRNG seeding so it actually determines fixed seed for the test.

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Luc Maisonobe
Use the new nth order bracketing Brent solver by default if user didn't specify a root solver for ODE events detection.

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1311954556
Luc Maisonobe
fixed javadoc warnings

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1311954456
Luc Maisonobe
Added a solver for Dfp-based (i.e. high accuracy) functions.

JIRA: MATH-636

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1311954261
Luc Maisonobe
Added a Brent-like solver that has higher (user specified) order and does
bracket selection on the result: BracketingNthOrderBrentSolver.

JIRA: MATH-635

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Luc Maisonobe
document some exceptions that may be thrown by derived classes

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1311953650
Luc Maisonobe
Added a few shortcut methods and predicates to Dfp
(abs, isZero, negativeOrNull, strictlyNegative, positiveOrNull, strictlyPositive).


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1311854363
Gilles Sadowski
MATH-633
"AbstractRealMatrix" inherits from "RealLinearOperator".
Added "@Override" annotations.


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1311809205
Gilles Sadowski
MATH-613
Linear combination of vectors.


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Henri Yandell
Adding PMD plugin, hope that's okay

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Henri Yandell
Removing unused import

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Henri Yandell
Removing trailing whitespace

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1311678032
Gilles Sadowski
MATH-623


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1311666485
Luc Maisonobe
typos

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Phil Steitz
Removed unused imports.

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Phil Steitz
Added ModelSpecificationException and changed UpdatingRegression impls to use it.  JIRA: MATH-607.

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1311543788
Gilles Sadowski
MATH-632
Added tests referred to in the corresponding JIRA ticket.


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1311543576
Gilles Sadowski
MATH-577


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Phil Steitz
Javadoc, removed commented out code.

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Phil Steitz
Made scalar division consistent with complex division wrt infinite arguments, improved tests.

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Phil Steitz
Javadoc.

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Sebastian Bazley
Unnecessary casts

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Sebastian Bazley
Nested inline tags are not allowed

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Sebastian Bazley
Nested inline tags are not allowed

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1311517451
Sebastian Bazley
Java 1.5 does not allow @Override for method implementations, only true overrides

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1311506515
Gilles Sadowski
MATH-577
Various enhancements to the "Complex" class, namely operators (add,
subtract, ...) taking a "double" argument, improved consistency in
the use of "NAN" and "INF" fields, updated Javadoc. Mainly due to
Arne Plöse.



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1311422966
Gilles Sadowski
Copy/paste bug.


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1311375097
Gilles Sadowski
MATH-629
Direct call to the overloaded method that actually implements the
functionality.


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1311290272
Gilles Sadowski
MATH-623
Slightly more efficient implementation of some methods (due to Arne Plöse).


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Phil Steitz
Eliminated console output from tests.

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1311281001
Mikkel Meyer Andersen
Added element for MATH-585

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1311280655
Mikkel Meyer Andersen
Added fix for MATH-585: Implemented faster generation of random gamma variates using Ahrens and Dieter (1974) and Marsaglia and Tsang (2001). Test case was improved, too.

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1311277630
Phil Steitz
Missing javadoc, extracting literals (will be removed in subsequent refactoring). JIRA: MATH-607

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1311270965
Phil Steitz
Javadoc, remove trailing spaces.  JIRA: MATH-607.

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Sebastian Bazley
Copy all test resources to agree with Maven behaviour

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1311199757
Gilles Sadowski
MATH-623
Slightly faster "add" method (due to Arne Plöse).


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1311166031
Luc Maisonobe
Allow discrete events to be detected by ODE solvers also at step start.

JIRA: MATH-605

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1311164100
Luc Maisonobe
Rewritten SVD implementation based on JAMA code.

JIRA: MATH-327, MATH-383, MATH-465, MATH-583, MATH-611

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Luc Maisonobe
removed Java 6 specific method

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1311157455
Luc Maisonobe
fixed typo on bracket type for divided differences

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1311111881
Phil Steitz
Added Miller updating regression implementation.  JIRA: MATH-607.  Contributed by Greg Sterijevski.

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1311088006
Gilles Sadowski
MATH-622
Reverted to the previous default: Many tests depend on having 2 fractional
digits.


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1311082409
Gilles Sadowski
MATH-622
Increased the number of digits to output.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1148312 13f79535-47bb-0310-9956-ffa450edef68

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1310978033
Luc Maisonobe
added forgotten delegating method from context

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76a60684fb7e5c65b7b5810df3a3debf3e553161
1310726789
Gilles Sadowski
MATH-581
Made accessors "abstract" (a per the conclusion of the thread
"RealLinearOperator and AbstractRealMatrix" on the dev ML).
Removed constructors.


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afec931d0df42d28afc70f5873de9e3e4b4c19dd
1310657111
Gilles Sadowski
MATH-617
Make "1 + 1i" appear as "1 + i" on formatted output.


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1310623962
Phil Steitz
Added casts to prevent integer division.  JIRA: MATH-619

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7707b0bb80be05bbf6533a36bb0c646cbfd1026d
1310623685
Phil Steitz
Fixed add method to match javadoc contract when one or both addends has NaN parts.

JIRA: MATH-618
Reported by Arne Plose

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1146573 13f79535-47bb-0310-9956-ffa450edef68

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1310621561
Phil Steitz
Fixed javadoc typo.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1146561 13f79535-47bb-0310-9956-ffa450edef68

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1310578061
Phil Steitz
Added tests based on NIST certified data ("Wampler").

JIRA: MATH-616
Contributed by Greg Sterijevski

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1146147 13f79535-47bb-0310-9956-ffa450edef68

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5b2451be7e569fcbd43596b7ef6483423fd10baa
1310570901
Gilles Sadowski
MATH-566
Removed unused "MathRuntimeException".


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f34508958e47b663652c2ad420e6801f7150dac3
1310551856
Gilles Sadowski
MATH-577
Replaced function calls by direct reference to the instance variable.
Removed redundant prefix for static fields.


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1310550109
Gilles Sadowski
MATH-614
Added "toString" method.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1145932 13f79535-47bb-0310-9956-ffa450edef68

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1310506474
Gilles Sadowski
MATH-581
Framework for iterative solvers.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1145779 13f79535-47bb-0310-9956-ffa450edef68

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1310501701
Phil Steitz
Removed unecessary parens around return value.  JIRA: MATH-609.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1145746 13f79535-47bb-0310-9956-ffa450edef68

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0053765dea6af83d2452bf5282a4a7794ace4f9a
1310500637
Phil Steitz
Updated patch. Fixed variable reference error.  JIRA: MATH-607

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1145743 13f79535-47bb-0310-9956-ffa450edef68

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3a0754d7a9a54a1e2719ef2d7ccd69764a7e9dbf
1310471726
Gilles Sadowski
MATH-581
Framework for iterative linear solvers.


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1310387534
Gilles Sadowski
MATH-599 (part of the patch provided by D. Hendriks on JIRA, issue MATH-605).
Improved Javadoc.
Allow a bracketing interval to contain the root at its end-points.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1145146 13f79535-47bb-0310-9956-ffa450edef68

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1310378499
Gilles Sadowski
Using "copyOf" from "MathUtils".


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Phil Steitz
Added a couple of new contributors.

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20733bd1555b543a3e649139a28d23b380dbe9d5
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1310346895
Phil Steitz
Improved efficiency in RandomDataImpl, LaguerreSolver, FastMath and
OutlineExtractor by moving conditional code into blocks where it is needed.

JIRA: MATH-609
Reported and patched by Dave Brosius

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1310345823
Phil Steitz
Removed trailing space.

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Phil Steitz
Removed trailing spaces.

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1310345540
Phil Steitz
Restored jdk 1.5 compat.

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1310341543
Phil Steitz
Added interface and reporting class for updating regression.  JIRA: MATH-607.  Contributed by Greg Sterijevski.

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Luc Maisonobe
Prevent step normalizer to output twice the last point in MULTIPLES mode.

JIRA: MATH-603

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Luc Maisonobe
updated tests threshold as events are now forced on some root sides

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1310314004
Luc Maisonobe
increased max evaluation count to allow root bracketing post-processing

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1310313939
Luc Maisonobe
use root bracketing to find events on the appropriate side according to integration direction

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Luc Maisonobe
prevent root bracketing to be attempted outside of search interval

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1310305716
Luc Maisonobe
added constructors with function value accuracy

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1310297311
Luc Maisonobe
fixed checkstyle warnings

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1310296384
Luc Maisonobe
rewrote documentation for root solvers.

JIRA: MATH-606

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1144832 13f79535-47bb-0310-9956-ffa450edef68

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1310296318
Luc Maisonobe
added a forceSide method to UnivariateRealsolversUtils to allow selecting a bracketing side
even for non-bracketing solvers like Bren or Newton

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Luc Maisonobe
Select bracketing side from the solve method instead of through a setter for consistency with the other solvers.

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Luc Maisonobe
Separate implementation of secant solver from bracketing solvers.

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Luc Maisonobe
improved javadoc

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1310295716
Luc Maisonobe
use checkNotNull

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1144821 13f79535-47bb-0310-9956-ffa450edef68

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1310031414
Gilles Sadowski
Typo in Javadoc.


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Luc Maisonobe
Added BELOW_SIDE and ABOVE_SIDE in the possible allowed solutions for bracketing solvers.

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Luc Maisonobe
typo

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Luc Maisonobe
renamed BracketedSolution into BracketedUnivariateRealSolver and make it extend UnivariateRealSolver.

This will allow specifying directly a sub-category of solvers when needed. It will be used for example by the ODE events detection mechanism, as it will ensure the integrator can automatically go past the event time.

JIRA: MATH-605

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1141920 13f79535-47bb-0310-9956-ffa450edef68

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1309520368
Luc Maisonobe
renamed BracketedSolution into BracketedUnivariateRealSolver and make it extend UnivariateRealSolver.

This will allow specifying directly a sub-category of solvers when needed. It will be used for example by the ODE events detection mechanism, as it will ensure the integrator can automatically go past the event time.

JIRA: MATH-605

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removed serialVersionUID for non-serializable classes.

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Luc Maisonobe
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Luc Maisonobe
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Luc Maisonobe
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Luc Maisonobe
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Luc Maisonobe
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Luc Maisonobe
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Luc Maisonobe
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Luc Maisonobe
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Luc Maisonobe
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Luc Maisonobe
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1309107740
Gilles Sadowski
MATH-599
Name change to avoid test failure on the automated build system ("gump").


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f9dafb86010fac653d33e47572f2f3e7e1a2ab12
1309105608
Luc Maisonobe
Removed the requiresDenseOutput method from the StepHandler interface. Now integrators always
consider dense output is required and set up the appropriate state interpolators, so step
handlers can rely on them.

JIRA: MATH-596, MATH-604

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1139831 13f79535-47bb-0310-9956-ffa450edef68

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55c2d751c7231a880e3fdac6fd2aa062e81e6d07
1308993088
Gilles Sadowski
MATH-599
Attempt to work around the build failure.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1139509 13f79535-47bb-0310-9956-ffa450edef68

55c2d751c7231a880e3fdac6fd2aa062e81e6d07
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3bd4ebcb79a6bb6df36ba3fcf23ae55d68c45ddf
1308957180
Gilles Sadowski
MATH-599
Added brackets around single-statement conditional branches.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1139460 13f79535-47bb-0310-9956-ffa450edef68

3bd4ebcb79a6bb6df36ba3fcf23ae55d68c45ddf
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6a23f66ae368949d1a0764cdcd8aad9668bda0c3
1308955003
Gilles Sadowski
MATH-599
Inserted "BaseBracketedSecantSolver" into the secant-based solvers hierarchy.
Renamed "SecantBase" to "BaseSecantSolver".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1139455 13f79535-47bb-0310-9956-ffa450edef68

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4d95c18a15bdbc2048953924d7a8dd735202a5ff
1308918549
Gilles Sadowski
Javadoc (real) fix.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1139270 13f79535-47bb-0310-9956-ffa450edef68

4d95c18a15bdbc2048953924d7a8dd735202a5ff
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203628bcd44c3aa11a43ec04b6e5eb9ad04e7488
1308911980
Luc Maisonobe
fixed Java 6 specific features

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1139235 13f79535-47bb-0310-9956-ffa450edef68

203628bcd44c3aa11a43ec04b6e5eb9ad04e7488
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:100644 100644 48e1d107dc14b4aafc0a21d3a296ba0c26cb2a58 2b310f15948519d809d7f1cd9e594799d58b0f31 M	src/main/java/org/apache/commons/math/analysis/solvers/RegulaFalsiSolver.java

da5cdba5aea3df27a884103334610f6ce89982f6
1308908613
Gilles Sadowski
Javadoc fix.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1139223 13f79535-47bb-0310-9956-ffa450edef68

da5cdba5aea3df27a884103334610f6ce89982f6
:100644 100644 260470950eb24e7dfd760fe16c69d0f8dc46f744 e256bd48cdfde8dd6b912eb1f280ddceebb0d9c2 M	src/main/java/org/apache/commons/math/analysis/solvers/AllowedSolutions.java

ed5fdf67a31518149a74e05db23371056af10842
1308874337
Gilles Sadowski
MATH-599
"SecantSolver" modified to correspond to the original algorithm. Added several
secant-based solvers. Patch provided by Dennis Hendriks.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1139126 13f79535-47bb-0310-9956-ffa450edef68

ed5fdf67a31518149a74e05db23371056af10842
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c377b9c6bc631f057b190ca331114ac7f8e67769
1308750159
Gilles Sadowski
MATH-485
"KalmanFilter" and related classes updated by Thomas Neidhart according to
comments on JIRA.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1138461 13f79535-47bb-0310-9956-ffa450edef68

c377b9c6bc631f057b190ca331114ac7f8e67769
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6eb146e27c98411e50a6916b1cd96313093ca5ae
1308744231
Luc Maisonobe
Fixed javadoc for ODEIntegrator interface.

JIRA: MATH-600

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1138419 13f79535-47bb-0310-9956-ffa450edef68

6eb146e27c98411e50a6916b1cd96313093ca5ae
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19502baded28216a3e0e93343e7d723aa1f9a7b5
1308671243
Luc Maisonobe
Extended StepNormalizer with normalization mode and bounds settings.

JIRA: MATH-595

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1138061 13f79535-47bb-0310-9956-ffa450edef68

19502baded28216a3e0e93343e7d723aa1f9a7b5
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0df6e2de90497d6b38a1d58b445fa103d6ff1912
1308606168
Mikkel Meyer Andersen
Added fix for MATH-597: Implemented faster generation of random exponential distributed values with algorithm from Ahrens and Dieter (1972): Computer methods for sampling from the exponential and normal distributions. Test case was improved, too.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1137795 13f79535-47bb-0310-9956-ffa450edef68

0df6e2de90497d6b38a1d58b445fa103d6ff1912
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e9bac4ca1bf8c6b61474b9d305e03dde1441fddd
1308599324
Luc Maisonobe
added multiple trials runs to K-means++ clustering algorithm.

JIRA: MATH-548

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1137759 13f79535-47bb-0310-9956-ffa450edef68

e9bac4ca1bf8c6b61474b9d305e03dde1441fddd
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6446b6a53dbc52b505914fa003addef07127d1bc
1308597911
Luc Maisonobe
typos

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1137752 13f79535-47bb-0310-9956-ffa450edef68

6446b6a53dbc52b505914fa003addef07127d1bc
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557952936b02434c78495f85e361e895d2c161d2
1308597103
Luc Maisonobe
Simplified SubLine API by introducing a public Segment class.

JIRA: MATH-592

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Luc Maisonobe
typo

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1137739 13f79535-47bb-0310-9956-ffa450edef68

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1308595213
Luc Maisonobe
Added a way to compute sub-lines intersections, considering sub-lines either as open sets or closed sets.

JIRA: MATH-591


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c6b6d50aa787ab299305035a7913b29efb20b542
1308165600
Luc Maisonobe
Added a way to build a sub-line from its endpoints, and to retrieve the enpoints from a sub-line.

JIRA: MATH-592

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1136154 13f79535-47bb-0310-9956-ffa450edef68

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1308159301
Phil Steitz
Removed unused import.

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1308159184
Phil Steitz
Removed unused imports.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1136129 13f79535-47bb-0310-9956-ffa450edef68

434e962c2a9a79bb4ec20f2e59551c411705b7a2
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Phil Steitz
Removed trailing whitespace.

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1308158817
Phil Steitz
Removed unused import.

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1308156290
Phil Steitz
Javadoc fix.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1136115 13f79535-47bb-0310-9956-ffa450edef68

593de8e25c3be85ad08b8d3d6c3057b1493f1c8c
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64d35b5c0abeb12e73fe2f9f627be6795aca0d8c
1308156141
Phil Steitz
Fixed javadoc error.  JIRA: MATH-589.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1136112 13f79535-47bb-0310-9956-ffa450edef68

64d35b5c0abeb12e73fe2f9f627be6795aca0d8c
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6be65936bdcfd2a3e04a7e8d50848a3ef9d36567
1308123845
Luc Maisonobe
Javadoc fixes in ODE.

JIRA: MATH-594

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1135946 13f79535-47bb-0310-9956-ffa450edef68

6be65936bdcfd2a3e04a7e8d50848a3ef9d36567
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1308074756
Luc Maisonobe
Added a way to specify a custom root solver to find events in ODE integration.

JIRA: MATH-586

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Phil Steitz
Start work on JIRA: MATH-575. Made InvalidRepresentationException extend MathIllegalArgumentException and localized error messages for this exception.

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46207d3010e04c06360f031d662e8aca37446fd8
1307928259
Phil Steitz
Javadoc fix.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1135008 13f79535-47bb-0310-9956-ffa450edef68

46207d3010e04c06360f031d662e8aca37446fd8
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1131e195598e76390a5d661d76c074f340b974a3
1307923069
Phil Steitz
Javadoc fixes.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1135007 13f79535-47bb-0310-9956-ffa450edef68

1131e195598e76390a5d661d76c074f340b974a3
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1307912877
Phil Steitz
Javadoc fixes.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1134983 13f79535-47bb-0310-9956-ffa450edef68

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846ceed3962d237e3fbfa94d9c6e5cc48aca1b2c
1307908761
Phil Steitz
Reverting previous commit.  Sorry, that was a real issue.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1134973 13f79535-47bb-0310-9956-ffa450edef68

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2f29f71b3c983e46ceb4bf746bfc0f8d83b59d10
1307908520
Phil Steitz
Removed reference to issue not impacting release.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1134970 13f79535-47bb-0310-9956-ffa450edef68

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97ce80953ef8409e247b80a9bbd206fd43e26fdb
1307907567
Phil Steitz
Added standalone test class for AbstractIntegerDistribution default implementations. JIRA: MATH-587.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1134966 13f79535-47bb-0310-9956-ffa450edef68

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7ed446aecd4b106a53af8bb236c576b896411c6e
1307899189
Phil Steitz
Fixed javadoc errors introduced in r1003512 (post 2.2 release).  JIRA: MATH-587

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1134948 13f79535-47bb-0310-9956-ffa450edef68

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1307894252
Phil Steitz
Restored specificity in exception error messages.

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5120484d8451e0e51fa3e8ca9083817b182e5178
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7491d6d38627a566c09a4556c567f76f329803b0
1307858192
Phil Steitz
Fixed error in javadoc.  JIRA: MATH-540.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1134866 13f79535-47bb-0310-9956-ffa450edef68

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32ef2f9d0545181719b4b422d0c3dc873719d205
1307841922
Phil Steitz
Improved javadoc.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1134852 13f79535-47bb-0310-9956-ffa450edef68

32ef2f9d0545181719b4b422d0c3dc873719d205
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98b9ed7b7038b7eff0b5c81019f0158a33310e6d
1307831332
Phil Steitz
Fixed error in javadoc describing the behavior of the Percentile algorithm
for small percentiles in small datasets.
JIRA: MATH-582
Reported by Andre Herbst
Patched by Christopher Nix

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1134802 13f79535-47bb-0310-9956-ffa450edef68

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4870fa9a8e5bfd2a11f17e7b16649c5ee9fd58e9
1307828366
Gilles Sadowski
MATH-485
New "filter" package. Initial implementation of Kalman filter provided
by Thomas Neidhart.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1134779 13f79535-47bb-0310-9956-ffa450edef68

4870fa9a8e5bfd2a11f17e7b16649c5ee9fd58e9
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38f8571864f958fc1f59105b09f1092f295ce074
1307298244
Luc Maisonobe
fixed unused variable warnings

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1132471 13f79535-47bb-0310-9956-ffa450edef68

38f8571864f958fc1f59105b09f1092f295ce074
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dc1f09da29ce98d7c19f8fda057b0f3d6ad8bf58
1307291273
Luc Maisonobe
Improved k-means++ clustering performances and initial cluster center choice.

JIRA: MATH-584

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1132448 13f79535-47bb-0310-9956-ffa450edef68

dc1f09da29ce98d7c19f8fda057b0f3d6ad8bf58
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789f03f525db3c44dcc4e7566f7f69751d86bf21
1307289566
Luc Maisonobe
Fixed tricube function implementation in Loess interpolation.

JIRA: MATH-504

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1132439 13f79535-47bb-0310-9956-ffa450edef68

789f03f525db3c44dcc4e7566f7f69751d86bf21
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d78d9e0670377940ca71271886cb0d8493009b12
1307288510
Luc Maisonobe
Fixed documentation of statistics examples.

JIRA: MATH-568

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1132437 13f79535-47bb-0310-9956-ffa450edef68

d78d9e0670377940ca71271886cb0d8493009b12
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5577be2a1b1e345eba7695e1a8f46177e656f701
1307287351
Luc Maisonobe
Improved documentation of general optimization with a thorough example.

JIRA: MATH-507

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1132435 13f79535-47bb-0310-9956-ffa450edef68

5577be2a1b1e345eba7695e1a8f46177e656f701
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e9c6d1de301072c16a48587db682542f967b3a9b
1307285969
Luc Maisonobe
Replaced NullPointerException by NullArgumentException

JIRA: MATH-403

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1132432 13f79535-47bb-0310-9956-ffa450edef68

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98e22d778b3a886be253638b9a6b7ec075c3d62d
1307134165
Luc Maisonobe
replaced @version tag by $Id$

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1131229 13f79535-47bb-0310-9956-ffa450edef68

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7f9c5b6c89e858024f1b3ad72059e76661d300fd
1307129036
Luc Maisonobe
fixed javadoc, checkstyle and findbugs warnings

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1131153 13f79535-47bb-0310-9956-ffa450edef68

7f9c5b6c89e858024f1b3ad72059e76661d300fd
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88c700c10b3e001fcd0662848fe0cc2c9d5a6336
1307128940
Luc Maisonobe
added missing methods in Vector1D/2D/3D

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1131152 13f79535-47bb-0310-9956-ffa450edef68

88c700c10b3e001fcd0662848fe0cc2c9d5a6336
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71ab26d48b1ffde0e5ad0e59bb3619a8b9c5aec2
1307124492
Luc Maisonobe
use the reorganized Binary Space Partitioning framework for Euclidean spaces 1D, 2D and 3D.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1131127 13f79535-47bb-0310-9956-ffa450edef68

71ab26d48b1ffde0e5ad0e59bb3619a8b9c5aec2
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e18b784c4513fc16c27e945d80350b777af4adae
1307124381
Luc Maisonobe
Improved type safety for Binary Space Partitioning and reduced complexity,
using generics where it was relevant and reorganizing interfaces.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1131125 13f79535-47bb-0310-9956-ffa450edef68

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0aa6277c80b0aa1257f893f0c0699f8a58de2c83
1307124168
Luc Maisonobe
Added a consistent classes hierarchy for Euclidean spaces in dimension 1, 2 and 3

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1131123 13f79535-47bb-0310-9956-ffa450edef68

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782a4a8d2b93262197f93a05379887d46bee4501
1306865701
Phil Steitz
Updated trunk to reflect 2.2 release.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1129833 13f79535-47bb-0310-9956-ffa450edef68

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1a3937e76e2f4e231cb949ea9c7753079c28d201
1306711097
Phil Steitz
Javadoc fixes.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1128976 13f79535-47bb-0310-9956-ffa450edef68

1a3937e76e2f4e231cb949ea9c7753079c28d201
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6fb7c7a5a7b7913a615671d4b3cbd1e14f5475a4
1305799189
Luc Maisonobe
added a method to retrieve the closest point from a line to the origin.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1124652 13f79535-47bb-0310-9956-ffa450edef68

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6208e4010c0bfb79eb9f8ef9dadd6b4b3f275f6f
1305796368
Luc Maisonobe
renamed packages oneD, twoD and threeD into oned, twod and threed

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1124619 13f79535-47bb-0310-9956-ffa450edef68

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4e00cdfe27fcf001636018818089ceefd0dc7344
1305748530
Luc Maisonobe
fixed typos

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1124398 13f79535-47bb-0310-9956-ffa450edef68

4e00cdfe27fcf001636018818089ceefd0dc7344
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66ad98c588c195bcb4f1ab781db4ef1871927e12
1305717324
Luc Maisonobe
improved javadoc as per Gilles's suggestions on the dev list.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1124191 13f79535-47bb-0310-9956-ffa450edef68

66ad98c588c195bcb4f1ab781db4ef1871927e12
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efce868eed4c8c4ffe3e6300a6c37aa851877edd
1305712104
Luc Maisonobe
improved javadoc for FastMath.

JIRA: MATH-579

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1124151 13f79535-47bb-0310-9956-ffa450edef68

efce868eed4c8c4ffe3e6300a6c37aa851877edd
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6574d80fb88ac9cee0b5d9dacc5409fb618ab63f
1305670794
Gilles Sadowski
MATH-574
Fixed Javadoc.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1104600 13f79535-47bb-0310-9956-ffa450edef68

6574d80fb88ac9cee0b5d9dacc5409fb618ab63f
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340642dbf4dc26c78176302da9c1c275bef89943
1305668325
Gilles Sadowski
MATH-574
Allow outer product of vectors of different sizes.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1104575 13f79535-47bb-0310-9956-ffa450edef68

340642dbf4dc26c78176302da9c1c275bef89943
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4cc354ca17b48b51ccd7ea6fdd98d797e04c35cd
1305549015
Gilles Sadowski
MATH-574
Allow outer product of vectors of different sizes.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1103716 13f79535-47bb-0310-9956-ffa450edef68

4cc354ca17b48b51ccd7ea6fdd98d797e04c35cd
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177c1f59a435d109886aa2f6e4110724cd2a7a14
1305548031
Gilles Sadowski
Removed unnecessary exceptions.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1103710 13f79535-47bb-0310-9956-ffa450edef68

177c1f59a435d109886aa2f6e4110724cd2a7a14
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a22d1fde5205cdbe08bcdccb5811663b22870ad2
1305547271
Gilles Sadowski
Added "@Retry".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1103707 13f79535-47bb-0310-9956-ffa450edef68

a22d1fde5205cdbe08bcdccb5811663b22870ad2
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da58a6460a83ce78df0832a5481c6d0a50a7675d
1305475325
Luc Maisonobe
A complete generic implementation of Binary Space Partitioning Trees (BSP trees)
has been added. A few specializations of this implementation are also provided
for 1D, 2D and 3D Euclidean geometry. This allows support for arbitrary
intervals sets (1D), polygons sets (2D) and polyhedrons sets (3D) with all
sets operations (union, intersection, symmetric difference, difference, complement),
with predicates (point inside/outside/on boundary, emptiness, other region contained),
with geometrical computation (barycenter, size, boundary size) and with conversions
from and to boundary representation.

JIRA: MATH-576


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1103438 13f79535-47bb-0310-9956-ffa450edef68

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0b135be427b6f5a9ab6a9772abe868fa3d326fc9
1305471633
Luc Maisonobe
add a retry feature for randomly failing CMA-ES optimizer test

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1103418 13f79535-47bb-0310-9956-ffa450edef68

0b135be427b6f5a9ab6a9772abe868fa3d326fc9
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ebb687efc867b82aa16d8514d83d91932623e895
1305465389
Luc Maisonobe
specify the field to use for field vectors and field matrices when possible
JIRA: MATH-573

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1103370 13f79535-47bb-0310-9956-ffa450edef68

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6f7be9d495295d7315b0bc66a23571225953af14
1305399086
Phil Steitz
Improved javadoc and added infinite/NaN argument tests for reduce.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1103182 13f79535-47bb-0310-9956-ffa450edef68

6f7be9d495295d7315b0bc66a23571225953af14
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351952589dba4b79b5b7ad3694f5c9c9478f18e9
1305389086
Phil Steitz
Fixed javadoc typo.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1103142 13f79535-47bb-0310-9956-ffa450edef68

351952589dba4b79b5b7ad3694f5c9c9478f18e9
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80d2042d0699e9d40f56466865e5a3b0fc983efa
1305291810
Gilles Sadowski
MATH-574
Allow outer product of vectors of different sizes.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1102704 13f79535-47bb-0310-9956-ffa450edef68

80d2042d0699e9d40f56466865e5a3b0fc983efa
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a1ef30396e36d54a6e5aceffd7d4e2d2cd30b464
1305215380
Gilles Sadowski
MATH-574
Allow outer product for vectors of different sizes.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1102356 13f79535-47bb-0310-9956-ffa450edef68

a1ef30396e36d54a6e5aceffd7d4e2d2cd30b464
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2c6e219c5af270297f8edce652e36e688769911f
1305194839
Gilles Sadowski
Class "RandomAdaptorTest" needlessly inherited from "RandomDataTest".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1102229 13f79535-47bb-0310-9956-ffa450edef68

2c6e219c5af270297f8edce652e36e688769911f
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18c7ba81f954499e4ecabf902ebf1dbf4d42b0be
1305143862
Luc Maisonobe
Added field parameter on various constructors in Array2DRowFieldMatrix.
JIRA: MATH-573

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1102057 13f79535-47bb-0310-9956-ffa450edef68

18c7ba81f954499e4ecabf902ebf1dbf4d42b0be
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baa06c8feab274411ddb3948580d193dcab6e509
1305097067
Luc Maisonobe
Avoid some remaining array copying in ArrayFieldVector, AbstractFieldMAtrix and AbstractRealMatrix.
JIRA: MATH-573

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1101763 13f79535-47bb-0310-9956-ffa450edef68

baa06c8feab274411ddb3948580d193dcab6e509
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246031f184541646cebb9743a3a6675ad29f1e5e
1305051576
Luc Maisonobe
Avoid some array copying in add and subtract ArrayFieldVector.
JIRA: MATH-573

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1101579 13f79535-47bb-0310-9956-ffa450edef68

246031f184541646cebb9743a3a6675ad29f1e5e
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fb3c9ff347d2ee7011938da72a565f03a3d4756e
1305050947
Luc Maisonobe
Fixed an unused constructor parameter in ArrayFieldVector.
JIRA: MATH-572

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1101575 13f79535-47bb-0310-9956-ffa450edef68

fb3c9ff347d2ee7011938da72a565f03a3d4756e
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c11f2191d564ab50dbe5bb0aa521a1af3fe65d00
1304949274
Gilles Sadowski
MATH-566
Changed all exception classes to use the new "ExceptionContext".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1101029 13f79535-47bb-0310-9956-ffa450edef68

c11f2191d564ab50dbe5bb0aa521a1af3fe65d00
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c00ac8120a4215125e49775cd9351e689586b467
1304624488
Luc Maisonobe
Fixed conversion problems to/from 0 in Decimal Floating Point (Dfp) class.

JIRA: MATH-567

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1099938 13f79535-47bb-0310-9956-ffa450edef68

c00ac8120a4215125e49775cd9351e689586b467
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804309e5c5726ad22b0c74dfccdb1ed318f0a108
1304599051
Gilles Sadowski
MATH-566
Created "ExceptionContext" class.
Made "MathIllegalArgumentException" inherit from the Java standard
"IllegalArgumentException".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1099771 13f79535-47bb-0310-9956-ffa450edef68

804309e5c5726ad22b0c74dfccdb1ed318f0a108
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61a188be8961fff8d8ffaa167b2bb883b664691e
1304104089
Phil Steitz
Reuse is one word :).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1097918 13f79535-47bb-0310-9956-ffa450edef68

61a188be8961fff8d8ffaa167b2bb883b664691e
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7326a39c667089dfeb8c53cdc87c0159e0191644
1304097359
Luc Maisonobe
Fixed initialization of multistep ODE integrators. Relying on the interpolation model of the starter integrator inside only one step was wrong. The model may have a too low order to compute high degrees derivatives in the Nordsieck vector. Now we use several steps and use only grid points instead of interpolated points.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1097891 13f79535-47bb-0310-9956-ffa450edef68

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a6d59fd6cce9d005b24951368f516659205ca3da
1304066918
Luc Maisonobe
Added solve methods using double[][] to linear algebra decomposition solvers.

JIRA: MATH-564

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1097730 13f79535-47bb-0310-9956-ffa450edef68

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d20bc8c675b414381104d3700361a45988872ea9
1304004214
Gilles Sadowski
Doc fix (description of release 2.2 was missing).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1097502 13f79535-47bb-0310-9956-ffa450edef68

d20bc8c675b414381104d3700361a45988872ea9
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7b346ee2613958afd2f3657721496be4aff2a1a5
1303998803
Gilles Sadowski
Doc fix.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1097462 13f79535-47bb-0310-9956-ffa450edef68

7b346ee2613958afd2f3657721496be4aff2a1a5
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a303f3b8c90d39d1f84b19af9131b5c69c60eafc
1303991831
Gilles Sadowski
MATH-562
Interpolator adapter for periodic data.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1097426 13f79535-47bb-0310-9956-ffa450edef68

a303f3b8c90d39d1f84b19af9131b5c69c60eafc
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f34a8dcf4e43e1276e5f3f55b2dcbecf1552928b
1303989786
Gilles Sadowski
Added "@Retry" annotations.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1097418 13f79535-47bb-0310-9956-ffa450edef68

f34a8dcf4e43e1276e5f3f55b2dcbecf1552928b
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0270b669f756e397a0517281e4c3862d8ee60bd9
1303986420
Gilles Sadowski
Javadoc fix.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1097399 13f79535-47bb-0310-9956-ffa450edef68

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00ee0d140c76672459ec150d54f3e0b22ca9a925
1303983702
Gilles Sadowski
Unused (except in Javadoc) "import".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1097384 13f79535-47bb-0310-9956-ffa450edef68

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c3d3e5e627e9114b5227c299c0e04b8c9bfaf69e
1303907208
Gilles Sadowski
Replaced "Math" with "FastMath".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1097094 13f79535-47bb-0310-9956-ffa450edef68

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636dd19a9511e4a61a61780e873d27b81e2cd8df
1303905256
Gilles Sadowski
MATH-561
Map a value to the interval [O, period).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1097088 13f79535-47bb-0310-9956-ffa450edef68

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6393b4fdb83412026cc950c6f1b1eaa850213e7d
1303745292
Luc Maisonobe
Added a "rectangular" Cholesky decomposition for positive semidefinite matrices.

JIRA: MATH-541

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1096496 13f79535-47bb-0310-9956-ffa450edef68

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fdd43bac593dfdae8a4f55e3ff93c38a217df4ad
1303738681
Luc Maisonobe
fixed copy-paste error in javadoc
(hope to get it right this time ...)

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1096477 13f79535-47bb-0310-9956-ffa450edef68

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1303738499
Luc Maisonobe
grammar

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1096476 13f79535-47bb-0310-9956-ffa450edef68

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1303738307
Luc Maisonobe
expand javadoc to explain what Cholesky decomposition is

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1096473 13f79535-47bb-0310-9956-ffa450edef68

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909a315518040c9c7751bcb5e9acd75fc01d5cae
1303724749
Luc Maisonobe
Added setters allowing to change the step size control parameters of adaptive step size ODE integrators

Jira: MATH-563

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1096443 13f79535-47bb-0310-9956-ffa450edef68

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cbfae3eea94b47f64f86cdecef0397184b27f8cd
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Luc Maisonobe
Fixed misleading javadoc, the user supplied min and max step size are internally forced to positive and integration direction is handled later on. Asking for a positive step size was superfluous.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1096440 13f79535-47bb-0310-9956-ffa450edef68

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a10db780976b22c46b99624f6657be75b4c726b7
1302802656
Gilles Sadowski
Added (trivial) tests for NaNs.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1092402 13f79535-47bb-0310-9956-ffa450edef68

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1302631662
Luc Maisonobe
removed obsolete field

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1091526 13f79535-47bb-0310-9956-ffa450edef68

83ac3087ffd2b9dc4ecb68d6b6ebbe7c6e5a6431
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9efc28529ba8d6c514e12b949fa88a1f91f6692f
1302608780
Gilles Sadowski
MATH-559
Removed "assert" statements.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1091378 13f79535-47bb-0310-9956-ffa450edef68

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91c94b8ca9d5dade4f02b43edd67542a22076ea1
1302607742
Gilles Sadowski
Trailing spaces.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1091376 13f79535-47bb-0310-9956-ffa450edef68

91c94b8ca9d5dade4f02b43edd67542a22076ea1
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a503809218214ce23434b5787c1e4f3d85864ab2
1302602672
Gilles Sadowski
Javadoc.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1091358 13f79535-47bb-0310-9956-ffa450edef68

a503809218214ce23434b5787c1e4f3d85864ab2
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2be70c427bd6119b248601eb10fa66761b342c82
1302601262
Gilles Sadowski
Simplified test.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1091346 13f79535-47bb-0310-9956-ffa450edef68

2be70c427bd6119b248601eb10fa66761b342c82
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f082dd41658ea4c7ebbbea8886117a3ab5d14936
1302544972
Luc Maisonobe
make sure the test runs correctly even in a non-US environment

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1091153 13f79535-47bb-0310-9956-ffa450edef68

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573785a1cdd35971378c2f38c30d455897fe8a3b
1302543820
Luc Maisonobe
replaced remaining getEpsilon by using ulps in double comparisons

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1091143 13f79535-47bb-0310-9956-ffa450edef68

573785a1cdd35971378c2f38c30d455897fe8a3b
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afef5eea05b8a7395f5ee33726aa2113771215f4
1302451256
Luc Maisonobe
replaced the custom comparison method in SimplexSolver with the new MathUtils.compareTo(double, double, int) with maxUlps as the third parameter, as per Gilles advice.

Jira: MATH-434

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1090823 13f79535-47bb-0310-9956-ffa450edef68

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edf9205a6dc8c634985fa2f0e07a7ef598881fd9
1302451011
Luc Maisonobe
Added a compareTo method to MathUtils that uses a number of ulps as a tolerance error, and works well on all numbers, including normals, subnormals, signed zeroes, infinities and NaNs

Jira: MATH-557

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1090820 13f79535-47bb-0310-9956-ffa450edef68

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ad48588bf1bb3a6761a3a7d2582af672f4f2e3dc
1302376847
Luc Maisonobe
Fixed two errors in simplex solver when entries are close together or
when variables are not restricted to non-negative.

Jira: MATH-434

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1090656 13f79535-47bb-0310-9956-ffa450edef68

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97583abf386b585040c997498199c9167d553c4e
1302186788
Gilles Sadowski
Wrong chaining of constructors made the interesting message (indicating the maximal
count) disappear.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1089891 13f79535-47bb-0310-9956-ffa450edef68

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e3c25c933acbde46ca3c3e79b95f341c1cd963b1
1301982741
Phil Steitz
Changed to use, rathern than duplicate Realmatrix Frobenius norm.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1088902 13f79535-47bb-0310-9956-ffa450edef68

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1301981597
Phil Steitz
Javadoc only.

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Phil Steitz
Removed trailing space.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1088896 13f79535-47bb-0310-9956-ffa450edef68

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2e81ed7142126462546fd98135786a9adeb305f7
1301979233
Phil Steitz
Changed CMAESOptimizer constructors to copy, rather than reference array arguments.
JIRA: MATH-556




git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1088895 13f79535-47bb-0310-9956-ffa450edef68

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Phil Steitz
Javadoc only.

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730600535dd8cd252af3d0d6b5a807d5429d5e1c
1301941972
Luc Maisonobe
Improved robustness of k-means++ algorithm, by tracking changes in points assignments to clusters

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1088702 13f79535-47bb-0310-9956-ffa450edef68

730600535dd8cd252af3d0d6b5a807d5429d5e1c
:100644 100644 30b7ccb8cbd8e1042dfe59a568f75b103a7b4e3d 1b2ca057e66497ff85bb585e0928b6fd206ad287 M	src/main/java/org/apache/commons/math/stat/clustering/KMeansPlusPlusClusterer.java
:100644 100644 a953b91d24e1b42d6ffe1926a1d580ade1b93c18 c8b1ec95a9e2ea9ddd97ef88cf32272abad08c4a M	src/site/xdoc/changes.xml

ac8a7b2afd1892f76c4113a495a7dff828641aba
1301928205
Phil Steitz
Javadoc only.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1088647 13f79535-47bb-0310-9956-ffa450edef68

ac8a7b2afd1892f76c4113a495a7dff828641aba
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58c073d66c48d0f3d91ac41d5fe887011724c42f
1301892697
Phil Steitz
Changed MathUtils.round(double,int,int) to propagate rather than
wrap runtime exceptions.  Instead of MathRuntimeException, this method
now throws IllegalArgumentException or ArithmeticException under
the conditions specified in the javadoc.
JIRA: MATH-555




git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1088473 13f79535-47bb-0310-9956-ffa450edef68

58c073d66c48d0f3d91ac41d5fe887011724c42f
:100644 100644 85d9a048fe38da151dee5d37c0a3121e766ae02d 52ebeb6ea9738aef3a5a70d9f3fdf2c7bcca4bb2 M	src/main/java/org/apache/commons/math/util/MathUtils.java
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:100644 100644 d446bc7209ee90d160e7c82684ccb00d8217165e d03efbbaae823873b7acdfc837e630646ce4694b M	src/test/java/org/apache/commons/math/util/MathUtilsTest.java

0c38504ffa3ef520ce78e260538d7b8742c895e8
1301841209
Luc Maisonobe
Reduced cancellation errors in Vector3D.crossProduct

Jira: MATH-554

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1088316 13f79535-47bb-0310-9956-ffa450edef68

0c38504ffa3ef520ce78e260538d7b8742c895e8
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:100644 100644 1a80543ef9b8670148bc1e92ddb142e3f8d12b29 4dc474c62efb1fe06663bfa50626c658a9e6286e M	src/test/java/org/apache/commons/math/geometry/Vector3DTest.java

3114d4ed4654f54fc1ee8e3c3da5b6cd1cd2cc87
1301841180
Luc Maisonobe
allow 3 retries for testNextHex which is expected to randomly fail with low probability

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1088315 13f79535-47bb-0310-9956-ffa450edef68

3114d4ed4654f54fc1ee8e3c3da5b6cd1cd2cc87
:100644 100644 e7d3626bc554476739898b136ddc965f96d34d41 49652050879170d124ce00ce22e2d11bc577073e M	src/test/java/org/apache/commons/math/random/RandomDataTest.java

e06fe05e2dd68936e770ba67caa7b9924568170d
1301652618
Gilles Sadowski
MATH-552
Fixed bug in "MultidimensionalCounter". Thanks to James Bence.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1087637 13f79535-47bb-0310-9956-ffa450edef68

e06fe05e2dd68936e770ba67caa7b9924568170d
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:100644 100644 5c0e1d92de1a568968cc206955383448978897e2 72035c1a9bf494e7c21581a336bb3e31294dc835 M	src/site/xdoc/changes.xml
:100644 100644 827030df33724ef7f738f15ef1167e499ba54c3a a3110b99a2ddf510fc656115f046fdf1c4aa437d M	src/test/java/org/apache/commons/math/util/MultidimensionalCounterTest.java

d773adb1228299c05ae9abbacf2f3616e9a170e0
1301649893
Gilles Sadowski
MATH-549
Reverted changes performed in revision 1086057.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1087630 13f79535-47bb-0310-9956-ffa450edef68

d773adb1228299c05ae9abbacf2f3616e9a170e0
:100644 100644 535c11b8f42308d34533c416985199f15143ce36 dab4229b7e3d20d02b4ce5d4b59338ed78033c26 M	src/main/java/org/apache/commons/math/stat/correlation/PearsonsCorrelation.java
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a82b8f84bd1662c15402bb7310b5fece9b98e0ca
1301394517
Gilles Sadowski
MATH-423
The "@Retry" annotation allows to select the number of retries of a
Junit test method (provided that the test class is itself annotated
with "@RunWith(RetryRunner.class).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1086539 13f79535-47bb-0310-9956-ffa450edef68

a82b8f84bd1662c15402bb7310b5fece9b98e0ca
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1fe3ea766d70c61b847768be7eddf2a68ffd5d93
1301263578
Gilles Sadowski
MATH-549
Method can be "static".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1086057 13f79535-47bb-0310-9956-ffa450edef68

1fe3ea766d70c61b847768be7eddf2a68ffd5d93
:100644 100644 dab4229b7e3d20d02b4ce5d4b59338ed78033c26 535c11b8f42308d34533c416985199f15143ce36 M	src/main/java/org/apache/commons/math/stat/correlation/PearsonsCorrelation.java
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a09f995a26e4ca8ab69c08174b3699f0459e9bfc
1301262691
Gilles Sadowski
MATH-551
Modified "MathRuntimeException" class such that "SerializablePair" class has
become unnecessary.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1086045 13f79535-47bb-0310-9956-ffa450edef68

a09f995a26e4ca8ab69c08174b3699f0459e9bfc
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117852d0700155e12e96564574c75814893ad7a9
1301245650
Mikkel Meyer Andersen
Javadoc fixes (added missing parameter documentations, removed documentation for non-existing parameter, and newline cleanup)

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1085989 13f79535-47bb-0310-9956-ffa450edef68

117852d0700155e12e96564574c75814893ad7a9
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dde7ece858a1686878c1b2cd8f438d5a0ebebf87
1301243521
Luc Maisonobe
fixed checkstyle warnings (no functional changes)

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1085981 13f79535-47bb-0310-9956-ffa450edef68

dde7ece858a1686878c1b2cd8f438d5a0ebebf87
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dadc73201f4c02962920d43ddfd5580a2760c46c
1301243450
Luc Maisonobe
updated findbugs exceptions after 3.0 API changes

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1085980 13f79535-47bb-0310-9956-ffa450edef68

dadc73201f4c02962920d43ddfd5580a2760c46c
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617b0617e21ddaf2a509ce52ffef92a8071d45fb
1301239209
Luc Maisonobe
fixed javadoc warnings

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1085962 13f79535-47bb-0310-9956-ffa450edef68

617b0617e21ddaf2a509ce52ffef92a8071d45fb
:100644 100644 b22e90b6df3ad955f10302ddb3f656e8805f5f49 f29988274af638fb4daea185b77624e0e7ca3a13 M	src/main/java/org/apache/commons/math/stat/inference/MannWhitneyUTest.java
:100644 100644 d4b553e0c3cbf30185c6fb7da64f44e095fce602 0e0953a888b7cbe84bf618a12531f9c4774ca1fc M	src/test/java/org/apache/commons/math/distribution/PoissonDistributionTest.java

0e62a375dd5b34138399a4e5097e331c6336e8d2
1301238912
Luc Maisonobe
announced resolution of MATH-423

Jira: MATH-423

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1085961 13f79535-47bb-0310-9956-ffa450edef68

0e62a375dd5b34138399a4e5097e331c6336e8d2
:100644 100644 d69dff3ec7e2864f2ddd84bb620316dff21ba034 5c0e1d92de1a568968cc206955383448978897e2 M	src/site/xdoc/changes.xml

d3064e5e6f74cfcedaaebca4391fa3a15d114cb3
1301238689
Luc Maisonobe
upgrated commons-parent pom to v20

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1085958 13f79535-47bb-0310-9956-ffa450edef68

d3064e5e6f74cfcedaaebca4391fa3a15d114cb3
:100644 100644 b532bd956fe3a2a6364f71a20d191bab3a372465 dfbe6204f6c6aba2dd41cd5cc73ed39dad798b22 M	pom.xml

43dd0dc99f9f3ebc0790e62dbc6aa9f849c85a14
1301238167
Luc Maisonobe
Implemented a retry policy for tests that may randomly fail.

Tests classes that may fail should be annotated with @RunWith(RetryRunner.class). This custom test runner attempts to re-run tests that fail, up to a maximum number of attempts defined as a constant in the test runner (currently set to 3 attempts max).

Jira: MATH-423

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1085954 13f79535-47bb-0310-9956-ffa450edef68

43dd0dc99f9f3ebc0790e62dbc6aa9f849c85a14
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9ddd3db85525a2912add6e3bd67c760037891aab
1301237939
Luc Maisonobe
upgraded Junit version to 4.8.2.

This brings maven build up to date with respect to ant build, which already uses 4.8.2.
It will allow implementing a retry policy for the few tests that can randomly fail, using API introduced in Junit 4.5.

JIRA: MATH-423

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1085952 13f79535-47bb-0310-9956-ffa450edef68

9ddd3db85525a2912add6e3bd67c760037891aab
:100644 100644 9d9bbd8521829b5e0424d3d0f07f9e8e4754030f b532bd956fe3a2a6364f71a20d191bab3a372465 M	pom.xml

472ef54ac6016140ece62aa8e5a6e8e91057021c
1300913849
Luc Maisonobe
removed unused import

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1084735 13f79535-47bb-0310-9956-ffa450edef68

472ef54ac6016140ece62aa8e5a6e8e91057021c
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b6889fc7451b3ea4c5b8c8271db0dc612df006b6
1300910014
Luc Maisonobe
removed deprecated code

JIRA: MATH-438

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1084700 13f79535-47bb-0310-9956-ffa450edef68

b6889fc7451b3ea4c5b8c8271db0dc612df006b6
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2fdf5aae5d47b853112e4b51551f6c8e1350903b
1300908964
Luc Maisonobe
Removed the ConvergingAlgorithm interface and ConvergingAlgorithmImpl class

JIRA: MATH-500

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1084690 13f79535-47bb-0310-9956-ffa450edef68

2fdf5aae5d47b853112e4b51551f6c8e1350903b
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Luc Maisonobe
removed unused method in private internal class

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Luc Maisonobe
removed unneeded @SuppressWarning

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Luc Maisonobe
added missing serialVersionUID

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Luc Maisonobe
fixed call to deprecated method

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Luc Maisonobe
removed unused field

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Luc Maisonobe
removed unused import

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Luc Maisonobe
removed unused variables

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Luc Maisonobe
fixed varargs declaration warnings

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Luc Maisonobe
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Luc Maisonobe
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Mikkel Meyer Andersen
MATH-437
Converted R-script used for generating JUnit test-cases to JUnit 4.


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Mikkel Meyer Andersen
Added entry in changes.xml for MATH-437 which introduces the two sided Kolmogorov-Smirnov distribution

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Mikkel Meyer Andersen
Added entry in changes.xml for MATH-435 which introduces power methods for RealMatrix and FieldMatrix<T>

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Sebastian Bazley
Convert to Junit4

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Mikkel Meyer Andersen
Updated references in code that fixes MATH-437

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Mikkel Meyer Andersen
Unused import removed

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Mikkel Meyer Andersen
(Too) poor javadoc for MATH-437 improved

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Mikkel Meyer Andersen
Remove invalid @Override annotation

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Mikkel Meyer Andersen
Remove invalid @Override annotation

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Mikkel Meyer Andersen
Fixes MATH-437

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Mikkel Meyer Andersen
Fixes MATH-435 for FieldMatrix<T>, too.

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Mikkel Meyer Andersen
Insert missing @Test annotation

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Mikkel Meyer Andersen
Remove @Override for consistency

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Mikkel Meyer Andersen
Fixes MATH-437

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1300641854
Luc Maisonobe
Converted tests to Junit4.

There is one thing remaining: the retry feature in RetryTestCase has been disabled temporarily. We need to find some way to implement it using Junit 4 API.

JIRA: MATH-423

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6be2ee94faa0b73f4d9b19335a48fb6ca90af9a4
1300574999
Gilles Sadowski
MATH-446
Removed checked exceptions.
Some Javadoc cleanup.
Tests upgraded to Junit 4 (MATH-423).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1083323 13f79535-47bb-0310-9956-ffa450edef68

6be2ee94faa0b73f4d9b19335a48fb6ca90af9a4
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3dc361920534bd229d7e561607c298119bde4843
1300536271
Gilles Sadowski
MATH-487
Removed checked exceptions.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1083167 13f79535-47bb-0310-9956-ffa450edef68

3dc361920534bd229d7e561607c298119bde4843
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df9e8636aae7c84e8c167c184903f9355031f955
1300536124
Gilles Sadowski
New API (MATH-542).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1083166 13f79535-47bb-0310-9956-ffa450edef68

df9e8636aae7c84e8c167c184903f9355031f955
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cc71409e1ca1a9dd5d4dd3946d14fdf9df2ea0db
1300358299
Gilles Sadowski
MATH-545
Added "cosine" method in "RealVector" interface and default implementation
in "AbstractRealVector".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1082442 13f79535-47bb-0310-9956-ffa450edef68

cc71409e1ca1a9dd5d4dd3946d14fdf9df2ea0db
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9ee6eef8a6cb86f6a0900aa366b1a7d3cebef1c9
1300273625
Gilles Sadowski
MATH-542
Removed unnecessary method, as the case is taken care of with the other
"addMessage" method (with varargs).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1082124 13f79535-47bb-0310-9956-ffa450edef68

9ee6eef8a6cb86f6a0900aa366b1a7d3cebef1c9
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00fea9d8078d487e31cec8292dbd9bd69bc9c216
1300191302
Gilles Sadowski
MATH-546
Wrong  variable type ("int" instead of "double").


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1081744 13f79535-47bb-0310-9956-ffa450edef68

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d3892cb85f3eb8ccadada228b791170e3e0a9124
1300189343
Gilles Sadowski
MATH-542
Allow to "addMessage" without arguments (avoiding the need to explicitly
pass "null").


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1081741 13f79535-47bb-0310-9956-ffa450edef68

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712c03fd73c9f47ed3f37a66b091c0c59b53e4a9
1299853435
Gilles Sadowski
Removed trailing spaces.


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712c03fd73c9f47ed3f37a66b091c0c59b53e4a9
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ce645cc74093f45fa5efd99d3e2e7272e0d8142b
1299852239
Gilles Sadowski
MATH-503
Added parametric version of the "Logistic" function.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1080571 13f79535-47bb-0310-9956-ffa450edef68

ce645cc74093f45fa5efd99d3e2e7272e0d8142b
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2636e96ca275be309b1a23fb366c96a86bddcef1
1299765932
Gilles Sadowski
MATH-542
Added custom "writeObject" and "readObject" so that serialization can
proceed even if non-"Serializable" objects are stored (in messages
arguments or context values).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1080231 13f79535-47bb-0310-9956-ffa450edef68

2636e96ca275be309b1a23fb366c96a86bddcef1
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2b285b171ce58f540579cb384907b6bf921da971
1299697470
Gary D. Gregory
Ignore resources generated by Maven eclipse:eclipse

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1079938 13f79535-47bb-0310-9956-ffa450edef68

2b285b171ce58f540579cb384907b6bf921da971
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1299697301
Gary D. Gregory
Follow branding reqs from http://www.apache.org/foundation/marks/pmcs#graphics

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e1b72240df290160c98083cbbe684efbabad719b
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73a294317715c5be5c06e1f50ea2e1dc2ac7c9a2
1299618588
Gilles Sadowski
[Previous commit was a mistake.]
Created a "SerializablePair" for use in "MathRuntimeException".
Uncommented the test in "DummyStepInterpolatorTest".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1079545 13f79535-47bb-0310-9956-ffa450edef68

73a294317715c5be5c06e1f50ea2e1dc2ac7c9a2
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497c1f4c0c78a60276788ba13b05117892de6d24
1299616934
Gilles Sadowski
Removed unused message.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1079528 13f79535-47bb-0310-9956-ffa450edef68

497c1f4c0c78a60276788ba13b05117892de6d24
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82ff5d19ceb6137cd8c4f2ddd94b8b7b6e69a20d
1299616360
Gilles Sadowski
MATH-403
Added "CheckNotNull" methods.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1079519 13f79535-47bb-0310-9956-ffa450edef68

82ff5d19ceb6137cd8c4f2ddd94b8b7b6e69a20d
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7ff75d7c381a5f715facf0ee894d9a87ea2ad603
1299591736
Gilles Sadowski
MATH-544
Matrix exception classes moved back to package "linear". Removed unnecessary
"import" statements, fixed Javadoc and unit tests and upgraded them to
JUnit 4 (MATH-423).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1079350 13f79535-47bb-0310-9956-ffa450edef68

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269eb5115be78b2f21a3e2eead23a38d5d17dfe5
1299497358
Gilles Sadowski
MATH-542
Class is not used anymore.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1078746 13f79535-47bb-0310-9956-ffa450edef68

269eb5115be78b2f21a3e2eead23a38d5d17dfe5
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a763f3e708b12b95039ba6c5a9e969c985373a34
1299494272
Gilles Sadowski
MATH-542
"MathRuntimeException" provides two ways for enhancing the information content:
one for localized messages and one for storing "context" objects.
The additional methods have been added to "MathThrowable". Consequently, dummy
implementations were needed in the old "MathRuntimeException" and
"MathException".
Some parts of the tests for old exceptions were removed as they used methods
that were deleted. A call to "MathUserException" in "AbstractContinuousDistribution"
was simplified for the same reason.
"MathUtils" still contained "String" (instead of "Localizable") as argument to
the constructor of a "MathArithmeticException".
I don't know why a test in "DummyStepInterpolatorTest" stopped working. It is now
commented out; please have a look.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1078734 13f79535-47bb-0310-9956-ffa450edef68

a763f3e708b12b95039ba6c5a9e969c985373a34
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455c730d72196d65a215413f56b9c644779937f2
1299417883
Sebastian Bazley
Alternate solution: remove shadowing by removing copies (since class is not static)

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1078466 13f79535-47bb-0310-9956-ffa450edef68

455c730d72196d65a215413f56b9c644779937f2
:100644 100644 9002b9c5369b0914a6469568949559312f76f4eb e803a703676c60968731ef9e174018b259fbdb51 M	src/main/java/org/apache/commons/math/optimization/direct/CMAESOptimizer.java

6f04c3eec5c5c63d981c5e46e276c3946874f6b5
1299409103
Sebastian Bazley
Rename private variables to avoid name shadowing

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1078445 13f79535-47bb-0310-9956-ffa450edef68

6f04c3eec5c5c63d981c5e46e276c3946874f6b5
:100644 100644 a9b90d04563828522731e5f9cd28d30755216ec0 9002b9c5369b0914a6469568949559312f76f4eb M	src/main/java/org/apache/commons/math/optimization/direct/CMAESOptimizer.java

0737474412b4ba7868b6855ed61202820e5cc5f8
1299409031
Sebastian Bazley
Make write-once private fields final

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1078444 13f79535-47bb-0310-9956-ffa450edef68

0737474412b4ba7868b6855ed61202820e5cc5f8
:100644 100644 fd73c2ef82d0a13dcb32993c9c63406ecfcbe46a a9b90d04563828522731e5f9cd28d30755216ec0 M	src/main/java/org/apache/commons/math/optimization/direct/CMAESOptimizer.java

6541d69ee80dfeebeac1e5fd4168ff91b0e8a0b6
1299408513
Sebastian Bazley
Javadoc @see cannot have trailing text after </a>

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1078443 13f79535-47bb-0310-9956-ffa450edef68

6541d69ee80dfeebeac1e5fd4168ff91b0e8a0b6
:100644 100644 3f2a764cf02ec62190332a25752c0ed7e4cd00d2 fd73c2ef82d0a13dcb32993c9c63406ecfcbe46a M	src/main/java/org/apache/commons/math/optimization/direct/CMAESOptimizer.java

2a73e3e14344d7d4de37e00a405e2e44ac75c5f1
1299376072
Sebastian Bazley
Unused imports

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1078397 13f79535-47bb-0310-9956-ffa450edef68

2a73e3e14344d7d4de37e00a405e2e44ac75c5f1
:100644 100644 155e4c32de1a03bbd2781fa14ede02e81516c24f 4e33e73212310d2fc3a409702e76854b48b64127 M	src/test/java/org/apache/commons/math/analysis/function/HarmonicOscillatorTest.java
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:100644 100644 135bfaf276666ba95aecb2eb97ed03aa17cf895b b51f4436f9996499228f2e763c72e0c7737cb2a9 M	src/test/java/org/apache/commons/math/stat/FrequencyTest.java
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a66b9fb3eeed07e2f64b2e78d27ded69f329990c
1299169455
Sebastian Bazley
Oops - wrong issue terminator

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1076666 13f79535-47bb-0310-9956-ffa450edef68

a66b9fb3eeed07e2f64b2e78d27ded69f329990c
:100644 100644 5fc35bfec26ee486c74579a175891ed8cbd5c8e9 975bdd1b515efc5ebe5d0ccb8ca8e4e652d082d8 M	src/main/resources/templates/math-release-notes.vm

beb40e7157e35c16105e220389ababe558960469
1298984532
Gilles Sadowski
Typos.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1075803 13f79535-47bb-0310-9956-ffa450edef68

beb40e7157e35c16105e220389ababe558960469
:100644 100644 d599ca6a4837bce4212a98194d7e97bbca7dfcd8 ed4a8592170eb142a7f6a6e38d8777ba5f983306 M	src/main/java/org/apache/commons/math/analysis/function/Logit.java
:100644 100644 433e2744b6beffc546ba606b157c4118aeb957ec 4ea2d3faec2dd09b29558565dba9f874c616ae13 M	src/main/java/org/apache/commons/math/analysis/function/Sigmoid.java

96bb48851f62d3c0718925f822676c96fa5a7816
1298929370
Gilles Sadowski
Updated "changes.xml".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1075552 13f79535-47bb-0310-9956-ffa450edef68

96bb48851f62d3c0718925f822676c96fa5a7816
:100644 100644 fd290d1e3e308ab181f2f60fbf0a8a0cab45ecce 9db68f9fdf72e6c29ddbf15badd9e8f8639b6abf M	src/site/xdoc/changes.xml

fb84d9ca198c41cc85d71d0be7540881362fae47
1298928753
Gilles Sadowski
MATH-503
Added derivative function.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1075544 13f79535-47bb-0310-9956-ffa450edef68

fb84d9ca198c41cc85d71d0be7540881362fae47
:100644 100644 aa14a4099393d2b59bdfa5d188b5b87407fa2fd3 7b53299ca15f878deb94f2fa293e5b94e53ff2a2 M	src/main/java/org/apache/commons/math/analysis/function/Logistic.java
:100644 100644 e6ffcc5d19fa6bc605941d517dd00bd6986d18dc 56b56d0ade5416e5b25ecf639d54c192a9b81d23 M	src/test/java/org/apache/commons/math/analysis/function/LogisticTest.java

feb43d631efa5fef4c842f6ba02e417e555293a2
1298813507
Gilles Sadowski
MATH-534
Refactored "PolynomialFitter". Moved parametric function inner class to
"PolynomialFunction".
Adapted affected classes.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1075054 13f79535-47bb-0310-9956-ffa450edef68

feb43d631efa5fef4c842f6ba02e417e555293a2
:100644 100644 b2d723db9f7ed3631b05e029608b0d0df9e738dd cfc5f0a0430946c3267060737b30c2e296051aab M	src/main/java/org/apache/commons/math/analysis/interpolation/SmoothingPolynomialBicubicSplineInterpolator.java
:100644 100644 15a736c513d2fce370901e985e8244bb4a2b3aec 43d8d3e355b427bcac2bac87fddbe81256c8e5c4 M	src/main/java/org/apache/commons/math/analysis/polynomials/PolynomialFunction.java
:100644 100644 97f23c2c4810363200120a9321dd3100486ce966 6711f086b8e26bb438be47fc79cf541f969893a1 M	src/main/java/org/apache/commons/math/optimization/fitting/PolynomialFitter.java
:100644 100644 2c6af100ababc3020a1b1f2a4bdcb39bbe3ed502 b3741ab1616601fc7eda89fc49a653600a70b3eb M	src/test/java/org/apache/commons/math/optimization/fitting/PolynomialFitterTest.java

623ba574065bd409789968951c7060904cdaccb4
1298811490
Gilles Sadowski
MATH-536
Simplified string representation (when a coefficient is an integer number).
Upgraded unit tests to JUnit 4.
Code and Javadoc formatting clean-up.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1075048 13f79535-47bb-0310-9956-ffa450edef68

623ba574065bd409789968951c7060904cdaccb4
:100644 100644 927fefd66c3dd0f58f04e73627d277e5a4fd69ef 15a736c513d2fce370901e985e8244bb4a2b3aec M	src/main/java/org/apache/commons/math/analysis/polynomials/PolynomialFunction.java
:100644 100644 5686a3ce75c9e8652535701ac3e82a7dbbb85712 589972360134b9f0f144bd3ab464d7af332c3438 M	src/test/java/org/apache/commons/math/analysis/polynomials/PolynomialFunctionTest.java
:100644 100644 cb6f27464c0ce75878780ba7b3aa2b7d79fdd98c 8b35abc71ac59ff136b7617a5b11a23cd02f2e12 M	src/test/java/org/apache/commons/math/analysis/polynomials/PolynomialsUtilsTest.java

ef98fd3e395dd5386eac424d306274ef1f878b78
1298810508
Gilles Sadowski
Minor change in tolerance setting.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1075040 13f79535-47bb-0310-9956-ffa450edef68

ef98fd3e395dd5386eac424d306274ef1f878b78
:100644 100644 913cab34f532646c8eef9b881bf2aba1cddc25a2 7d5c568586c157dfeb67958bbe610aac9554c7f4 M	src/test/java/org/apache/commons/math/analysis/function/LogitTest.java

a1fe354a0740b2c6d12accfd7ec6fd756d469000
1298762924
Sebastian Bazley
It's somewhat easier to read PDF rather than PostScript (even for mathematicians)...

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1074959 13f79535-47bb-0310-9956-ffa450edef68

a1fe354a0740b2c6d12accfd7ec6fd756d469000
:100644 100644 b635180363122a1109610cf1fe9687cf73234f98 7af26dcbb393d692e43acf696feaa97c1ede3022 M	src/site/xdoc/developers.xml

988e7849106ba7c3e0718361942b3d6e10c4c276
1298761669
Gilles Sadowski
MATH-503
"Logit" function.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1074954 13f79535-47bb-0310-9956-ffa450edef68

988e7849106ba7c3e0718361942b3d6e10c4c276
:000000 100644 0000000000000000000000000000000000000000 d599ca6a4837bce4212a98194d7e97bbca7dfcd8 A	src/main/java/org/apache/commons/math/analysis/function/Logit.java
:000000 100644 0000000000000000000000000000000000000000 913cab34f532646c8eef9b881bf2aba1cddc25a2 A	src/test/java/org/apache/commons/math/analysis/function/LogitTest.java

b3bc2b5b62e1747cdf5a9bc5ef66ca6aa23e6676
1298761507
Gilles Sadowski
Eliminated "Findbugs" warnings.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1074951 13f79535-47bb-0310-9956-ffa450edef68

b3bc2b5b62e1747cdf5a9bc5ef66ca6aa23e6676
:100644 100644 409769cf81db943923d18303cb98dbe054edc887 edbeb9d9ce9ea28df3a18f095364ae825b179591 M	src/main/java/org/apache/commons/math/exception/MathParseException.java

f6393a23de71838b4cefff78eaee102d013e0d94
1298761139
Gilles Sadowski
MATH-503
Added derivative and parametric version of the function.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1074950 13f79535-47bb-0310-9956-ffa450edef68

f6393a23de71838b4cefff78eaee102d013e0d94
:100644 100644 28f788265f7ee6b4dd04e6e77a126ef08b93385a 433e2744b6beffc546ba606b157c4118aeb957ec M	src/main/java/org/apache/commons/math/analysis/function/Sigmoid.java
:100644 100644 0daddb14062dd7aa7c4a3f174396ebe65979e31a 311767c0eec7afa69d54f87fe3d0495590bdbf9f M	src/test/java/org/apache/commons/math/analysis/function/SigmoidTest.java

3ae7cd3a4eba69c012b9ee22ce5de25624bff0f1
1298637808
Sebastian Bazley
Simplify release notes generation

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1074503 13f79535-47bb-0310-9956-ffa450edef68

3ae7cd3a4eba69c012b9ee22ce5de25624bff0f1
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Sebastian Bazley
Eol-style

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Luc Maisonobe
fixed version property for Nexus

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1298582373
Luc Maisonobe
fixed a nasty bug with atan2 that occurred only with some Java 1.5 virtual machines

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1298565336
Gilles Sadowski
Wrong function.


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1298550521
Sebastian Bazley
Give the changes output file the correct name

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1298476358
Gilles Sadowski
MATH-521
Changed initial guess default values.
Added test.


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1298474119
Gilles Sadowski
Wrong call.


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45add3a0e7e2e94bfc29e85c9ef0856e2e473a33
1298418646
Gilles Sadowski
MATH-519
Workaround exception generated when the optimizer tries invalid values for
the "sigma" parameter.
Added a method to allow the user to pass his own initial guess.


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1298416080
Gilles Sadowski
MATH-518
Superseded by "HarmonicOscillator" in package "analysis.function".


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1298404375
Luc Maisonobe
added missing @since tags
JIRA: MATH-533

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Luc Maisonobe
added missing @since tags
JIRA: MATH-532

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1298403332
Luc Maisonobe
added missing @since tags
JIRA: MATH-531

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1298403036
Luc Maisonobe
added missing @since tag
JIRA: MATH-530

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1298402271
Luc Maisonobe
added missing @since tags
JIRA: MATH-529

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1298391236
Gilles Sadowski
MATH-517
"HarmonicFitter" refactored to include the functionality of
"HarmonicCoefficientsGuesser" as an inner class, and now using
"HarmonicOscillator" (from package "analysis.function") instead of
"HarmonicFunction" (from package "optimization.fitting").


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1298388860
Gilles Sadowski
MATH-518
Created new function object to replace "HarmonicFunction" (in package
"optimization.fitting").


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1298372933
Sebastian Bazley
Fail on error, rather than printing to stdout

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1298367334
Luc Maisonobe
added missing @since

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Luc Maisonobe
added missing @since

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Luc Maisonobe
added missing @since

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1298365392
Luc Maisonobe
fixed the since message to show the getSparsity has been introduced in 2.2

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1298326071
Luc Maisonobe
fixed @since comment, the class was added in 2.2 not in 2.1

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1298298368
Sebastian Bazley
Update to JUnit 4.8.2
Avoid warnings about includeAntRuntime
Generate text output for unit tests

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f0ad696494f2fd1913feb6a33d54e8e09ef744d9
1298074772
Gilles Sadowski
MATH-516
Removed "GaussianFunction" and "GaussianDerivativeFunction" (superseded by
class "Gaussian (in package "analysis.function").


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c9240a2535ac3ebeb0b1b8fdbaa3ab44ca56413b
1298073826
Gilles Sadowski
MATH-514
Removed "ParametricGaussianFunction" (superseded by "Gaussian.Parametric"
in package "analysis.function").


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a5bad2bba2c1901b356f984b56bc5c0bf23e7d59
1298072581
Gilles Sadowski
MATH-512
Functionality moved to "GaussianFitter.ParameterGuesser" inner class.


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19a21f531697627f3cf49482796884763a6c74ba
1298047557
Gilles Sadowski
MATH-512
Refactoring of the "GaussianFitter" class by Ole Ersoy.


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ba96c9afd8f42adb6abc9d5e447bec823c95db88
1297948200
Gilles Sadowski
MATH-442
Implementation of the CMA-ES optimization algorithm provided by Dietmar Wolz
and Nikolaus Hansen.


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81648e8ecac4fa6b931be235a918488e70ad43c0
1297946633
Gilles Sadowski
MATH-515
"copyOf" methods (for "int" and "double" arrays).


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ff921dd92402696c90042c44a7e932445695aa2c
1297896523
Gilles Sadowski
MATH-514
Added a "Parametric" inner class.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1071430 13f79535-47bb-0310-9956-ffa450edef68

ff921dd92402696c90042c44a7e932445695aa2c
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3d4d0641c250deb07e9f553d44ab21df67b8b8c8
1297896347
Gilles Sadowski
MATH-513
Renamed "o.a.c.math.optimization.fitting.ParametricRealFunction" to
"o.a.c.math.analysis.ParametricUnivariateRealFunction". Modified all
affected files.


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1905a9ed2482084911869a4efc4dc252f00f0d82
1297727650
Gilles Sadowski
MATH-511
Implement "DifferentiableUnivariateRealFunction".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1070698 13f79535-47bb-0310-9956-ffa450edef68

1905a9ed2482084911869a4efc4dc252f00f0d82
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39ce9a1b48cf474bb981d64c1ee8c59836f3d7b1
1297693195
Luc Maisonobe
second attempt at fixing MATH-484
This fixes bad behavior when several events occur during a long step
This also fixes bad behavior when events are triggered during backward integration
Jira: MATH-484

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1070499 13f79535-47bb-0310-9956-ffa450edef68

39ce9a1b48cf474bb981d64c1ee8c59836f3d7b1
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1297372073
Luc Maisonobe
fixed checkstyle and findbugs warnings

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9bd8d5c6939d29fe53d51ff9c55ed13ae29a23cc
1297077462
Gilles Sadowski
MATH-503
Added gaussian function.
Added "package.html" doc file.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1067917 13f79535-47bb-0310-9956-ffa450edef68

9bd8d5c6939d29fe53d51ff9c55ed13ae29a23cc
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b8b6e229e5b2d2588f90ca57f4d5f9a7d5e00025
1296971019
Phil Steitz
Corrected javadoc link.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1067593 13f79535-47bb-0310-9956-ffa450edef68

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2cbace2fe3b8170aee3194927ee95fcdd6b63dff
1296970462
Phil Steitz
Added correlated vector generation example.

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2cbace2fe3b8170aee3194927ee95fcdd6b63dff
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683059120457a48965db2f398d56577c15925170
1296910465
Sebastian Bazley
MATH-506 - revert r1067433 as it is incomplete; more discussion needed

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683059120457a48965db2f398d56577c15925170
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360cb76910528768731db11f39c7cffd7c3187b3
1296909996
Sebastian Bazley
MATH-506 The static field ChiSquareTestImpl.distribution serves no purpose.

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360cb76910528768731db11f39c7cffd7c3187b3
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15c12f11dd69208683d863444b524e26bab59006
1296852221
Gilles Sadowski
MATH-442
Waiting for paperwork.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1067278 13f79535-47bb-0310-9956-ffa450edef68

15c12f11dd69208683d863444b524e26bab59006
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071da06f993503cbdab51c7b0e5ea1d03540eb7f
1296842909
Gilles Sadowski
Bitten again by "Arrays.copyOf".
Added more general methods in "MathUtils".
Replaced call to "Arrays" by the equivalent from "MathUtils".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1067247 13f79535-47bb-0310-9956-ffa450edef68

071da06f993503cbdab51c7b0e5ea1d03540eb7f
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0d5a7c12c6ad0b0cac8943e771e5c8b985206e4e
1296837368
Gilles Sadowski
MATH-442
Original code provided by Dietmar Wolz.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1067216 13f79535-47bb-0310-9956-ffa450edef68

0d5a7c12c6ad0b0cac8943e771e5c8b985206e4e
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7efbda86822bd8a390f7c77f432dc7e03ce969ed
1296773106
Gilles Sadowski
Another unit test.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1067018 13f79535-47bb-0310-9956-ffa450edef68

7efbda86822bd8a390f7c77f432dc7e03ce969ed
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676a8c30592b350d03463f761ce31a14fbd86ee1
1296729619
Gilles Sadowski
Javadoc fix.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1066775 13f79535-47bb-0310-9956-ffa450edef68

676a8c30592b350d03463f761ce31a14fbd86ee1
:100644 100644 63c3ea8bbfecbca8089827aa4d312cc7164343bb 8b3cff5917735209c2616c8342768f1526b9fed7 M	src/main/java/org/apache/commons/math/util/Pair.java

51c98c2591eb6bac178a279f44a2caeacccd0b11
1296639895
Sebastian Bazley
Drop unused last parameter

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1066393 13f79535-47bb-0310-9956-ffa450edef68

51c98c2591eb6bac178a279f44a2caeacccd0b11
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ac40942be2753eb6991480b45930110f6b911325
1296611832
Sebastian Bazley
No point catching and then calling fail - just let JUnit do the work

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1066303 13f79535-47bb-0310-9956-ffa450edef68

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d0859066e141d027d43e960d129ecbea469e6cbd
1296611005
Sebastian Bazley
No point catching and then calling fail - just let JUnit do the work

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1066301 13f79535-47bb-0310-9956-ffa450edef68

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c367c492c4aa64df1604dd2559d77a582d02802d
1296610669
Sebastian Bazley
No point catching and then calling fail - just let JUnit do the work

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1066299 13f79535-47bb-0310-9956-ffa450edef68

c367c492c4aa64df1604dd2559d77a582d02802d
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f0a26f7a57df7969ff77d623367abbd8e84d6603
1296609831
Sebastian Bazley
Fix broken tests: add missing fail() calls

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1296604596
Sebastian Bazley
Use actual array sizes rather than magic numbers

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d655c3c4b4ce13b05814ed773851b339641198a0
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1296589981
Sebastian Bazley
Tidy up test

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9219569c4d0d63ec085c0bb2518ecc95fc862f63
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e21cf435aa2457ceebaf775abc431104c27ddc85
1296589925
Sebastian Bazley
Tidy up test

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1066176 13f79535-47bb-0310-9956-ffa450edef68

e21cf435aa2457ceebaf775abc431104c27ddc85
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810dfa3110ae57e16a716be0e75473309a6fc32f
1296589520
Sebastian Bazley
Tidy up test

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1066173 13f79535-47bb-0310-9956-ffa450edef68

810dfa3110ae57e16a716be0e75473309a6fc32f
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060ebedce59a93efb3df4555500cbce6a2757087
1296589326
Sebastian Bazley
Missing @Override

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1066172 13f79535-47bb-0310-9956-ffa450edef68

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1296589294
Sebastian Bazley
Remove unnecessary throws clauses

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7c20e477daaf11f33855fcd107807254f172d60d
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Sebastian Bazley
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MATH-505 TestUtils is thread-hostile

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MATH-505 TestUtils is thread-hostile

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MATH-503
Step function.


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Make private immutable fields final

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Javadoc update.


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MATH-503
Added sigmoid and generalized logistic functions.


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Gilles Sadowski
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Use single report method to make changes to the base time easier

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Output timing info as a ratio with respect to StrictMath benchmark result.


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Check all FastMath methods against StrictMath results

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3c3b871fb1920b540906d6d75d867a040787e3ab
1295875192
Sebastian Bazley
MATH-477 FastMath Javadoc should show which methods actually use java.lang.Math internally
Also fixed round(int) to use local FastMath method

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1062764 13f79535-47bb-0310-9956-ffa450edef68

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4f81905fba280216227df5c7c0bd26c4c77c97f0
1295873998
Gilles Sadowski
Splitted the single "testPerformance" method into several ones (one test case
per mathematical function) for easier comparison. Added a third benchmark
(that calls "Math" methods).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1062761 13f79535-47bb-0310-9956-ffa450edef68

4f81905fba280216227df5c7c0bd26c4c77c97f0
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e260d84f6032cb9fdd124dfcfe1280f82096d699
1295873243
Sebastian Bazley
MATH-493 FastMath min and max fail with (Infinity,-Infinity) and (0,0, -0.0)
Fixing (0,0, -0.0) by using code from Harmony.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1062758 13f79535-47bb-0310-9956-ffa450edef68

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7c42d548679c6b202d15bdabac8eb95058953f8f
1295862519
Gilles Sadowski
MATH-500
Temporarily moved "ConvergingAlgorithm" and "ConvergingAlgorithmImpl" to
package "analysis.integration". See MATH-501.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1062707 13f79535-47bb-0310-9956-ffa450edef68

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1295822270
Luc Maisonobe
added FastMath.hypot
JIRA: MATH-478

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Luc Maisonobe
javadoc

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1295821328
Luc Maisonobe
added FastMath.scalb(double, int) and FastMath.scalb(float, int)
deprecated MathUtils.scalb(double, int)
JIRA: MATH-498

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1062550 13f79535-47bb-0310-9956-ffa450edef68

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1295797472
Sebastian Bazley
Split testPerformance() into new class

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1b539aede8441fa34ae05c39d1ddc1f2b6e821d5
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1295785241
Sebastian Bazley
Update nextAfter Javadoc

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1062406 13f79535-47bb-0310-9956-ffa450edef68

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1295784693
Sebastian Bazley
Add another change

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36f716d4d118e9463b2d19a9c97402103e2f128a
1295780784
Luc Maisonobe
fixed nextAfter implementations for handling of some special values
fixed the signature of the float version, as the spec is to have a double second argument
moved the existing tests that were used in the former implementation in MathUtils,
fixing them also as two of them were not compliant with the spec for equal numbers
Jira: MATH-478

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1295778524
Luc Maisonobe
added getExponent methods to FastMath
JIRA: MATH-497

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1295778274
Luc Maisonobe
announced bugs fixed by sebb

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1062363 13f79535-47bb-0310-9956-ffa450edef68

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Luc Maisonobe
javadoc

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1062359 13f79535-47bb-0310-9956-ffa450edef68

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d3d2350a00d7b132cf9cfc92bd921d0c0c28244f
1295744249
Sebastian Bazley
MATH-496 Create FastMath copySign methods

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1062303 13f79535-47bb-0310-9956-ffa450edef68

d3d2350a00d7b132cf9cfc92bd921d0c0c28244f
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8f1f532e5213443cf80dabc8cb4eee442799b11d
1295743954
Sebastian Bazley
Should only test against public methods.

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1295728117
Sebastian Bazley
Javadoc tweak

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1295727971
Sebastian Bazley
Simplify code by using doubleHighPart

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1062257 13f79535-47bb-0310-9956-ffa450edef68

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1295727817
Sebastian Bazley
Update changes

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1062256 13f79535-47bb-0310-9956-ffa450edef68

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1295727580
Sebastian Bazley
MATH-494 FastMath atan2 does not agree with StrictMath for special cases
Add doubleHighPart() method to better handle splitting high absolute values
Add getSign() utility method

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1062253 13f79535-47bb-0310-9956-ffa450edef68

11b1b60440bfbf6b58d7b4dfa270b4a2aad19c9e
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1295713326
Sebastian Bazley
Tidy up debug output

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21cc8139c4fb4f124cd8a7930371d2c3368128f0
1295660697
Sebastian Bazley
MATH-494 Allow for sufficiently close numbers but still detect +/- 0 difference

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5e873783294c04f2a8eb47518e808445b2b2900c
1295646373
Sebastian Bazley
MATH-493 FastMath min and max fail with (Infinity,-Infinity)
(still to fix zero case)

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1062040 13f79535-47bb-0310-9956-ffa450edef68

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97d623a094d6d0415282016a6ebaf49d6d147c29
1295641477
Sebastian Bazley
Correct list of unique methods

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1062007 13f79535-47bb-0310-9956-ffa450edef68

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26dd73d76505036b82f8f01ae330fe90bbb6868c
1295640297
Sebastian Bazley
MATH-478 FastMath is not an exact replacement for StrictMath
Add missing methods - TODO implement our own versions
Document which methods are additional to StrictMath

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1061996 13f79535-47bb-0310-9956-ffa450edef68

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67d7ea5fe8ff2c423980a1ab883183995e9e506d
1295640070
Sebastian Bazley
Make Special test methods generic
Add tests for two parameters
Add checks for missing or extra methods

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1061991 13f79535-47bb-0310-9956-ffa450edef68

67d7ea5fe8ff2c423980a1ab883183995e9e506d
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cc53d3a3b5dd283205a81f020992c23bb7e3ac23
1295625367
Gilles Sadowski
MATH-492
Forgot to add a reference in the "changes.xml" file.


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cc53d3a3b5dd283205a81f020992c23bb7e3ac23
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cda314a1ca1de138c9512013acc25b7631dbd1ce
1295624301
Gilles Sadowski
MATH-492
Removed class "MaxIterationsExceededException". Replaced last occurrence by
"MaxCountExceedeException".


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154b791d891c42f8524295c7eaf9d05469acc22c
1295622775
Gilles Sadowski
MATH-491
Replaced old (checked) "DimensionMismatchException" by its unchecked
equivalent in package "exception".


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2a4571c869afdd6db569901fb9a1fc0ac2f2b7df
1295618898
Gilles Sadowski
Trailing spaces.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1061812 13f79535-47bb-0310-9956-ffa450edef68

2a4571c869afdd6db569901fb9a1fc0ac2f2b7df
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eb60d3d8b5ac846eeaa4c6588fb820223465db13
1295614263
Gilles Sadowski
MATH-488
Removed occurrences of "MathException" in multidimensional interpolator.
Replaced "DimensionMismatchException" by its unchecked equivalent (MATH-491).
[I forgot to make those changes as part of MATH-458.]
Fixed Javadoc.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1061790 13f79535-47bb-0310-9956-ffa450edef68

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b418a08fd8df1f79c464cd34274790a01425070c
1295584725
Sebastian Bazley
Bugs have been fixed; fail in future

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b418a08fd8df1f79c464cd34274790a01425070c
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Sebastian Bazley
Typo in constant name

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Sebastian Bazley
MATH-476 FastMath code contains 'magic' numbers
Extracted 2^52 value as a constant

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f45eb1fe480cfa8683bbe60b48d273848e851bbb
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Sebastian Bazley
MATH-476 FastMath code contains 'magic' numbers
Extracted "splitter" value as a constant

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Sebastian Bazley
MATH-489 FastMath acos fails when input abs value is less than about 5.7851920321187236E-300 - returns NaN

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Sebastian Bazley
MATH-489 Fix overflows in acos calculation

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1295578473
Sebastian Bazley
Javadoc

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b40044022917e473e6cbc8d6d38b06963ed31fe9
1295577952
Sebastian Bazley
Fix up double nextAfter special cases; add float test

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1295576924
Sebastian Bazley
Only check public methods

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31c6506658bb2fc65a748f0579fe0da17403341e
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278ec094f9877737fde3cbadfe0b309edb8a909e
1295563115
Luc Maisonobe
improved javadoc on infinite values for nextAfter

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278ec094f9877737fde3cbadfe0b309edb8a909e
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1a1471b9ad5ca60a345e5c85a902bab167426538
1295562836
Luc Maisonobe
fixed behavior of nextAfter(double, double) for infinity,
added nextAfter(float, float) and nextUp(float)
JIRA: MATH-478

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1061551 13f79535-47bb-0310-9956-ffa450edef68

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1295559114
Luc Maisonobe
limit visibility of event states list to AbstractIntegrator class only

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d03df85846b3eadc6da781fb4a4611a8a058226c
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5bfbf61114fb751054cc6bfdb74b83089be89882
1295557031
Luc Maisonobe
separate discrete event detection from adaptive step size handling in ODE solvers,
thus improving robustness, maintainability and speed
JIRA: MATH-484


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1061508 13f79535-47bb-0310-9956-ffa450edef68

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1295555574
Luc Maisonobe
added MathInternalError

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Sebastian Bazley
Rearrange DOUBLE_SPECIAL_VALUES in decreasing absolute value to help catch first failure
Add MathUtils.EPSILON and SAFE_MIN as other likely break points

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Sebastian Bazley
Javadoc clarification for signum

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Sebastian Bazley
Update changes with recent fixes

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Sebastian Bazley
MATH-486 FastMath toRadian and toDegree don't handle large double numbers well

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Sebastian Bazley
Ensure correct sign when toRadians() returns zero
[Not needed for toDegrees() as the calculation does not underflow]

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Sebastian Bazley
MATH-483 FastMath does not handle all special cases correctly

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Sebastian Bazley
MATH-478 FastMath is not an exact replacement for StrictMath
Add signum(float)

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2f5435ad010d358bb674fddff238c97f4d1463cd
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Sebastian Bazley
MATH-480 - Fix ulp(Infinity) to return Infinity rather than NaN
MATH-478 - Adds ulp(float)

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Sebastian Bazley
MATH-479 FastMath.signum(-0.0) does not agree with Math.signum(-0.0)
(tests already added as part of math483)

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Sebastian Bazley
MATH-483 Add FastMath special test case code
TODO - enable fail when bugs have been fixed

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Gilles Sadowski
Removed trailing spaces.


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a51705729f88d1cd6a1b675f310fda61c90d135c
1295366550
Gilles Sadowski
Javadoc cleanup.


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Sebastian Bazley
Tab and trailing space removal

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Sebastian Bazley
Clarify Javadoc link references

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cf1726f03603c45fcbd5ea478a93010502ec1fe3
1295296204
Sebastian Bazley
Wrong issue number: MATH-491 should be MATH-471

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294ab9c797a7d57533cb8746d0962f8f575a2365
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Sebastian Bazley
MATH-471 MathUtils.equals(double, double) does not work properly for floats
- update changes file

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61b8b011be3af86bebffcf97a5cf04907f76d295
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Sebastian Bazley
MATH-482 FastMath.max(50.0f, -50.0f) => -50.0f; should be +50.0f

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5dcca48038fb6274cc155251d09db12746ccce71
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Sebastian Bazley
MATH-482 FastMath.max(50.0f, -50.0f) => -50.0f; should be +50.0f

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ffcaeb072fe0789bb9a64f8488ce9df742ba7da9
1295283143
Sebastian Bazley
Unused import

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76495c3c72416296f1c8f0a02e697a936d888036
1295269573
Gilles Sadowski
MATH-475
Updated the Javadoc to make clear that 2 adjacent floating point numbers
are considered equal whatever the allowed tolerance.


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14793a7de1abaaa1ae1abd0092e70f278757ea2d
1294935170
Gilles Sadowski
"Commons Math" instead of "Commons-Math"


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1294931618
Gilles Sadowski
Update.


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fc024205650fd286f407da7fa40cba524a15f7ae
1294887477
Sebastian Bazley
MATH-471 MathUtils.equals(double, double) does not work properly for floats
- add equivalent (float, float) methods and basic tests

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2e7caff6901bb06556b2844be5d7924035358949
1294835738
Gilles Sadowski
MATH-470
"Un-deprecate" unit test.
Javadoc clean up.


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Sebastian Bazley
Javadoc grammar

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1d1e1b8c3b833c1a0012852318003f514489e46c
1294509054
Phil Steitz
Updated changelog to reflect fixes for MATH-384, MATH-385.

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1294448644
Phil Steitz
Commented out long-running test case.

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0308fc3555d1f3b15e914fb8a097bc8f23d2f508
1294441186
Gilles Sadowski
MATH-459
Removed usage of "o.a.c.m.MathRuntimeException".


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1294435159
Gilles Sadowski
Unused "import".


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1294433734
Sebastian Bazley
The private fields can now be made final

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1294432392
Gilles Sadowski
MATH-422
Removed setters. Removed coresponding unit tests.
Added a "getInstance" method so that some tests can still work.
Removed a seemingly unnecessary call to the "clone" method.


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Sebastian Bazley
MATH-466 Fix the same problem in the 3rd class

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1294422434
Sebastian Bazley
MATH-466 - update Javadoc

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9733c588bed1ab39388f76edb344968c742c7f78
1294419657
Gilles Sadowski
MATH-466
Throwing exceptions when preconditions are violated.


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6033d14c1fc1b408e4f20e0a7f2a7b52ce81ca44
1294343010
Luc Maisonobe
Fixed an awkward statement that triggered a false positive warning
JIRA: MATH-467

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d05f26160a434239c8d81be80206838ac63ad1c3
1294330851
Gilles Sadowski
MATH-458
Removed the checked "MathException" from the interpolator interfaces.
Updated all affected classes.
"LoessInterpolator": Replaced usage of "MathException" with specific
exceptions.


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0b954c55d91d02491f6a5ba6cacec1f40ae7a908
1294330645
Gilles Sadowski
MATH-468
Forgot to commit that file!


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107e722aee87803f7bff5a030a0ba249bf240029
1294327823
Gilles Sadowski
MATH-468
Utility methods to check that an argument is not NaN nor infinite.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1055911 13f79535-47bb-0310-9956-ffa450edef68

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1294325563
Sebastian Bazley
Add serialVersionUID

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32b81ba451538476156ae6962d0e41e6293c5775
1294325520
Sebastian Bazley
Suppress NPE warning

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1294325490
Sebastian Bazley
Raw type

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a8f437d89e818eb9c083b6fbc016f13f19a97175
1294325476
Sebastian Bazley
Unused imports

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834ced11579b22d7088900a2245d86d7fabf0e74
1294323092
Sebastian Bazley
Unnecessary casts

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ec2f2d20fe9ebc29593b037196bc59f2e3cf3af7
1294322852
Sebastian Bazley
Unused imports

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e8184c8d19e3c1f0083dad7412c0cd6b706d3167
1294322751
Sebastian Bazley
Javadoc - no such param

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e8184c8d19e3c1f0083dad7412c0cd6b706d3167
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0102842f60b79faf82d4176c537c1a3c5d15c607
1294320077
Gilles Sadowski
Unnecessary "return".


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0102842f60b79faf82d4176c537c1a3c5d15c607
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de2670a5a653cb978b68abfe3787b9a44269aa7c
1294313527
Gilles Sadowski
MATH-461
"RealVectorFormat", "ComplexFormat", "Vector3DFormat" do not inherit anymore 
from the Java standard "Format". Removed methods that were mandated by this base
class (because they were not compatible with the new policy that CM should only
throw unchecked exceptions).
"CompositeFormat" now contains only static methods: Made it a utility class       
(i.e. with a "private" constructor).


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1294079800
Phil Steitz
Fixed javadoc typos.

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Phil Steitz
Added filter for spurious dead store warning.

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Phil Steitz
Modified constructor added in the fix for JIRA: MATH-384 to copy, rather than reference the input array.

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Phil Steitz
Javadoc.  Added missing param tag.

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Phil Steitz
Javadoc. Drop extaneous params..

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Phil Steitz
Added package description.

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Phil Steitz
Fixed checkstyle errors: hidden fields, missing javadoc.

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Phil Steitz
Fixed checkstyle errors: missing javadoc.

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Phil Steitz
Fixed checkstyle errors: extra parens, missing javadoc.

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Phil Steitz
Fixed checkstyle errors: hidden field, missing javadoc.

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Phil Steitz
Fixed checkstyle errors: operator placement, missing javadoc.

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Phil Steitz
Fixed checkstyle errors: hidden fields, missing javadoc.

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Phil Steitz
Fixed checkstyle errors: missing javadoc.

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Phil Steitz
Fixed checkstyle errors: hidden fields, missing javadoc.

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Phil Steitz
Javadoc only.  Added missing @throws tag.

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Phil Steitz
Added missing javadoc comments.

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Phil Steitz
* Added erfc
* Top-coded both erf and erfc to return extreme values when true values
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* Added tests against reference data
JIRA: MATH-465, MATH-364


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Mikkel Meyer Andersen
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Mikkel Meyer Andersen
Added myself in the developers-section in pom.xml

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Mikkel Meyer Andersen
svn properties set for files created in connection with MATH-431

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Mikkel Meyer Andersen
Starting point for fixing MATH-431. Still some validation tests and documentation are missing.

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Mikkel Meyer Andersen
Purified tests introduced in MATH-385 such that NaNs and infinites are handled properly

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Mikkel Meyer Andersen
Fixes MATH-384

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Mikkel Meyer Andersen
Fixes MATH-385

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24fb136276921dd8529d28a35862bc54464166d8
1293127091
Gilles Sadowski
MATH-461
Created unchecked exception "MathParseException".
Removed occurrence of old "MathRuntimeException".
Modified unit tests to not use the base class "parseObject" method because its
signature contains a checked exception).
Upgraded tests to Junit4 (MATH-423).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1052341 13f79535-47bb-0310-9956-ffa450edef68

24fb136276921dd8529d28a35862bc54464166d8
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c8d56954eb73560bcb8d575b247d4ce3e1fc0afa
1292874100
Sebastian Bazley
MATH-455 Allow Clirr minSeverity to be overridden on the command-line

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1051259 13f79535-47bb-0310-9956-ffa450edef68

c8d56954eb73560bcb8d575b247d4ce3e1fc0afa
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f981077c23a416b8e8597af8ba7a4c1e8236a729
1292201037
Phil Steitz
Added a getUniqueCount() method to Frequency to return the number of unique
values included in the frequency table.

Reported and patched by Patrick Meyer
JIRA: MATH-414

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1044981 13f79535-47bb-0310-9956-ffa450edef68

f981077c23a416b8e8597af8ba7a4c1e8236a729
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ff789397fe1715a953dce79ad33acfcb5a673a3c
1292190402
Phil Steitz
Added nontrivial GLS regression test.  JIRA: MATH-408.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1044935 13f79535-47bb-0310-9956-ffa450edef68

ff789397fe1715a953dce79ad33acfcb5a673a3c
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622f5b537a2126a7f6ae1047c7e3753b5f23d56b
1291942250
Gilles Sadowski
MATH-447
Made all new exception classes inherit from "MathRuntimeException".
Changed accordingly all tests that relied on catching the standard
Java exception (e.g. "MathIllegalArgumentEception" is not a subclass
of "IllegalArgumentEception" anymore).
Replaced occurrences of the old "MathRuntimeException" by the
appropriate exception from the "exception" package (MATH-459).



git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1044186 13f79535-47bb-0310-9956-ffa450edef68

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0d196a0de70f7aff1aac764f74792b0b5249e3be
1291895594
Phil Steitz
Fixed javadoc typos.

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1291815466
Sebastian Bazley
Update Clirr to 2.2.3

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9be0992c0d829f45d0473127efdceda3c54a317d
1291734097
Gilles Sadowski
MATH-454
Pass the number of allowed function evaluations as a parameter to the
"optimize" methods.


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aaee3164c95980cfa7d90090e4d4ba137e93eab5
1291733888
Gilles Sadowski
MATH-438
Removed deprecated methods.


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a79c0bb281d208d40376dc53edc936321467a0e3
1291732816
Gilles Sadowski
MATH-425


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7e4a6f8b6af2bd75b6eb70def9a44641e1d25da0
1291636586
Gilles Sadowski
MATH-452
Made all static variables (accuracies) "private".


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1291601444
Sebastian Bazley
Javadoc typos

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1291601281
Sebastian Bazley
Add missing @Deprecated annotation

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1291601230
Sebastian Bazley
Unused

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b660785bf011697ba99e6c3d50cf383c873a91ee
1291596839
Gilles Sadowski
MATH-451
Removed the "solve" methods lacking the "maxEval" parameter.


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1291577875
Sebastian Bazley
Remove unnecessary throws clauses from testxxx methods

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1291577297
Sebastian Bazley
Unnecessary casts

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1291577241
Sebastian Bazley
Unused imports

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588b93a2bb3874d4334a0eb7f3b23d93a5fcbf58
1291577222
Sebastian Bazley
Add missing @Deprecated annotation

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1042423 13f79535-47bb-0310-9956-ffa450edef68

588b93a2bb3874d4334a0eb7f3b23d93a5fcbf58
:100644 100644 f839553507c59f3bac00b15e7fa21793baa09a00 1b80ae659a067e7cea25a3163e3afbdb8d78d4fb M	src/main/java/org/apache/commons/math/MaxIterationsExceededException.java

3c8c9511575b08419483a0e3c57e551ff43358a7
1291577121
Sebastian Bazley
StringBuffer => StringBuilder for local variables

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1042422 13f79535-47bb-0310-9956-ffa450edef68

3c8c9511575b08419483a0e3c57e551ff43358a7
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6cca072b5c9c5e2e2e0c6f208ce874e03993ed1f
1291462272
Gilles Sadowski
MATH-451
In solvers, the maximum number of evaluations is passed as a parameter to the
method "solve". The "setMaxEvaluations" accessor is removed.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1042151 13f79535-47bb-0310-9956-ffa450edef68

6cca072b5c9c5e2e2e0c6f208ce874e03993ed1f
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:100644 100644 12b71e7af8746a76ec18fc521776b03daf1fd2b9 0b0bbb3160e7659006c718de68f3a20ff16d6e8c M	src/test/java/org/apache/commons/math/analysis/solvers/SecantSolverTest.java
:100644 100644 9c3aa87561d469d876d76c6ee38e8a7fd596e7a0 66cfe01a04f3cc410bc61354f38a879d15f3d1c9 M	src/test/java/org/apache/commons/math/optimization/MultiStartDifferentiableMultivariateRealOptimizerTest.java
:100644 100644 b8b84bb6e837d5b3ac035ae8eea574c1e41a8782 aa7c3317a2c6f611a631d571ae155807302ad8a6 M	src/test/java/org/apache/commons/math/optimization/general/NonLinearConjugateGradientOptimizerTest.java

f4ce7b5a8434c9662dd575c4fe1c8afd2fcf5362
1291248918
Gilles Sadowski
MATH-439
Removed deprecated class (superseded by "AbstractUnivariateRealSolver")..


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1041225 13f79535-47bb-0310-9956-ffa450edef68

f4ce7b5a8434c9662dd575c4fe1c8afd2fcf5362
:100644 000000 e812abc2bca6c6d65d7c1ff5d5b1cca8a7479158 0000000000000000000000000000000000000000 D	src/main/java/org/apache/commons/math/analysis/solvers/UnivariateRealSolverImpl.java

5c760dd1120a4703cdd60e2af192da9295a2c228
1291247923
Gilles Sadowski
MATH-425
Remplaced deprecated code.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1041216 13f79535-47bb-0310-9956-ffa450edef68

5c760dd1120a4703cdd60e2af192da9295a2c228
:100644 100644 1c5082857cb1f8d2ae8813537a83f291fe42a519 e0d50ce92a903ea9a56a93fd8d6795fc517825b5 M	src/main/java/org/apache/commons/math/linear/SingularValueDecompositionImpl.java

69f71c5fbc898c6c6a8712cb1b414f33ae111199
1291247767
Gilles Sadowski
Test added.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1041214 13f79535-47bb-0310-9956-ffa450edef68

69f71c5fbc898c6c6a8712cb1b414f33ae111199
:000000 100644 0000000000000000000000000000000000000000 81798213b079312b16c6ac47c306a05e664e93fd A	src/test/java/org/apache/commons/math/exception/MaxCountExceededExceptionTest.java

73f74addad22ac10ccc2d1581993fdf4ca1564b1
1291175000
Phil Steitz
Replaced deprecated MaximumIterationsExceededException by MaxCountExceededException.  JIRA: MATH-438.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1040868 13f79535-47bb-0310-9956-ffa450edef68

73f74addad22ac10ccc2d1581993fdf4ca1564b1
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381176fdafa492b89b9d628f36d1fb61d62dac5b
1291157834
Gilles Sadowski
MATH-447
New "MathRuntimeException" base class.
"MathUserException" shares the same functionality (and thus is made a subclass
of the former).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1040818 13f79535-47bb-0310-9956-ffa450edef68

381176fdafa492b89b9d628f36d1fb61d62dac5b
:000000 100644 0000000000000000000000000000000000000000 4fcc557389e2bb3db1265513520d2700d40c0b00 A	src/main/java/org/apache/commons/math/exception/MathRuntimeException.java
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9054aac4b948117b838d6a5b15be1f50965d805a
1291118122
Phil Steitz
Modified NormalDistributionImpl.cumulativeProbability to return 0 or 1,
respectively for values more than 40 standard deviations from the mean.
For these values, the actual probability is indistinguishable from 0 or 1
as a double.  Top coding improves performance for extreme values and prevents
convergence exceptions.

JIRA: MATH-414

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1040471 13f79535-47bb-0310-9956-ffa450edef68

9054aac4b948117b838d6a5b15be1f50965d805a
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87430634d19f8f3af1e0019f733afb578c80d669
1290994992
Gilles Sadowski
Added "vararg" parameter to allow "specific" meessage patterns to make use
of additional information.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1040003 13f79535-47bb-0310-9956-ffa450edef68

87430634d19f8f3af1e0019f733afb578c80d669
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68611cca590cb0522d6b2687f916443cb70a8855
1290988365
Phil Steitz
Fixed javadoc typo.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1039982 13f79535-47bb-0310-9956-ffa450edef68

68611cca590cb0522d6b2687f916443cb70a8855
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244b310a66322d398e856423c8fb41210938783e
1290797324
Phil Steitz
Removed JDK 1.5-incompatible annotations.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1039507 13f79535-47bb-0310-9956-ffa450edef68

244b310a66322d398e856423c8fb41210938783e
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6c3e60b9830edf4dd6135b73e8512ff9b2232a5f
1290790946
Gilles Sadowski
MATH-430
Removed deprecated classes "ComposableFunction" and "BinaryFunction".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1039465 13f79535-47bb-0310-9956-ffa450edef68

6c3e60b9830edf4dd6135b73e8512ff9b2232a5f
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0264e5833a5379d77d9999f544ea2299a17daf80
1290790231
Gilles Sadowski
MATH-430
Removed uses of deprecated "BinaryFunction" class.



git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1039459 13f79535-47bb-0310-9956-ffa450edef68

0264e5833a5379d77d9999f544ea2299a17daf80
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ecfebf7a797146254d7f88a6be633f8fa956e4dd
1290789312
Gilles Sadowski
MATH-430
Removed uses of deprecated "BinaryFunction" class.



git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1039450 13f79535-47bb-0310-9956-ffa450edef68

ecfebf7a797146254d7f88a6be633f8fa956e4dd
:100644 100644 1efc7562ce1141753ad809aafbe94974e81b9fc6 0b6f0e641a1ff441574f0a845c0b1ef0cc3e6340 M	src/main/java/org/apache/commons/math/linear/AbstractRealVector.java
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370a7835419930860cb1708e4653647c04b6512b
1290785068
Gilles Sadowski
MATH-430
Removed redundant "mapXxx" methods.
Upgraded tests to Junit4 (MATH-423).
Some test used "assertEquals" without a tolerance (strict equality between
floating point numbers); this failed with Junit4.



git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1039411 13f79535-47bb-0310-9956-ffa450edef68

370a7835419930860cb1708e4653647c04b6512b
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93f7fa5d4b49099038f03b227a6335b147f254f4
1290770869
Gilles Sadowski
MATH-430
Deprecated redundant methods in "RealVector" and "AbstractRealVector" (in
package "linear").


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1039315 13f79535-47bb-0310-9956-ffa450edef68

93f7fa5d4b49099038f03b227a6335b147f254f4
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:100644 100644 8049879fcc504a7427a45810927b5475e0facf9c 339854ddd52b8f51684b013f355802631b34e4e8 M	src/site/xdoc/changes.xml

255ebd2305137a648d85d05dcc438e9d4acf329f
1290710987
Phil Steitz
Updated changelog for JIRA: MATH-420 (should have been included in r1038873).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1039139 13f79535-47bb-0310-9956-ffa450edef68

255ebd2305137a648d85d05dcc438e9d4acf329f
:100644 100644 5f0d8dd48242651ae85d4907b47cdf214bd9b844 8049879fcc504a7427a45810927b5475e0facf9c M	src/site/xdoc/changes.xml

816bbc0803756c649def4e54be3f5f6192d7957d
1290702607
Gilles Sadowski
Added reference to issue MATH-439.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1039087 13f79535-47bb-0310-9956-ffa450edef68

816bbc0803756c649def4e54be3f5f6192d7957d
:100644 100644 b591fe2e457e7b7571ff4237fdb32e024397519b 5f0d8dd48242651ae85d4907b47cdf214bd9b844 M	src/site/xdoc/changes.xml

74ff198bd249a56d1349b963bd265f8899743b9b
1290702120
Gilles Sadowski
MATH-439
Refactored the "solvers" package. Implementations refer to number of
evaluation of the objective function (instead of the number of iterations).
New interfaces and base classes.
"NewtonSolver" fits in the design without resorting to a cast.
Created class "MullerSolver2" to contain the code of the method named "solve2"
in class "MullerSolver".
Removed "UnivariateRealSolverFactory" and "UnivariateRealSolverFactoryImpl".
Default solver in "UnivariateRealSolverUtils" is explicitely instantiated.
"AbstractContinuousDistribution": Type of exception thrown changed in
"UnivariateRealSolverUtils".
Factored out duplicate code (in "GaussNewtonOptimizerTest" and
"LevenbergMarquardtOptimizerTest"): class "Circle" is now called
"CircleVectorial". Also factored out the "Circle" class from
"NonLinearConjugateGradientOptimizerTest": class is named "CircleScalar".
Created "SecantSolverTest", moving there all the tests for the class
"SecantSolver" that were located in class "BrentSolverTest".
Created new interface and base class for polynomial functions solvers
("LaguerreSolver") so that the function type is now checked at compile time.
Removed deprecated exceptions (MATH-441).
Javadoc clean-up.
Lowered tolerance values in some unit tests.
Tests upgraded to Junit 4 (MATH-423).



git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1039083 13f79535-47bb-0310-9956-ffa450edef68

74ff198bd249a56d1349b963bd265f8899743b9b
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a1b027b903b4ce36e97d85a1eeeafbc5cd5530b7
1290641713
Phil Steitz
Added toString() override to StatistictalSummaryValues.  JIRA: MATH-420.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1038873 13f79535-47bb-0310-9956-ffa450edef68

a1b027b903b4ce36e97d85a1eeeafbc5cd5530b7
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b9b5413f8fcb9ab9a127c7040ace0074e07bb53c
1290559332
Gilles Sadowski
MATH-425
Removed redundant exception "throws" clauses.
Javadoc cleanup.
Throwing "NoDataException" instead of "ZeroException" when row or column
data is missing.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1038403 13f79535-47bb-0310-9956-ffa450edef68

b9b5413f8fcb9ab9a127c7040ace0074e07bb53c
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495906471420152675a37d2e52b8a43a9f358408
1290461389
Gilles Sadowski
MATH-430
New package "function" contains univariate and bivariate function objects.
"FunctionUtils" contains methods to compose and combine function objects.
Together they replace "ComposableFunction" and "BinaryFunction" which are
now deprecated.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1037896 13f79535-47bb-0310-9956-ffa450edef68

495906471420152675a37d2e52b8a43a9f358408
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dc9c694e3669522ec6dc71523e4530d7208a38c4
1290349224
Gilles Sadowski
Removed unnecessary "try/catch" statements.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1037468 13f79535-47bb-0310-9956-ffa450edef68

dc9c694e3669522ec6dc71523e4530d7208a38c4
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104dbac78b0b40e02a1adb16b69fe94a03acce80
1290306974
Gilles Sadowski
Refined test (follow-up of MATH-441).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1037372 13f79535-47bb-0310-9956-ffa450edef68

104dbac78b0b40e02a1adb16b69fe94a03acce80
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272ead50e879b7e5007c9328f4a0d39cfd61a0b2
1290290575
Luc Maisonobe
removed the ode.jacobians package
Jira: MATH-380

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1037343 13f79535-47bb-0310-9956-ffa450edef68

272ead50e879b7e5007c9328f4a0d39cfd61a0b2
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4b75615490ee84bfad20bc4f283c3ed11ed6d8e8
1290288704
Luc Maisonobe
Added a normalization feature to transform samples so they have zero mean and unit standard deviation
Jira: MATH-426

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1037333 13f79535-47bb-0310-9956-ffa450edef68

4b75615490ee84bfad20bc4f283c3ed11ed6d8e8
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8302dd02498495277ec0db9301edb2158bb0e314
1290286910
Luc Maisonobe
removed FunctionEvaluationException, DerivativeException and MatrixVisitorException
these exception were  deprecated in 2.2 and a smooth transition path was set up to help users, now all user functions should use the new unchecked MathUserException

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1037328 13f79535-47bb-0310-9956-ffa450edef68

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7a6bd26474f86cb0ee25426d439878f09a40a5bb
1289860796
Luc Maisonobe
added back some features from old exception scheme (accessors for patterns and arguments) to the new scheme
this should ease transition for existing user code

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1035476 13f79535-47bb-0310-9956-ffa450edef68

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5a5322744427201e81ccb964da6166ff06bdb2d0
1289849993
Luc Maisonobe
added new constructors to MathUserException to provide more control to user

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1035419 13f79535-47bb-0310-9956-ffa450edef68

5a5322744427201e81ccb964da6166ff06bdb2d0
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278366bbfd95dfba0ea5658eeb17b3a2ae1343cf
1289823767
Gilles Sadowski
MATH-441
Implemented proposed solution (rethrow last exception if no optimum were found).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1035245 13f79535-47bb-0310-9956-ffa450edef68

278366bbfd95dfba0ea5658eeb17b3a2ae1343cf
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1289770328
Luc Maisonobe
reverting change introduced in 1035003:
it was the javadoc that did not correspond to the intended behavior, not the code

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1035072 13f79535-47bb-0310-9956-ffa450edef68

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11b686c1ab48fd917e45732722deb8378bd56c6d
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Luc Maisonobe
allow either specific or generic formats to be null

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1035009 13f79535-47bb-0310-9956-ffa450edef68

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845ace0b5c8ddfd92b21843f39310032c86040d3
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Luc Maisonobe
fixed message building so the behavior matches the existing javadoc:
general arguments are the ones remaining after the specific ones have been handled

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1035003 13f79535-47bb-0310-9956-ffa450edef68

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1289747091
Luc Maisonobe
typo

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1035002 13f79535-47bb-0310-9956-ffa450edef68

6d28ba7249f044ab9892336e32a53cafcdb4b3e1
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7285331645183d45a7110d03b45e74acf46f8be3
1289742073
Gilles Sadowski
MATH-441
Removed occurences of "FunctionEvaluationException".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1034996 13f79535-47bb-0310-9956-ffa450edef68

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d4e1396d17b54bbda28d17750574800828ea9437
1289741596
Gilles Sadowski
MATH-440
Deprecation.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1034995 13f79535-47bb-0310-9956-ffa450edef68

d4e1396d17b54bbda28d17750574800828ea9437
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255364ac1f6434c1a429433931980145adc181ce
1289687254
Gilles Sadowski
MATH-438
Removed deprecated methods.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1034896 13f79535-47bb-0310-9956-ffa450edef68

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fb076ae61ce200c343c9d4fac27e4f88d8dfd7a2
1289681900
Gilles Sadowski
MATH-441
Removed uses of "FunctionEvaluationException" and "MathRuntimeException".


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cfe62b0ee011e2477275e6f615a2b99473ebd9f4
1289680461
Gilles Sadowski
Removed workaround that ceased to be necessary.


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1289605262
Gilles Sadowski
MATH-440
"MathUserException": Using "Localizable" argument in constructor.


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1289596954
Gilles Sadowski
MATH-438
Removed deprecated methods.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1034573 13f79535-47bb-0310-9956-ffa450edef68

233cbc5dd7902ec87f83c80a6f77597a2673cdc0
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1289596228
Gilles Sadowski
MATH-438
Removed deprecated method.


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1289595818
Gilles Sadowski
MATH-438
Removed deprecated class.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1034564 13f79535-47bb-0310-9956-ffa450edef68

389315280d42b15600a014836471714dc311d419
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1289584430
Gilles Sadowski
MATH-425
Removed deprecated "MatrixVisitorException". Modified affected files.


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1289583370
Gilles Sadowski
MATH-440


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1034487 13f79535-47bb-0310-9956-ffa450edef68

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1289579481
Gilles Sadowski
MATH-438
Removed deprecated class.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1034451 13f79535-47bb-0310-9956-ffa450edef68

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da6d0301568dfa7ded10dfdf0462ddebecc57982
1289570273
Gilles Sadowski
MATH-438
Removed deprecated class.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1034401 13f79535-47bb-0310-9956-ffa450edef68

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1289568239
Gilles Sadowski
MATH-438
Removed deprecated class.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1034394 13f79535-47bb-0310-9956-ffa450edef68

c7ccab6edee9ee93112f37cc1da6fd03b8f4ad46
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2f7356c2950c504b1d43da02168af98401112d3c
1289564132
Gilles Sadowski
"Un-deprecated" method: No equivalent (the suggested replacement is for
bracketing an optimum).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1034365 13f79535-47bb-0310-9956-ffa450edef68

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1289521221
Gilles Sadowski
MATH-438
Removed deprecated class.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1034222 13f79535-47bb-0310-9956-ffa450edef68

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3b54252f4ab35119b50d07ff722c4895324d43a1
1289520807
Gilles Sadowski
MATH-438
Removed deprecated class "InvalidMatrixException".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1034220 13f79535-47bb-0310-9956-ffa450edef68

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1289518852
Gilles Sadowski
MATH-438
Removed deprecated class.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1034210 13f79535-47bb-0310-9956-ffa450edef68

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1289518592
Gilles Sadowski
MATH-438
Removed deprecated class. Updated affected files to use the new
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1289517774
Gilles Sadowski
MATH-438
Removed deprecated class.


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1289517550
Gilles Sadowski
MATH-438
Removed deprecated class.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1034197 13f79535-47bb-0310-9956-ffa450edef68

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3dfc590be5f89612be7b6cb9ca2bcbc045838209
1289517181
Gilles Sadowski
MATH-438
Removed deprecated class "MatrixIndexException".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1034193 13f79535-47bb-0310-9956-ffa450edef68

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1e8f480962572c323e16e85c4381d18a53286345
1289515959
Gilles Sadowski
MATH-438
Removed deprecated methods.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1034190 13f79535-47bb-0310-9956-ffa450edef68

1e8f480962572c323e16e85c4381d18a53286345
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d7d514b6debdd76f4d49498edbda6f8c8a6305cd
1289399016
Gilles Sadowski
MATH-425
Removed usage of exceptions defined in the package "linear". Added
replacements in package "exception". Modified tests to catch the
new exception type. Deleted the deprecated package "estimation" (test
failed because of the changes).
Deprecated "MaxIterationsExceededException".
Changes in package "optimization.general" were necessary to comply with
the new exceptions and to be consistent in reporting the actual cause
of failure.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1033486 13f79535-47bb-0310-9956-ffa450edef68

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e6cf8a934a239ef5ac191dccd1c6f72b38fba350
1289217686
Gilles Sadowski
MATH-195
Corrected typos.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1032554 13f79535-47bb-0310-9956-ffa450edef68

e6cf8a934a239ef5ac191dccd1c6f72b38fba350
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c118e62d6b95c5e0643b34e752b043ad002ba419
1289173782
Gilles Sadowski
MATH-195
Added requested Javadoc comment.
Removed unused import.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1032424 13f79535-47bb-0310-9956-ffa450edef68

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6a56e1ebd1be01fab19889cb857cdaac0a5f53ad
1289086843
Gilles Sadowski
MATH-432
Added a test.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1032182 13f79535-47bb-0310-9956-ffa450edef68

6a56e1ebd1be01fab19889cb857cdaac0a5f53ad
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b21d6c1c768be759ee32618f83fdc2f8c7f50f98
1289045303
Sebastian Bazley
Don't make unnecessary assumptions of Object to be compared
Missing @Override

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1032018 13f79535-47bb-0310-9956-ffa450edef68

b21d6c1c768be759ee32618f83fdc2f8c7f50f98
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e56a4f0a46aa062d8ba0350d007a8dbf7446e3e8
1289045198
Sebastian Bazley
Javadoc; annotations

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1032017 13f79535-47bb-0310-9956-ffa450edef68

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74cd1e53b5ba7e9ef148c0e99c2b11e44ab5f5e7
1289043488
Gilles Sadowski
MATH-432
Made "Pair" immutable.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1032010 13f79535-47bb-0310-9956-ffa450edef68

74cd1e53b5ba7e9ef148c0e99c2b11e44ab5f5e7
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21bb4a0c8bfac8b412609bf753a9303d8534f3eb
1288967258
Gilles Sadowski
Replaced "AbstractMap.SimpleEntry" with "Pair" to be Java 5 compliant.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1031581 13f79535-47bb-0310-9956-ffa450edef68

21bb4a0c8bfac8b412609bf753a9303d8534f3eb
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9753686bfef0ec1a8ebe8e72ab7668afb4027252
1288966421
Gilles Sadowski
MATH-432
New class "Pair" as a replacement for the standard class
"AbstractMap.SimpleEntry" (available in Java 1.6).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1031574 13f79535-47bb-0310-9956-ffa450edef68

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757b8d51d925e72c93868bb8971c4d8e66bdce93
1288877130
Gilles Sadowski
Added a constructor.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1030947 13f79535-47bb-0310-9956-ffa450edef68

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ec427d185ac42e1270797ae23af71ff7d771ad4e
1288875453
Gilles Sadowski
MATH-428
Added a constructor.


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ec427d185ac42e1270797ae23af71ff7d771ad4e
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d7f23ef317b82db42614e5db5a712460ccaa131d
1288869679
Gilles Sadowski
MATH-428
Added a constructor.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1030885 13f79535-47bb-0310-9956-ffa450edef68

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1288834893
Sebastian Bazley
Add missing @Deprecated annotations

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1030796 13f79535-47bb-0310-9956-ffa450edef68

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4bdebbfb76c957f960e19b49ef8e5dd1b84ba1df
1288834799
Sebastian Bazley
Unused imports

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1030795 13f79535-47bb-0310-9956-ffa450edef68

4bdebbfb76c957f960e19b49ef8e5dd1b84ba1df
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:100644 100644 73da607b623fda8c8e03584926ebd634c794f4f9 15fb029d387537d064fc958215326cfb457df59c M	src/test/java/org/apache/commons/math/optimization/MultiStartMultivariateRealOptimizerTest.java
:100644 100644 d652ed43d81beca362b6574bf246272ba73817a4 b20d6d71c1281e1a236c4459e9e499df692957ff M	src/test/java/org/apache/commons/math/optimization/direct/SimplexOptimizerNelderMeadTest.java
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51ec76cc5685566569af3f312efee2aaccadddfc
1288791964
Gilles Sadowski
MATH-195
Created an unchecked "FunctionEvaluationException" in package "exception".
Removed "throws" clause from interface "UnivariateRealFunction".
"PolynomialFunctionLagrangeForm": Added early check on the interpolating
array having distinct points; removed redundant test in methods "evaluate"
and "computeCoefficients".
"DividedDifferenceInerpolator": Removed redundant check.
"Mathutils": Added method "sortInPlace". Removed (most) references to the
deprecated "MathRuntimeException" class.
"optimization.direct": Removed deprecated classes.
Javadoc clean up.



git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1030464 13f79535-47bb-0310-9956-ffa450edef68

51ec76cc5685566569af3f312efee2aaccadddfc
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:100644 100644 405e318cc421a25dc1e7102d583cb0d100672208 f0f7b587594d7f0a6b96af26a3b8c77059e558e5 M	src/test/java/org/apache/commons/math/optimization/univariate/BracketFinderTest.java
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8742126f8f6117d90401f8d3ca1f40cd72b489aa
1288185417
Gilles Sadowski
MATH-425
Deleted deprecated classes in package "linear".
Removed redundant methods in "Array2DRowRealMatrix".
Removed usage of "MatrixIndexException" (class is now deprecated).
Javadoc clean up.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1027952 13f79535-47bb-0310-9956-ffa450edef68

8742126f8f6117d90401f8d3ca1f40cd72b489aa
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3c3ccb79d4e909ddbb552a07a7e9acf2c4e75377
1287999753
Gilles Sadowski
MATH-428
Refactoring of "DirectSearchOptimizer" to separate the optimization and
simplex management aspects. Old classes are deprecated.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1027007 13f79535-47bb-0310-9956-ffa450edef68

3c3ccb79d4e909ddbb552a07a7e9acf2c4e75377
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a3200e5d80add4a81f716bf5ba8155ef378de18a
1287862279
Luc Maisonobe
Fixed k-means++ to add several strategies to deal with empty clusters that may appear during iterations
JIRA: MATH-429

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1026667 13f79535-47bb-0310-9956-ffa450edef68

a3200e5d80add4a81f716bf5ba8155ef378de18a
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eb1b2cfefa07149f078a81c8fb30bb826062b7c5
1286722256
Luc Maisonobe
Improved Percentile performance by using a selection algorithm instead of a
complete sort, and by allowing caching data array and pivots when several
different percentiles are desired
JIRA: MATH-417

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1006301 13f79535-47bb-0310-9956-ffa450edef68

eb1b2cfefa07149f078a81c8fb30bb826062b7c5
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36b2203cd9b5f017abde4e4e85f72584ed9284cd
1286383088
Niall Kegan Pemberton
COMMONSSITE-57 Fix announce mod_mbox link
(I used version 1.4-SNAPSHOT of the commons-build-plugin to do this - need to release it and update commons-parent at some point)

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1005115 13f79535-47bb-0310-9956-ffa450edef68

36b2203cd9b5f017abde4e4e85f72584ed9284cd
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e3aebabc8a6138919010b280457ee0d7a1053b35
1286371803
Gilles Sadowski
MATH-425
Replaced "MatrixIndexException" with "OutOfRangeException" or
"DimensionMismatchException".
Removed try/catch blocks misused as preconditions check.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1005028 13f79535-47bb-0310-9956-ffa450edef68

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15671e2074c0e68388096d9c0b3073fdaea74779
1286371312
Gilles Sadowski
Checkstyle errors.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1005023 13f79535-47bb-0310-9956-ffa450edef68

15671e2074c0e68388096d9c0b3073fdaea74779
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284dc105f474333eeaec59ca9c1b2f1322789363
1286139074
Luc Maisonobe
applied Bill's patch adding sinh, cosh and tanh functions to FastMath
JIRA: MATH-375

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284dc105f474333eeaec59ca9c1b2f1322789363
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d7bdf92e42b3246da4e330caefa1d65ff032cdcc
1286130088
Luc Maisonobe
removed unneeded import

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ceaf74b5a016be72c14ef4db2595aea256474f33
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Luc Maisonobe
grammar

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ceaf74b5a016be72c14ef4db2595aea256474f33
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98cfeedd7930e9821ea22124f2ebe74da52b534a
1286123983
Luc Maisonobe
allow zero length vectors
JIRA: MATH-391

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0d52eb2bf1fa6b106b84f2f8cbadd20658ebbcfb
1286046885
Phil Steitz
Corrected javadoc link.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1003869 13f79535-47bb-0310-9956-ffa450edef68

0d52eb2bf1fa6b106b84f2f8cbadd20658ebbcfb
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92fd8402061493b30e71abd174dfda7cfb496f06
1285956646
Gilles Sadowski
MATH-424
Safe handling of internal data.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1003606 13f79535-47bb-0310-9956-ffa450edef68

92fd8402061493b30e71abd174dfda7cfb496f06
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a71e2a4cf09782af2bca9253929cb85bcd9a8708
1285952182
Sebastian Bazley
This test cannot be fixed at present

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a71e2a4cf09782af2bca9253929cb85bcd9a8708
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e75d06a1a8f10e3635d8cd04943b2a1715af7772
1285951495
Sebastian Bazley
Raw types

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1003580 13f79535-47bb-0310-9956-ffa450edef68

e75d06a1a8f10e3635d8cd04943b2a1715af7772
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733e6524ce1b3872ac1d2036f517841df60f9b21
1285951187
Sebastian Bazley
Constants might as well be static

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1003576 13f79535-47bb-0310-9956-ffa450edef68

733e6524ce1b3872ac1d2036f517841df60f9b21
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348ec676daabf20eb816f9c28293f02cf604af8a
1285948794
Sebastian Bazley
Fix test failure

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1003569 13f79535-47bb-0310-9956-ffa450edef68

348ec676daabf20eb816f9c28293f02cf604af8a
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ea364f0d3f1b389a91de5baddba77bce9d09d3c8
1285948119
Sebastian Bazley
Don't catch Exception and fail(); let JUnit handle it

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1003567 13f79535-47bb-0310-9956-ffa450edef68

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16c4d04a47a568fe310324ae4ce15216407e7073
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Sebastian Bazley
Narrow expected exception

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Sebastian Bazley
Split multiple tests

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Sebastian Bazley
Javadoc

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Sebastian Bazley
Oops, should not have added fail here

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Sebastian Bazley
Add missing fail() calls for expected exceptions

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Remove unread variable

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Sebastian Bazley
Need to call fail() if we don't generate an Exception
Remove unread variable

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Sebastian Bazley
Unnecessary cast

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Java 1.5 does not support Arrays.copyOf()

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Gilles Sadowski
MATH-422
Made "MicrosphereInterpolator" immutable.


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Gilles Sadowski
Removed deprecated code in implementations of "IntegerDistribution".
Added "final" keyword.
Added "sample" methods to "IntegerDistribution" and "ContinuousDistribution"
interfaces.
Cleaned up Javadoc.


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Unthrown Exceptions

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Sebastian Bazley
Unused imports

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Sebastian Bazley
Javadoc fixes

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Add missing @Override marker

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97fe18dc78ff234b94b606033feae4aecb37fec9
1285897573
Sebastian Bazley
Unnecessary to cast byte into byte

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983b064f7f31830788ba2b5485302f02ab637767
1285897202
Sebastian Bazley
Unnecessary to cast byte into byte
Add missing @Override marker

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1285897089
Sebastian Bazley
Unnecessary to cast byte into byte

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Sebastian Bazley
Make immutable private fields final

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1003346 13f79535-47bb-0310-9956-ffa450edef68

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71f799cf419b3de39930f40beefc0328b348fe72
1285851302
Gilles Sadowski
ade all distribution classes immutable (as per the conclusion of MATH-349).
Modified two classes in the "stat" package where some code conflicted with
ditribution immutability.
Replaced instances of "IllegalArgumentException" with an appropriate stateful
exception.
Cleaned up Javadoc comments.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1003048 13f79535-47bb-0310-9956-ffa450edef68

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47fc86afb7dd7656da5d5bf0316b6e52268070a5
1285848466
Luc Maisonobe
removed @Override annotations which are not Java 5 compliant

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1003027 13f79535-47bb-0310-9956-ffa450edef68

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ba818febff823a67d3e68f3c500183f838071f23
1285789824
Luc Maisonobe
Prevent ODE integration to be stuck at initial point when it is restarted after
an event has stopped the previous integration
JIRA: MATH-421

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1002829 13f79535-47bb-0310-9956-ffa450edef68

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38844d12e3c59b3c39acc8c00d7e1dbc52d84e25
1285677489
Gilles Sadowski
Removed deprecated code.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1002145 13f79535-47bb-0310-9956-ffa450edef68

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1285658383
Luc Maisonobe
fixed a missing change from Math to FastMath

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Gilles Sadowski
Removed deprecated code.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1001736 13f79535-47bb-0310-9956-ffa450edef68

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b1a443193116341440f41344780d1fca85de9a11
1285589902
Gilles Sadowski
Removed deprecated code.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1001700 13f79535-47bb-0310-9956-ffa450edef68

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970afd6c78e783ab98b652c8e81c8e07c22a5e52
1285588393
Gilles Sadowski
Removed deprecated code.


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7e00cc35a331ab86e33838579a8507c6fb6d0da0
1285538036
Gilles Sadowski
MATH-349
Removed deprecated code.


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f76efe5f4ef36fadc677c94269927076f2f42eb9
1285455994
Gilles Sadowski
MATH-349
Removed deprecated methods.


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30bacfbe14e57ec64d08baae52efa91877e8dd9b
1285426674
Phil Steitz
Fixed javadoc typo.

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30bacfbe14e57ec64d08baae52efa91877e8dd9b
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a16f53810b9c9b8cb461674c8b1ef7c17102372e
1285369954
Gilles Sadowski
Introduced "MatrixDimensionMismatchException" to replace "InvalidMatrixException"
whenever it was used to signal a row or column dimension mismatch.
"MessageFactory": Fixed wrong order of appearance of general and specific messages.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1001107 13f79535-47bb-0310-9956-ffa450edef68

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c3db036bdb0a4bb4c9db9a71c57548d41c0d22cf
1285369461
Gilles Sadowski
Removed unused import.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1001104 13f79535-47bb-0310-9956-ffa450edef68

c3db036bdb0a4bb4c9db9a71c57548d41c0d22cf
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8de3eb542b2be80ba309b2c91ae1dba75bdb5063
1285243916
Gilles Sadowski
MATH-413 (point 13)
Selecting a random start value (instead of interval bounds).


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6a07726a825da09003d153e52ea30005b1a4c013
1285163665
Gilles Sadowski
MATH-413
Moving classes to a more appropriate package.
Removed unused interfaces.


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583d981e3fcce4dc1ab64d33a0cab06fd44385aa
1285162867
Gilles Sadowski
Fixed Javadoc warning.


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583d981e3fcce4dc1ab64d33a0cab06fd44385aa
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580b9555c83eda737306208c37c4ac24eab456a0
1285098643
Luc Maisonobe
improved documentation (javadoc, code comments about optimization and userguide)
JIRA: MATH-419

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da153bf279f297890ec27bfd03e91bce36af2ef4
1285020367
Luc Maisonobe
improved Well pseudo random numbers generators performances by inlining transforms and using indirection arrays to avoid index computation

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1284947823
Phil Steitz
Fixed errors in multiple regression section. JIRA: MATH-407.

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82d2bae36cf63cd61003fc970d96cc0ee50caa56
1284935666
Luc Maisonobe
Added François Panneton and Pierre L'Ecuyer WELL random generators:
WELL512a, WELL1024a, WELL19937a, WELL19937c, WELL44497a and WELL44497b

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@998744 13f79535-47bb-0310-9956-ffa450edef68

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590ce8052a6f09007cdf070bf0ac15c2d9debf3b
1284640774
Dimitri Pourbaix
MATH-416 fixed

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012b2e98493e90800918569bf51123e860578eb2
1284343302
Phil Steitz
Made intercept/noIntercept configurable in multiple regression classes.  JIRA: MATH-409.

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012b2e98493e90800918569bf51123e860578eb2
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:100644 100644 fdade1a751641320cf4bf7b7d4456ecb095e8b30 5c1ba05202f11eb4961ab7a9a8f8d6f65c7305c7 M	src/main/java/org/apache/commons/math/stat/regression/OLSMultipleLinearRegression.java
:100644 100644 454d9989cb8fb501a7b3dda62b621d485100dd76 819d95143ab0aff3a4246aa2626df4add7c98b63 M	src/site/xdoc/changes.xml
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:100644 100644 c829d8e36a4f7711947d5b419d2f549b72e408be daffb6b33ec1b5b80be6f68c9d5e143b6203d356 M	src/test/java/org/apache/commons/math/stat/regression/MultipleLinearRegressionAbstractTest.java
:100644 100644 56c251d41f9cbeab4f8e26db732769f79de64ae9 88739e2c3a1161359cea15a6d89f5f75c27240c7 M	src/test/java/org/apache/commons/math/stat/regression/OLSMultipleLinearRegressionTest.java

40b47ce75505079af56befb0088a26de8c8d141b
1284231971
Luc Maisonobe
use the new Brent solver constructor instead of setting accuracy and max iteration afterwards

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@996195 13f79535-47bb-0310-9956-ffa450edef68

40b47ce75505079af56befb0088a26de8c8d141b
:100644 100644 1e5bbcd4abda9638fba7ef1d1acca604688144cb 1732650842d9e4ba66eb086eca6c746b6a29926f M	src/main/java/org/apache/commons/math/ode/events/EventState.java

5481717de9f248dfcf4c4f4a9dda0487ee1bef1e
1284225594
Luc Maisonobe
Fixed lost cause in MathRuntimeException.createInternalError
JIRA: MATH-415

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@996179 13f79535-47bb-0310-9956-ffa450edef68

5481717de9f248dfcf4c4f4a9dda0487ee1bef1e
:100644 100644 8cf2f04725769ef0f59b69a8bf2e07957775d698 abf058f35157c42e183be7a23983afde92e21459 M	src/main/java/org/apache/commons/math/MathRuntimeException.java
:100644 100644 90fe0c07025c5687765b2633d2e5a37f7b76e13b 454d9989cb8fb501a7b3dda62b621d485100dd76 M	src/site/xdoc/changes.xml

2bc1662e8b098f6de01f893ba7c672306447fd70
1284224250
Luc Maisonobe
added fast cubic root computation
JIRA: MATH-375

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@996172 13f79535-47bb-0310-9956-ffa450edef68

2bc1662e8b098f6de01f893ba7c672306447fd70
:100644 100644 09c7cd0bfaff1b213e931cc9d646b86ef214adfc 9c471e6364966b336546dc9b724491cdb4475a75 M	src/main/java/org/apache/commons/math/util/FastMath.java
:100644 100644 1a07f12d45fe32bc9f18883e180331f0ab512796 46a2ec005daf86eb5574242eabe8933fb5dc7114 M	src/test/java/org/apache/commons/math/util/FastMathTest.java

aa25e82091234c12c667ba4e4d960d8fdda40e8e
1284223368
Luc Maisonobe
added tests for asin and acos
JIRA: MATH-375

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@996167 13f79535-47bb-0310-9956-ffa450edef68

aa25e82091234c12c667ba4e4d960d8fdda40e8e
:100644 100644 877004f8928d74c6d6b7ea3a5829d3a1c5f48624 1a07f12d45fe32bc9f18883e180331f0ab512796 M	src/test/java/org/apache/commons/math/util/FastMathTest.java

33ec6655a3e4026f913523866495d1ccafd9c511
1284154279
Luc Maisonobe
fixed visibility of an internal constructor that should remain private

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@995990 13f79535-47bb-0310-9956-ffa450edef68

33ec6655a3e4026f913523866495d1ccafd9c511
:100644 100644 57b10a72507a2caf1dbfb390e045a6907d73d3a8 25d820a131ba4df7532daf9e9ae63abcf82f5a2f M	src/main/java/org/apache/commons/math/dfp/DfpField.java

e9877e5b89b4393a29ed50f6d5273ccd10d8db1c
1284154199
Luc Maisonobe
Use Jonathan and Peter Borwein quartic formula to compute PI,
it is MUCH faster than the previous one especially for large
numbers of digits and allows quicker loading of the class.
It was tested to compute about 10000 decimal digits, just for the fun

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@995989 13f79535-47bb-0310-9956-ffa450edef68

e9877e5b89b4393a29ed50f6d5273ccd10d8db1c
:100644 100644 980efc58d5c9a543948fdc990157a2c12d5487eb 57b10a72507a2caf1dbfb390e045a6907d73d3a8 M	src/main/java/org/apache/commons/math/dfp/DfpField.java

c2659d3f89c4527e86f1121e0135d92c0ee29e34
1284154086
Luc Maisonobe
prevent DfpField radix digit to be smaller than 4 as it created problem when converting to double
(we need to be able to create a Dfp with value 2^52 which needs 16 decimal digits or 4 radix digits)

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@995988 13f79535-47bb-0310-9956-ffa450edef68

c2659d3f89c4527e86f1121e0135d92c0ee29e34
:100644 100644 158a151c6fdcf4858578fc0d7c52e7c2c9292edb 980efc58d5c9a543948fdc990157a2c12d5487eb M	src/main/java/org/apache/commons/math/dfp/DfpField.java

9707f8dd5e57662832967082a1a49518cb033d1e
1283950298
Gilles Sadowski
Removed strict equality comparison.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@995035 13f79535-47bb-0310-9956-ffa450edef68

9707f8dd5e57662832967082a1a49518cb033d1e
:100644 100644 18a7a34d3c8d67a2b3962deba640f52074c085b6 896faac80b7c26309fa10a0ff94b32514fc0c49b M	src/main/java/org/apache/commons/math/optimization/univariate/BrentOptimizer.java

dbbb7c72e901bccda1f45caf104248c44e4877fc
1283947453
Gilles Sadowski
Removed unused field.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@995001 13f79535-47bb-0310-9956-ffa450edef68

dbbb7c72e901bccda1f45caf104248c44e4877fc
:100644 100644 d760e05fffb6ab30766a43ead8e07a18b0d4e760 7a782cce337834b7310e2395aae14cf30e1242b8 M	src/main/java/org/apache/commons/math/optimization/general/PowellOptimizer.java

d4a0b9eb3d09bb697afe8a4c2b3340a46b97a53b
1283944961
Gilles Sadowski
Fixed "checkstyle" errors.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@994988 13f79535-47bb-0310-9956-ffa450edef68

d4a0b9eb3d09bb697afe8a4c2b3340a46b97a53b
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:100644 100644 6597e52b8afa3c66bd4b875fd265cf6bf987381e d760e05fffb6ab30766a43ead8e07a18b0d4e760 M	src/main/java/org/apache/commons/math/optimization/general/PowellOptimizer.java
:100644 100644 7aeabf4a938c8ee911ea76612175e839ad77b44d 66f18b5ac5a7d9f976bcd6d4b30b02927ac22a9e M	src/main/java/org/apache/commons/math/optimization/univariate/AbstractUnivariateRealOptimizer.java
:100644 100644 19adf826cb2837dc1fb0024c16a1113b13e7068f b6f32a6c112d074592e0c33ce77023bde42ad2f5 M	src/main/java/org/apache/commons/math/optimization/univariate/BaseUnivariateRealOptimizer.java
:100644 100644 7936a28cd5e13c5a4fdb20679471428bfd066e1b 18a7a34d3c8d67a2b3962deba640f52074c085b6 M	src/main/java/org/apache/commons/math/optimization/univariate/BrentOptimizer.java
:100644 100644 383188ead60ceb29bc426876b4d404cc9b4da3f5 68ff0347ac859e86a75424753b519655d02298d7 M	src/main/java/org/apache/commons/math/optimization/univariate/UnivariateRealOptimizer.java
:100644 100644 585f02cc8cfdbdc64bf4b24447c61f74301c2a0d f8f62c01d88af747b341d6fb41dea523df4f3508 M	src/main/java/org/apache/commons/math/stat/descriptive/AbstractUnivariateStatistic.java
:100644 100644 3543575de7e1da3104e9f6e5fadb5c27f1816a10 b1d9059d8e55435670c7789a5df219b40ff301b2 M	src/main/java/org/apache/commons/math/stat/descriptive/summary/Sum.java
:100644 100644 509ea8f247aa5af1cd992ed317f3d897f90f5467 ce177170eb1104ba645e5feb9324fd93df794bfe M	src/main/java/org/apache/commons/math/util/Incrementor.java

b28b68fb727ed7ec71f78753ccfbf9caefd50b76
1283909091
Phil Steitz
* Modified multiple regression newSample methods to ensure that by default in all cases,
  regression models are estimated with intercept terms.  Prior to the fix for this issue, 
  newXSampleData(double[][]), newSampleData(double[], double[][]) and 
  newSampleData(double[], double[][], double[][]) all required columns of "1's"
  to be inserted into the x[][] arrays to create a model with an intercept term;
  while newSampleData(double[], int, int) created a model including an intercept
  term without requiring the unitary column.  All methods have  been changed to
  eliminate the need for users to add unitary columns to specify regression models.
* Improved javadoc
* Improved tests
JIRA: MATH-411

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@993574 13f79535-47bb-0310-9956-ffa450edef68

b28b68fb727ed7ec71f78753ccfbf9caefd50b76
:100644 100644 40ea0f648a68167a8d6afc5f2c7530fd38f02958 04425117cd5613143cb5b2be1f9bf05e69736311 M	src/main/java/org/apache/commons/math/exception/util/LocalizedFormats.java
:100644 100644 8898a1fa144c9e2ea8a321c92b1aa1c23edcbd55 b069f41752425b784cfa10c35beb3da853058863 M	src/main/java/org/apache/commons/math/stat/regression/AbstractMultipleLinearRegression.java
:100644 100644 333f0dfaf2ce72ea8217bec00a3b5d966f92843d fdade1a751641320cf4bf7b7d4456ecb095e8b30 M	src/main/java/org/apache/commons/math/stat/regression/OLSMultipleLinearRegression.java
:100644 100644 687d16f2f7611a0607165781e869615d5ec66f98 37ec1cbbe328c279fc15f3ed34d47172d2cc8324 M	src/main/resources/META-INF/localization/LocalizedFormats_fr.properties
:100644 100644 e7107532362c05f691a4a236ddd11fd98bd37646 90fe0c07025c5687765b2633d2e5a37f7b76e13b M	src/site/xdoc/changes.xml
:100644 100644 9b8c45e582ffce23f8ab03c39f588a287bf2e83d 7d027d44623577c1525585825c89aa1a56cef7e7 M	src/test/java/org/apache/commons/math/stat/regression/GLSMultipleLinearRegressionTest.java
:100644 100644 4ff058b57ba27d781d9d8c3e9df6dc9fdc077254 c829d8e36a4f7711947d5b419d2f549b72e408be M	src/test/java/org/apache/commons/math/stat/regression/MultipleLinearRegressionAbstractTest.java
:100644 100644 3b39bc477607f8c70d13ef900fe15e7abedb8bdc 56c251d41f9cbeab4f8e26db732769f79de64ae9 M	src/test/java/org/apache/commons/math/stat/regression/OLSMultipleLinearRegressionTest.java

d7746eaf072af359f8511f0e6ca248666d5b8ddc
1283826168
William Barker
fix jar version name

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@993196 13f79535-47bb-0310-9956-ffa450edef68

d7746eaf072af359f8511f0e6ca248666d5b8ddc
:100644 100644 b34b362afee677337a232a26bef414fbd2a19398 405a2bd64cf39edc82b2dfed26efa633256ee290 M	build.xml
:100644 100644 abd718ea4645ef082a0cf84bcb9c3e502b2659d9 30462eaeab17b8d05d42a986fdbba619d4b2c810 M	pom.xml

43ed5002e1483019207c5130459ef469c24dab31
1283763988
Gilles Sadowski
MATH-413 (points 1, 2 and 10)
Reverted to the original version of the convergence checker (using only the
previous and current best points).
"LevenberMarquardtOptimizer": Removed setters (control parameters must be
set at construction). Added a contructor.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@992976 13f79535-47bb-0310-9956-ffa450edef68

43ed5002e1483019207c5130459ef469c24dab31
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:100644 100644 6b872e907c48ef0adb6a4497af10da3484ea8687 3e1f5fdf09d122d4735b0781fb7121409b59d757 M	src/main/java/org/apache/commons/math/optimization/SimpleRealPointChecker.java
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26e3a26e0aad9cbd9efcc0a9928f2fd861ee2da9
1283722670
Gilles Sadowski
Fixed typo in Javadoc comment.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@992897 13f79535-47bb-0310-9956-ffa450edef68

26e3a26e0aad9cbd9efcc0a9928f2fd861ee2da9
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8d6fe81ae4813e7a49715955fca1835f6430173f
1283715768
Luc Maisonobe
fixed checkstyle warnings

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@992879 13f79535-47bb-0310-9956-ffa450edef68

8d6fe81ae4813e7a49715955fca1835f6430173f
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794cbbc01b68f4bc6d34c006803c4a8f3ac9ed29
1283715326
Luc Maisonobe
removing unused variables

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@992876 13f79535-47bb-0310-9956-ffa450edef68

794cbbc01b68f4bc6d34c006803c4a8f3ac9ed29
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4201963b54b697b76b30569d94059b972150a687
1283714892
Luc Maisonobe
added tests based on dfp library (now a package in commons-math)

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@992871 13f79535-47bb-0310-9956-ffa450edef68

4201963b54b697b76b30569d94059b972150a687
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90279e83d82389db2ba88898ec985a1827849e6e
1283714825
Luc Maisonobe
fixed errors with infinities
added asin/acos

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@992870 13f79535-47bb-0310-9956-ffa450edef68

90279e83d82389db2ba88898ec985a1827849e6e
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86d92c9994adc66abd9c3e4de93394a59e79357b
1283713784
Luc Maisonobe
fixed wrong hashcode for mantissa array

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@992864 13f79535-47bb-0310-9956-ffa450edef68

86d92c9994adc66abd9c3e4de93394a59e79357b
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d9e166919799da84dad85c844bfb61f85310778b
1283713733
Luc Maisonobe
fixed javadoc

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@992862 13f79535-47bb-0310-9956-ffa450edef68

d9e166919799da84dad85c844bfb61f85310778b
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533273595959006a3aaf2aab87f1f519d31e386c
1283676476
Luc Maisonobe
fixed missing annotations preventing test to run


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@992734 13f79535-47bb-0310-9956-ffa450edef68

533273595959006a3aaf2aab87f1f519d31e386c
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1eb0c0d7421823470de3a901643ae3be2c9e0a8e
1283641161
Luc Maisonobe
added the dfp library
The Dfp class represent the high precision numbers, it implements our existing Field interface and hence each instance is associated with a DfpField that provides the constants at the required precision as well as factory methods. This allowed to remove the compile-time constraint in the library. Users can even use at the same time a field for 20 decimals digits precision and another field for 100 digits precision. Dfp instances with different precision CANNOT be mixed in the same computation (doing so creates a NaN). A few utility methods have been added, like constructors from integral types, isInfinite and isNaN methods, equal has been renames to equals and its signature changed to match the general Object method (a hashcode method has been added too).
JIRA: MATH-412

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@992697 13f79535-47bb-0310-9956-ffa450edef68

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c2e02c98fd01a8395cdc441015860cc4dcb52bc6
1283606310
Luc Maisonobe
updated a findbugs filter after a method signature change

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@992597 13f79535-47bb-0310-9956-ffa450edef68

c2e02c98fd01a8395cdc441015860cc4dcb52bc6
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9c1000e6134ff4ee6f513824add3765a0bd6c835
1283485613
William Barker
tabs -> spaces. No functional change

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@992191 13f79535-47bb-0310-9956-ffa450edef68

9c1000e6134ff4ee6f513824add3765a0bd6c835
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5d217094d0b07906fd0960e4a372971de70523df
1283402951
William Barker
Change the default value for those UnivariateStatistics that have a conventional value on the empty set.
JIRA: MATH-373



git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@991812 13f79535-47bb-0310-9956-ffa450edef68

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d2a5bc02c002acfa220ce8bad23b9e8af137f47d
1283348755
Gilles Sadowski
MATH-370
Removed deprecated methods.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@991535 13f79535-47bb-0310-9956-ffa450edef68

d2a5bc02c002acfa220ce8bad23b9e8af137f47d
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91b44a1ef7563f54e8acdf29906bd872985a2a6e
1283256300
Gilles Sadowski
Added checks for "null".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@991164 13f79535-47bb-0310-9956-ffa450edef68

91b44a1ef7563f54e8acdf29906bd872985a2a6e
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9102bea5d82c6f97bf3cfb1d8525c13e58a9d418
1283173582
Gilles Sadowski
MATH-394, MATH-397, MATH-404
Overhaul of the "optimization" package.
Removed lots of duplicate code.
Removed methods referring to the concept of "iteration".
Removed interface methods to access the number of evaluations of the
gradient and Jacobian.
Removed all references to "OptimizationException" (replaced by
"ConvergenceException").
Javadoc comments updated.



git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@990792 13f79535-47bb-0310-9956-ffa450edef68

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dd7aa207c06c5fe9262952894ea51fdda7d46049
1283161119
Gilles Sadowski
MATH-397
New "Incrementor" utility class to encapsulate the counter of function
evaluations.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@990743 13f79535-47bb-0310-9956-ffa450edef68

dd7aa207c06c5fe9262952894ea51fdda7d46049
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:000000 100644 0000000000000000000000000000000000000000 7d464877d4eca67d41fe8ded13ea024c2959be32 A	src/test/java/org/apache/commons/math/util/IncrementorTest.java

188ddd423dfb2acfb737f14bdde8d97c0846e83c
1283129449
Gilles Sadowski
MATH-361 and MATH-195 (continued).
Added new exceptions.
Corrected some typos in Javadoc.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@990678 13f79535-47bb-0310-9956-ffa450edef68

188ddd423dfb2acfb737f14bdde8d97c0846e83c
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80b1e90b42a34856b61cec628fcea6633d1000cd
1283119449
Luc Maisonobe
added FastMath and used it everywhere in replacement of java.util.Math
the unit tests have not been added yet (waiting for dfp library addition)
JIRA: MATH-375

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@990658 13f79535-47bb-0310-9956-ffa450edef68

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0db46cc7ea92847d8c71564ac3e0020d7c6be144
1282813173
Gilles Sadowski
MATH-410
Wrong variable ("argument" instead of "arguments").


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@989543 13f79535-47bb-0310-9956-ffa450edef68

0db46cc7ea92847d8c71564ac3e0020d7c6be144
:100644 100644 2c8b0629da330d8ff6b958ce6f0dbc0930aa4340 992d8a746ff0d37300569c8c5addab45bbd222ce M	src/main/java/org/apache/commons/math/FunctionEvaluationException.java

2d734bba70a2a3bad45fc86bacb45d9c37011105
1282699400
William Barker
Fix test that was failing on Windows

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@988777 13f79535-47bb-0310-9956-ffa450edef68

2d734bba70a2a3bad45fc86bacb45d9c37011105
:100644 100644 fbad1efee5e5fe2b7029634f65ed9ee0ba786e6f bf6e23d41fbc54d216e8662a3326ca1a95a8ecb7 M	src/test/java/org/apache/commons/math/stat/descriptive/MultivariateSummaryStatisticsTest.java

d13d1dceb4c839719d55a0f6b19736a4a30a71fd
1282532101
Phil Steitz
Added R-squared and adjusted R-squared statistics to
OLSMultipleLinearRegression
JIRA: MATH-386



git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@987983 13f79535-47bb-0310-9956-ffa450edef68

d13d1dceb4c839719d55a0f6b19736a4a30a71fd
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ad93f56c541538f8f721a45f48cd133d9f06a795
1282520738
Gilles Sadowski
Indentation.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@987962 13f79535-47bb-0310-9956-ffa450edef68

ad93f56c541538f8f721a45f48cd133d9f06a795
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7053ca83e77bbf7370e473ba0b30fcb0dfd47a9e
1282483552
Phil Steitz
Eliminated unnecessary residual calculation (should have been rmoved in r987897 fixing JIRA: MATH-392).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@987901 13f79535-47bb-0310-9956-ffa450edef68

7053ca83e77bbf7370e473ba0b30fcb0dfd47a9e
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917b65a75aa265d88de4ddcd0b74775308a0912b
1282482815
Phil Steitz
Corrected Y variance formula and added error variance methods to return
what were previously reported as Y variances.
JIRA: MATH-392
Reported and patched by Mark Devaney


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@987897 13f79535-47bb-0310-9956-ffa450edef68

917b65a75aa265d88de4ddcd0b74775308a0912b
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229bbd70dea027a56016779dbcaae73f70a2ef0b
1282414347
Phil Steitz
Removed trailing spaces.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@987809 13f79535-47bb-0310-9956-ffa450edef68

229bbd70dea027a56016779dbcaae73f70a2ef0b
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f8b575fe7a108e6b46d5f4020be9a13a41230adf
1282414291
Phil Steitz
Removed tabs and trailing spaces.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@987808 13f79535-47bb-0310-9956-ffa450edef68

f8b575fe7a108e6b46d5f4020be9a13a41230adf
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38876a538f7a9b8b37d6b5232cd2481256fa456a
1281948310
Dimitri Pourbaix
Code simplified in AbstractLeastSquaresOptimizer

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@985828 13f79535-47bb-0310-9956-ffa450edef68

38876a538f7a9b8b37d6b5232cd2481256fa456a
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7ec3424a828f5619df7eeb40f7d2f35cda3c015a
1281823147
Dimitri Pourbaix
MATH-406 corrected

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@985589 13f79535-47bb-0310-9956-ffa450edef68

7ec3424a828f5619df7eeb40f7d2f35cda3c015a
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f27f087466f834092e537777c9f91e47c87f024a
1281542114
Dimitri Pourbaix
MathUtils.safeNorm (translation of enorm.f from Minpack) added

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@984453 13f79535-47bb-0310-9956-ffa450edef68

f27f087466f834092e537777c9f91e47c87f024a
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7dadc2ab019f066a7a287376ad4c63193e8a0a9a
1281534039
Dimitri Pourbaix
MATH-405 corrected

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@984404 13f79535-47bb-0310-9956-ffa450edef68

7dadc2ab019f066a7a287376ad4c63193e8a0a9a
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1909dbe0ca1fc678d9baf1388f8efcf4c65b2a54
1281444310
Gilles Sadowski
Minor clean-up (to avoid changing a method arguments in-place).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@983968 13f79535-47bb-0310-9956-ffa450edef68

1909dbe0ca1fc678d9baf1388f8efcf4c65b2a54
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986597f52ce9c6c1ff13fb134b91696de6ec2796
1281437166
Gilles Sadowski
Moved "Localizable", "DummyLocalizable" and "LocalizedFormats" from
package "exception" to package "exception.util". Modified "import"
statements in all affected files.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@983921 13f79535-47bb-0310-9956-ffa450edef68

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baf90f0ecacb9c719a77acdaaca507d8c6b52a0c
1281101341
Gilles Sadowski
MATH-401
Created "NullArgumentException" (subclass of "MathIllegalArgumentException").
Changed all occurrences of "createIllegalArgumentException" (in "MathRuntime")
to throw the new exception whenever a "null" is not allowed. Added a few
checks for null in "BigFraction.java".
Simplified "LocalizedFormats" enum.
Changed "ZeroNotAllowedException" to "ZeroException".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@982950 13f79535-47bb-0310-9956-ffa450edef68

baf90f0ecacb9c719a77acdaaca507d8c6b52a0c
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f6464ec888f296c40734083d0af6b402c7a18567
1281018373
Gilles Sadowski
"PowellOptimizer": Added a constructor for setting of the absolute tolerance,
removed one redundant function evaluation.
Line search relative tolerance explicitly set in the optimizer instance
created in "PowellOptimizerTest".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@982639 13f79535-47bb-0310-9956-ffa450edef68

f6464ec888f296c40734083d0af6b402c7a18567
:100644 100644 9cd32c839d19d25947628504dba1c137290f3774 a6e073a2b312cc580832b286608040227b0a0f57 M	src/main/java/org/apache/commons/math/optimization/general/PowellOptimizer.java
:100644 100644 c5c00c918c021499c6da8f9d5c92e2c0fe6ef853 bd34b98dbfd1dc7199f3ca376c23da94facfe8a1 M	src/test/java/org/apache/commons/math/optimization/general/PowellOptimizerTest.java

b848e5cc58519899c0abde9e68a4640165209f92
1281001908
Gilles Sadowski
Moved exception utilities to package "exception.util". Created
"MathUnsupportedOperationException". Replaced factory method
"createUnsupportedOperationException" occurences by an explicit
construction of a "MathUnsupportedOperationException".
Corrected a bug (in "AbstractRealVector") where a "dimension"
was stored in a "double". Replaced a "createIllegalArgumentException"
by a "DimensionMismatchException".
Removed checks for "null" in "BigFraction".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@982526 13f79535-47bb-0310-9956-ffa450edef68

b848e5cc58519899c0abde9e68a4640165209f92
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a4f9188a55e6935d4d38ae97806af4d59e671588
1280998080
Dimitri Pourbaix
MATH-377 fixed

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@982507 13f79535-47bb-0310-9956-ffa450edef68

a4f9188a55e6935d4d38ae97806af4d59e671588
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d4e5f1ce10a4ca8c13625bd03c00a156238655cc
1280738168
Luc Maisonobe
simplified javadoc wording

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@981416 13f79535-47bb-0310-9956-ffa450edef68

d4e5f1ce10a4ca8c13625bd03c00a156238655cc
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53335bad55937b1447697455d11e42fe3d26874e
1280736639
Luc Maisonobe
Moved the localization framework used for exceptions in the exceptions package.
Its former place (in the utils package) was misleading as utils is rather for
numerical utilities, not low level library management


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@981404 13f79535-47bb-0310-9956-ffa450edef68

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70f29147ed9f8fe3b3d37c742ef126f046325d92
1280705886
Gilles Sadowski
Created enum "OrderDirection" in "MathUtils" (instead of the existing
"Direction" enum enclosed in an "Order" class). Changed affected files.


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Phil Steitz
Fixed javadoc errors.

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Luc Maisonobe
fixed import

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Luc Maisonobe
removed duplicate strings

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Luc Maisonobe
removed duplicate strings

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Luc Maisonobe
improved error messages

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Luc Maisonobe
removed duplicate strings

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fbd4691a8024f72e6c585e924529e1c7176489a6
1280676933
Luc Maisonobe
added a getMessage(final Locale locale) to class MathIllegalArgumentException
similar to the ones from MathException and MathRuntimeException

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@981247 13f79535-47bb-0310-9956-ffa450edef68

fbd4691a8024f72e6c585e924529e1c7176489a6
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2dff5872394b6f9c0e65f919540df9250f7cdeed
1280676440
Luc Maisonobe
Added a localized UnsupportedOperationException

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@981244 13f79535-47bb-0310-9956-ffa450edef68

2dff5872394b6f9c0e65f919540df9250f7cdeed
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e44b04396d94e91d35fd44381f7ac5c4f2ff2ee9
1280675814
Luc Maisonobe
deprecated an old style exception that was forgotten

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@981243 13f79535-47bb-0310-9956-ffa450edef68

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a758b7ebe34f0e7b8bce305411fa7db1d1124211
1280674890
Luc Maisonobe
fixed another bunch of checkstyle warnings

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@981238 13f79535-47bb-0310-9956-ffa450edef68

a758b7ebe34f0e7b8bce305411fa7db1d1124211
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ee555fecaf3a86dc55468b27c28cc28c2983e87b
1280527384
Luc Maisonobe
fixed numerous checkstyle warnings (javadoc, trailing spaces, tabs, parenthesis, declaration order ...)

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@980981 13f79535-47bb-0310-9956-ffa450edef68

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a74f9eb213eefeb43c5eba610c276682cb2e2e64
1280521871
Luc Maisonobe
removed unused import

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@980944 13f79535-47bb-0310-9956-ffa450edef68

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791ce92322150a03dd5ea2c9b435d399a53a7316
1280521686
Luc Maisonobe
added missing SerialVersionId

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@980942 13f79535-47bb-0310-9956-ffa450edef68

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e38ef229b69c9d85867f920bc74d62c5b2dccbc4
1280520978
Luc Maisonobe
Added support for Gaussian curve fitting
JIRA: MATH-400

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@980938 13f79535-47bb-0310-9956-ffa450edef68

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83aa5b038596e35ba8f1482cdfeca258e8a11c0c
1280431426
Luc Maisonobe
fixed javadoc error
JIRA: MATH-399

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@980544 13f79535-47bb-0310-9956-ffa450edef68

83aa5b038596e35ba8f1482cdfeca258e8a11c0c
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3fd6780f1d91200ad904f4dc45b91d5b3c555d4e
1280342848
Luc Maisonobe
removed reference to Java 1.6 Math.nextUp method
JIRA: MATH-398

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@980154 13f79535-47bb-0310-9956-ffa450edef68

3fd6780f1d91200ad904f4dc45b91d5b3c555d4e
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c25bad3d61bc21eaaaba5dc10615d81d5c0c5217
1280323277
Gilles Sadowski
Removed "println" statements.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@980047 13f79535-47bb-0310-9956-ffa450edef68

c25bad3d61bc21eaaaba5dc10615d81d5c0c5217
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87933eb908f0e9a52ead2b889a1ec9f97a64d898
1280321328
Gilles Sadowski
MATH-396


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@980039 13f79535-47bb-0310-9956-ffa450edef68

87933eb908f0e9a52ead2b889a1ec9f97a64d898
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76fcbc838c0f27d9b029c1f283390cb4f47f8895
1280318621
Gilles Sadowski
MATH-395: Another bug uncovered; all things being equal, the code now behaves
like the Puthon implementation.
MATH-397: Modified "BrentOptimizer" following the changes in
"AbstractUnivariateRealOptimizer".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@980032 13f79535-47bb-0310-9956-ffa450edef68

76fcbc838c0f27d9b029c1f283390cb4f47f8895
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7bbad398dd4da51c933414be9a17b07179dee5e4
1280312822
Gilles Sadowski
MATH-397. Modified "AbstractUnivariateRealOptimizer" so that its usage is
more similar to what is done in package "optimization.general".
Deprecated many methods as a consequence of the new layout.
New utility methods in "ConvergingAlgorithmImpl".
Temporary workaround in "BrentOptimizer" (requirement from base class) to
avoid committing two issues at the same time...


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@980013 13f79535-47bb-0310-9956-ffa450edef68

7bbad398dd4da51c933414be9a17b07179dee5e4
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b1713b49f41498d9a310f548d6cf34686ab346df
1280180852
Gilles Sadowski
MATH-396.
Introducing "PowellOptimizer" which uses "BracketFinder".
"PowellOptimizerTest" uses "SumSincFunction" which uses "SincFunction".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@979460 13f79535-47bb-0310-9956-ffa450edef68

b1713b49f41498d9a310f548d6cf34686ab346df
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2b2bdac2fbdb6db19f1edd634a46299f087f94a9
1280180726
Gilles Sadowski
Corrected typos in some Javadoc comments.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@979458 13f79535-47bb-0310-9956-ffa450edef68

2b2bdac2fbdb6db19f1edd634a46299f087f94a9
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16348154e2c6fc77581189b0eff2ee561faccaed
1280168719
Luc Maisonobe
fixed an import generating a compilation error

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@979401 13f79535-47bb-0310-9956-ffa450edef68

16348154e2c6fc77581189b0eff2ee561faccaed
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65c7c9697457b326f149555166f0e2aae192a609
1280146665
Gilles Sadowski
Fixed bugs in "BrentOptimizer".
Renamed "BrentMinimizerTest" to "BrentOptimizerTest".
Modified "MultiStartUnivariateRealOptimizerTest" because it uses
"BrentOptimizer" as the underlying optimizer, and so was affected
by the changes.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@979257 13f79535-47bb-0310-9956-ffa450edef68

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fc505bba569dede0d29a401798fa9f55df9e27f1
1280060983
Gilles Sadowski
MATH-393
Fixed inconsistent definition of "getResult". Modified associated test accordingly.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@979032 13f79535-47bb-0310-9956-ffa450edef68

fc505bba569dede0d29a401798fa9f55df9e27f1
:100644 100644 10bc9e66c4644e51eeed1b63a14878fc7e1f42b0 26fd5e0acd76f2a862f0cecc242f0f289c6b4f6a M	src/main/java/org/apache/commons/math/optimization/MultiStartUnivariateRealOptimizer.java
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28f28f18ae42f154e9c43de8c3b78f85adf9b318
1279924509
Gilles Sadowski
MATH-389
Duplicate code in "MultivariateRealOptimizer" and
"DifferentiableMultivariateRealOptimizer" moved to new interface
"BaseMultivariateRealOptimizer".
New "AbstractScalarOptimizer" superclass allow implementations that do not
use derivatives.
Deprecated "protected" fields.
"NonLinearConjugateGradientOptimizer" changed to make use of the newly
added accessors instead of the "protected" fields.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@967288 13f79535-47bb-0310-9956-ffa450edef68

28f28f18ae42f154e9c43de8c3b78f85adf9b318
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cfff0e3cd35c9ddee335eacfe90a61ca66e0c42a
1279875577
Luc Maisonobe
Added a feature allowing error estimation to be computed only on a subset of
Ordinary Differential Equations, considered as the main set, the remaining equations
being considered only as an extension set that should not influence the ODE integration
algorithm 
JIRA: MATH-388

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@967007 13f79535-47bb-0310-9956-ffa450edef68

cfff0e3cd35c9ddee335eacfe90a61ca66e0c42a
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1d3a7b6b83d04036d574db3a056aef10fc7b7a51
1279551084
Gilles Sadowski
MATH-387: Allow "null" array arguments in "RealPointValuePair" and
"VectorialPointValuePair" constructors.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@965509 13f79535-47bb-0310-9956-ffa450edef68

1d3a7b6b83d04036d574db3a056aef10fc7b7a51
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96eca83048dfa6759382e3f4942e0ebfcf2db635
1278711619
Gilles Sadowski
MATH-361


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40c5b89fa66110e4d29ef8cebb61344c35f6c876
1278681328
Gilles Sadowski
MATH-361


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1278632706
Gilles Sadowski
MATH-361


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1278339010
Gilles Sadowski
MATH-361
MATH-382


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8c131082913e0edc1ae248d36407f88991d7aa53
1277987443
Gilles Sadowski
MATH-361
Added new exceptions. Replaced several instances of "IllegalArgumentException"
with a more specific exception.
For not yet released code, removed the checked "DimensionMismatchException"
from the method signature and replaced its instances with the new (unchecked)
version of the exception.
Corrected typos in Javadoc comments.


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1277726942
Gilles Sadowski
MATH-379


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cb50fe991de0296fc781a10ba0e28e19016e52a8
1277726495
Gilles Sadowski
MATH-361.
Added a check to avoid triggering a "NullPointerException" if the argument
list is "null".
Added unit tests.


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1277470841
Gilles Sadowski
MATH-361


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1277381354
Gilles Sadowski
MATH-361


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Luc Maisonobe
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1277219151
Gilles Sadowski
MATH-378


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Luc Maisonobe
added missing translations

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Luc Maisonobe
replaced forgotten calls to deprecated exception constructors

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7d375de02e70bb63a5a9189d33fd51e76eed6c86
1276798527
Luc Maisonobe
added missing @since and @deprecated

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@955693 13f79535-47bb-0310-9956-ffa450edef68

7d375de02e70bb63a5a9189d33fd51e76eed6c86
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69463d9bd6d9af6461664244348aa6a7389ff28c
1276740681
William Barker
fix the ant build for the new localization

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@955459 13f79535-47bb-0310-9956-ffa450edef68

69463d9bd6d9af6461664244348aa6a7389ff28c
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1eaea0b549f685bd416cef68faa3a137b9bb3519
1276729418
Luc Maisonobe
changed the localization mechanism for error messages. The new system is based on an enum rather than on duplicated string literals.
JIRA: MATH-361

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@955423 13f79535-47bb-0310-9956-ffa450edef68

1eaea0b549f685bd416cef68faa3a137b9bb3519
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526cab34dea7b961f22c55b42b4e44c617078e85
1276696398
Gilles Sadowski
MATH-376


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1276649165
Phil Steitz
Really make poissonConsistencyTest use a fixed seed.  Complete intent of r949613.

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adc837ab18b037b1f28974702aaaea4dcc36595f
1276080086
Gilles Sadowski
Partially fixing MATH-370 (full resolution is delayed to a major release).


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Luc Maisonobe
Added a setQRRankingThreshold method to Levenberg-Marquardt optimizer to improve robustness of rank determination.
JIRA: MATH-352

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1275832746
Luc Maisonobe
added a test derived from an invalid issue

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Phil Steitz
Added @since tags.

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Luc Maisonobe
reverting a change introduced by error in r949935

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1275373536
Luc Maisonobe
fixed an error message

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f7f988679e14addf6d1dc7009fd27e9aa0a5570b
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Phil Steitz
Added sampling methods to the distribution classes, based on the random
data generation methods in the random package.
JIRA: MATH-310

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1275348793
Phil Steitz
Moved 2.2 changes to correct location.

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1275314764
Phil Steitz
Fixed javadoc typos.

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1bc8da88342eb1c26bdacaae1e17cc5cc0698a8a
1275257251
Phil Steitz
Changed Poisson consistency test to use a fixed seed.

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a42fd5fd92c9919608e3929ebdcd80db20886e0c
1275246205
Phil Steitz
Fixed javadoc typo.

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1275244474
Phil Steitz
Eliminated trailing spaces.

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c7286afcd2884f4fd8abc2e8a1f46232491bf3a1
1275244250
Phil Steitz
Added random data generation methods to RandomDataImpl for the remaining
distributions in the distributions package.  Added a generic nextInversionDeviate method that takes a discrete or continuous distribution as argument and generates
a random deviate from the distribution.
JIRA: MATH-310

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@949553 13f79535-47bb-0310-9956-ffa450edef68

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1275239007
Phil Steitz
Added chisquare test assertion.

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Phil Steitz
Fixed javadoc typo.

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ac0ee454c62470f6b74c392293dab5f90de2e7d0
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615ca9a000c253575e6f62bed87db6110b750834
1275156950
Luc Maisonobe
Fixed Levenberg-Marquardt optimizer that did not use the vectorial convergence checker.
Now this optimizer can use either the general vectorial convergence checker or its own specialized convergence settings.
Minor changes had to be introduced in the test data, they have been validated
JIRA: MATH-362


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@949433 13f79535-47bb-0310-9956-ffa450edef68

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1275149466
Luc Maisonobe
removed unnecessary imports

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1274624504
Phil Steitz
Fixed javadoc typo.

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90dc5f6064e2ea5a35f2e81a1b964a1528c0e8b5
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a2711c189d9754c22e3aba2de1c6c125e52626aa
1274053687
Phil Steitz
Fixed loss of significance error in PersonsCorrelation p-value computation
causing p-values smaller than the machine epsilon (~1E-16) to be reported as 0.
JIRA: MATH-371
Reported and patched by Kevin Childs

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7272826424a28e22d96b86a8e320a37b9e006e71
1274053491
Phil Steitz
Fixed javadoc spelling error.

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7272826424a28e22d96b86a8e320a37b9e006e71
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87097c6f28b171ecc3cdf7f3c7ff53fce51c38aa
1274021870
Phil Steitz
Formatting only.

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720ecda6b2b934841416ab246d1869722eb91163
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Phil Steitz
Fixed javadoc error.

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720ecda6b2b934841416ab246d1869722eb91163
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696375ef922347935e2e0b7aba44e3a2923b3e2c
1273453895
William Barker
Fix a problem with the default sparseIterator when an array has exactly one non-zero element
Submitted by: Albert Huang (with some style tweeks)
Issue: MATH-367


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William Barker
document fix for MATH-368

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William Barker
Correct the spelling of the getSparcity [sic] method.
Issue: MATH-368



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Phil Steitz
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Phil Steitz
Fixed error in javadoc.

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Sebastian Bazley
Eol-style fix

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Luc Maisonobe
Fix NullPointerException in BisectionSolver.solve(f, min, max, initial)
JIRA: MATH-369

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Gilles Sadowski
Removed package part in class name links.


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Gilles Sadowski
MATH-366


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Gilles Sadowski
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Gilles Sadowski
Had forgotten to set the svn:keywords property.


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Gilles Sadowski
MATH-365


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Niall Kegan Pemberton
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Jira: MATH-363

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Added files used in creating RCs.

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removed wrong subscript

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3cccd18dea415649d019f9f8be3d0f1d588c352a
1269718175
Phil Steitz
Added download link to nav.

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3cccd18dea415649d019f9f8be3d0f1d588c352a
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1269716379
Phil Steitz
Make Checkstype happy.

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e78c3d10e12ed7a6f2392cb4d30d6bdcab37872e
1269642998
Luc Maisonobe
removed references to compact SVD and truncated SVD

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Bring DOAP up to date

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Sebastian Bazley
Update to 2010

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svn:eol-style native

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Sebastian Bazley
Add missing AL header

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Phil Steitz
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Sebastian Bazley
Update to v2.3 changes plugin

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Sebastian Bazley
JIRA: MATH-360 Fix use of wrong variable in SmoothingBicubicSplineInterpolatorTest.testPreconditions()

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Sebastian Bazley
Oops - remove spurious bracket

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Use properties from pom.xml rather than fixed values

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Sebastian Bazley
Replace deprecated issueLinkTemplate.

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Tab police

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Sebastian Bazley
Suppress unused variable warnings

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Sebastian Bazley
Unnecessary semi-colons

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Sebastian Bazley
Unused import

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Sebastian Bazley
Translate double-space into new-line when generating release notes

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Luc Maisonobe
typo

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Sebastian Bazley
Fix up project name

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Sebastian Bazley
Re-arrange description to make it easier to paste into the generated release notes
(It's also a bit easier to read in the source).

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Phil Steitz
Edited description of MATH-356.

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Phil Steitz
Checkstyle fixes, @since tags.

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Phil Steitz
Dropped trailing spaces.

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Phil Steitz
Updated to reflect recent bug fixes.

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Phil Steitz
Dropped broken report.

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Luc Maisonobe
Fixed an error in events handling in ODE solvers. In some rare cases, events occurring close to a step start were handled without truncating the step, making them appear as is they occurred close to the step end
JIRA: MATH-358

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Sebastian Bazley
Add compatibility notes from changes.xml

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Sebastian Bazley
Bugzilla => JIRA; CVS => SVN

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Gilles Sadowski
Issues 356 and 357.


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Phil Steitz
Added better release description including summary of compatability breaks.

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Phil Steitz
Updated release notes, download page.

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Phil Steitz
Added description for 2.1 release.

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Phil Steitz
Prepare for 2.1 release.

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Phil Steitz
Dropped pmd report (plugin incompatibility problems)

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Phil Steitz
Made inverse cum accuracy configurable for remaining continuous distributions.

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Phil Steitz
Fixed javadoc typo.

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Phil Steitz
Corrected an error in sample code.  The example did not illustrate the technique being described.

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Phil Steitz
Eliminated references to factory methods dropped in math 2.0.

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Phil Steitz
Added @since tags.

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Phil Steitz
* Added density functions to remaining continuous distributions (F, T, Weibull, Cauchy).
* Deprecated HasDensity interface.
* Added density tests.
* Made Brent Solver (inverse cum) absolute accuracy configurable for all continuous distributions.

JIRA: MATH-332
JIRA: MATH-282
Thanks to Mikkel Meyer Andersen

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Phil Steitz
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Raw types documentation

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MATH-335 Fraction.hashCode() inconsistent with Fraction.equals()
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Make some private fields final

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Increased precision and added density validation.

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Issues
  https://issues.apache.org/jira/browse/MATH-348
  https://issues.apache.org/jira/browse/MATH-349



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fcabfb5a821e31e42aa15740ebc7d740e689819f
1268089052
Phil Steitz
Resolved multiple problems leading to inaccuracy and/or failure to compute Normal, ChiSquare and 
Poisson probabilities, Erf and Gamma functions.

JIRA: MATH-282
JIRA: MATH-301

Summary of changes:

* BrentSolver has been changed to expose its configured absolute accuracy. This solver is used by
  the default inverse cum implementation in AbstractContinuousDistribution and the hard-coded setting
  (1E-6) was limiting accuracy in inverse cumulative probability estimates. AbstractContinuousDistribution
  was changed to allow distributions to set this value and NormalDistributionImpl was changed to set it to
  1E-9 by default and allow users to configure it via a constructor argument.

* AbstractContinuousDistribution and AbstractIntegerDistribution inverseCumulativeProbability methods
  have been modified to check for NaN values returned by cumulativeProbability and throw MathExceptions
  when this happens.

* The criteria for choosing between the Lanczos series and continued fraction expansion when computing
  regularized gamma functions has been changed to (x >= a + 1). When using the series approximation
  (regularizedGammaP), divergence to infinity is checked and when this happens, 1 is returned.

* When scaling continued fractions to (try to) avoid divergence to infinity, the larger of a and b is
  used as a scale factor and the attempt to scale is repeated up to 5 times, using successive powers
  of the scale factor.

* The maximum number of iterations used in estimating cumulative probabilities for PoissonDistributionImpl
  has been decreased from Integer.MAX_VALUE to 10000000 and made configurable.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@920558 13f79535-47bb-0310-9956-ffa450edef68

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46af8180a7dca91b3a59d587b35ddcb56d508dc4
1268007110
Niall Kegan Pemberton
Re-generate the download pages using the new commons-build-plugin .12 (via commons-parent version 13)

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@920156 13f79535-47bb-0310-9956-ffa450edef68

46af8180a7dca91b3a59d587b35ddcb56d508dc4
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1492acad24b4b39ceda3a25ee00c66bb7b5c41e5
1268006747
Niall Kegan Pemberton
Upgrade to version 13 of commons-parent

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@920154 13f79535-47bb-0310-9956-ffa450edef68

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dddb89860169cc7b25d628156e9e9b2060f671aa
1268000544
Luc Maisonobe
fixed wrong subscript

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@920132 13f79535-47bb-0310-9956-ffa450edef68

dddb89860169cc7b25d628156e9e9b2060f671aa
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31811262d7bffbc68503029ee243b23d2ee2c059
1268000358
Luc Maisonobe
improved documentation of ODE package, including the new jacobians part

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2c281e086ba98e3c2dde12dda126035c2088fac6
1267959573
Luc Maisonobe
separated ODEWithJacobians from ParameterizedODE:
when jacobians are already available, there is no need to have a setParameter method

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@919963 13f79535-47bb-0310-9956-ffa450edef68

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90f8b1ac97efc2e10f58be02ce8e5a52bef7df4c
1267911222
Luc Maisonobe
suppressed a warning for unused constructor
the constructor is called only by externalization

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@919856 13f79535-47bb-0310-9956-ffa450edef68

90f8b1ac97efc2e10f58be02ce8e5a52bef7df4c
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78ad153bb7fc93721b8c3c348a3ca5c23dccd94a
1267911037
Luc Maisonobe
fixed findbugs errors

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@919855 13f79535-47bb-0310-9956-ffa450edef68

78ad153bb7fc93721b8c3c348a3ca5c23dccd94a
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c09c944f91b2c7a502e2ccdc7c8b921798ca85cb
1267908602
Luc Maisonobe
fixed javadoc errors

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@919848 13f79535-47bb-0310-9956-ffa450edef68

c09c944f91b2c7a502e2ccdc7c8b921798ca85cb
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b25bec37c059442830ee749c6653ff83e8510259
1267907935
Luc Maisonobe
added event handling to ODE integrators with jacobians

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@919844 13f79535-47bb-0310-9956-ffa450edef68

b25bec37c059442830ee749c6653ff83e8510259
:000000 100644 0000000000000000000000000000000000000000 c567e9c70449196174ab97f230d21d15962b84c3 A	src/main/java/org/apache/commons/math/ode/jacobians/EventHandlerWithJacobians.java
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5d16b13bf54b319705e352638205a8c1c204a6cb
1267904357
Luc Maisonobe
added miscellaneous methods to get some feedback on the integration process
(step start, step size, number of evaluations ...)

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@919829 13f79535-47bb-0310-9956-ffa450edef68

5d16b13bf54b319705e352638205a8c1c204a6cb
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1161903b77703b1a6487d2f768703011ef58dcad
1267901667
Luc Maisonobe
Set up a named Wrapper inner class to map state plus jacobians into compound state
for ODE integration with added variational equations

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@919815 13f79535-47bb-0310-9956-ffa450edef68

1161903b77703b1a6487d2f768703011ef58dcad
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87ccced5653a90bbd8f05e918298e4ea24aff875
1267807150
Luc Maisonobe
improved test coverage

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@919481 13f79535-47bb-0310-9956-ffa450edef68

87ccced5653a90bbd8f05e918298e4ea24aff875
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da4756ac563ffb33a8b716f066525d15fa0fd67b
1267807082
Luc Maisonobe
fixed handling of the time-derivatives of jacobians
simplified copy and serialization

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@919480 13f79535-47bb-0310-9956-ffa450edef68

da4756ac563ffb33a8b716f066525d15fa0fd67b
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b283304b93e880d62d15fecfd31b2a37a9407ad5
1267806956
Luc Maisonobe
Fixed a problem with getInterpolatedDerivatives returning zero derivatives when
an ODE step handler is configured to not use interpolation. It now returns a
constant but non-zero value consistent with at least one point inside the step


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@919479 13f79535-47bb-0310-9956-ffa450edef68

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389154b79c80ea7368f0cce9bbba38540a3f4580
1267736186
Luc Maisonobe
typos

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@919178 13f79535-47bb-0310-9956-ffa450edef68

389154b79c80ea7368f0cce9bbba38540a3f4580
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556c577089a0d270bb68e4da55a13cd98ecc15c8
1267735808
Luc Maisonobe
explained test rationale

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@919172 13f79535-47bb-0310-9956-ffa450edef68

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6caf529d28aba9abb58128a30490718ea3ca0d8a
1267735302
Luc Maisonobe
added package.html for ode.jacobians

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@919167 13f79535-47bb-0310-9956-ffa450edef68

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4ff18cd26691720de94d1e57f1af80dbd01c63fc
1267735249
Luc Maisonobe
fixed an index error in dy/dy0 computation

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@919166 13f79535-47bb-0310-9956-ffa450edef68

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31c3cf359367a6851f7da84efba94b7f9f6386d3
1267651696
Luc Maisonobe
Simplified names of ODE with Jacobians integration classes
Added step handling for this feature

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@918702 13f79535-47bb-0310-9956-ffa450edef68

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5147ff5664d0c349da30fcaf86a8c3b370cccd59
1267472314
Luc Maisonobe
Fixed too stringent interval check in Brent solver:
initial guess is now allowed to be at either interval end
JIRA: MATH-347

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@917668 13f79535-47bb-0310-9956-ffa450edef68

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f11ad9cc273c33be047333a0961758f1ae330bc1
1267463267
Luc Maisonobe
Added a way to compute both the final state in an Initial Value Problem (IVP)
for Ordinary Differential Equations (ODE) and its derivatives with respect to
initial state and with respect to some problem parameters. This allows wrapping
ODE solvers into optimization or root finding algorithms, which in turn can be
used to solve Boundary Value Problems (BVP). There are no implementations (yet)
of BVP solvers in the library.


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1267386907
Luc Maisonobe
updated an exclusion filter for findbugs after recent changes in eigen decomposition

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1267386289
Luc Maisonobe
fixed a checkstyle warning concerning extra parentheses

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1267386191
Luc Maisonobe
fixed variables declaration order to match checkstyle rules

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1267385961
Luc Maisonobe
removed tab

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1267385895
Luc Maisonobe
fixed javadoc

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Phil Steitz
Removed trailing spaces.

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1267385736
Phil Steitz
Removed trailing spaces.

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Luc Maisonobe
removed personal webpages URL

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1267385041
Luc Maisonobe
added a test that was used some time ago while looking at MATH-341

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1267024717
Luc Maisonobe
removed a compilation warning about unused variable

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1267011202
Luc Maisonobe
removed unreachable code
JIRA: MATH-343

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aa09ac7ca6e01a2ba41470ca590f07f2ada8af6f
1266959365
Luc Maisonobe
Fixed wrong return values when enpoints are roots in Brent solver with a user provided initial guess
JIRA: MATH-344

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29c3b75e2d5120771ca85ffcbffc9b7cb5d45c58
1266958898
Luc Maisonobe
Fixed a missing bracketing check of initial interval in Brent solver
JIRA: MATH-343

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1687372e34828dff42e1482ed6575bb982b81b00
1266788772
Dimitri Pourbaix
MATH-432 fixed

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af0580fcdbba314b7e38a6c9bbefa664e32fc1b8
1266366319
Phil Steitz
Added test utility inadvertently omitted from r910264. JIRA: MATH-323.

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1266319217
Dimitri Pourbaix
Dummy tests removed after revision 910475

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1266318775
Dimitri Pourbaix
MATH-333 fixed

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01cb4ed42a4bfe80d8e3f047827f68ca498cec15
1266253854
Phil Steitz
Added SemiVariance. JIRA: MATH-323. Reported and patched by Larry Diamond.

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1265827482
Phil Steitz
Eliminated trailing spaces.

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2c339bf760b29f7f629ca24a8b51c5b0d365932f
1265746056
Luc Maisonobe
Added a warning in the getCoefficients method documentation for
PolynomialFunctionLagrangeForm. Computation may be ill-conditioned
so this method should be used with care.
JIRA: MATH-341


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1265231994
Luc Maisonobe
Fixed an error in BigFraction multiplication for large numerators that don't fit in a primitive int.

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Luc Maisonobe
fixed a spurious exception in EigenDecompositionImpl when a 3x3 block had two identical eigenvalues

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01bc6a7b664af64cc7c74abc5a96a8809880a7d8
1264707751
Luc Maisonobe
added min/max getters for real vectors
For compatibility reasons, these methods have been put in the topmost abstract class but not in the interface yet. It could be pushed to the interface when next major version will be released.
JIRA: MATH-334

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d06e7b7c8e646ff489a5dfba47dfcb283a194e9b
1264690915
Luc Maisonobe
Fixed automatic step initialization in embedded Runge-Kutta integrators.
The relative tolerance setting was never used, only the absolute tolerance was used.
JIRA: MATH-338


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1264543033
Luc Maisonobe
removed unused import

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Luc Maisonobe
typos

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Luc Maisonobe
added Eugene Kirpichov's patch to ignore zero weights in Loess interpolation
JIRA: MATH-296

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Phil Steitz
Disabled testNextPoissonConsistency pending resolution of MATH-282.

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Sebastian Bazley
Document why OK to suppress unchecked warning
Move tag as close as possible to site of warning

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Sebastian Bazley
Document why OK to suppress unchecked warning

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Sebastian Bazley
Document why OK to suppress unchecked warning
Move tag as close as possible to site of warning

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Sebastian Bazley
Document why OK to suppress unchecked warning

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Sebastian Bazley
Fix typo in copy() code

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1264446300
Sebastian Bazley
Does not make sense for count variable to be public

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Sebastian Bazley
Make private static fields final

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1264446236
Sebastian Bazley
Document field thread-safety

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Sebastian Bazley
Make private constant final

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1264185678
Sebastian Bazley
Fix may be null warnings

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1264185655
Sebastian Bazley
FIx deprecation warnings

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Sebastian Bazley
Javadoc fixes

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Sebastian Bazley
Fix missing @Override and @Deprecated annotations

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Sebastian Bazley
Remove suite() methods

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:100644 100644 5e3dbb1a958d662182657b89ba74385a3da39a40 1c89abfcce353a9bc33465fd55e3ec288f7be605 M	src/test/java/org/apache/commons/math/stat/regression/SimpleRegressionTest.java
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de335323ecca89e16666bd1be2da92967c3c4009
1264183928
Sebastian Bazley
Unused import

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@902200 13f79535-47bb-0310-9956-ffa450edef68

de335323ecca89e16666bd1be2da92967c3c4009
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9c25f44b1f998e0b4546e2e7a5c0c32318bcd722
1264182324
Sebastian Bazley
Ignore lib/

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@902187 13f79535-47bb-0310-9956-ffa450edef68

9c25f44b1f998e0b4546e2e7a5c0c32318bcd722
ceb27fe6f39656eeeea0ed1b6602780cc1d648d9
1264169217
Sebastian Bazley
Synch. with test cases listed in pom.xml

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@902089 13f79535-47bb-0310-9956-ffa450edef68

ceb27fe6f39656eeeea0ed1b6602780cc1d648d9
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0dfd7e6582268ab8b576f31978d4df01ec862088
1263833640
Luc Maisonobe
fixed link typo

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@900457 13f79535-47bb-0310-9956-ffa450edef68

0dfd7e6582268ab8b576f31978d4df01ec862088
:100644 100644 b1d3cc2ccccafb1b3c6b290999a6f12d8fae68a6 9f885e9e97e5cf7015d6e7c4d7c4006a8f70e34a M	src/main/java/org/apache/commons/math/ode/events/EventHandler.java

aab15d03dfa62169c0c1c7c24639b0ac3f4a8ae6
1263832278
Luc Maisonobe
improved javadoc

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@900451 13f79535-47bb-0310-9956-ffa450edef68

aab15d03dfa62169c0c1c7c24639b0ac3f4a8ae6
:100644 100644 1a3207e8d2d51fafd4ebf38d0ce6ea29dfef8113 b1d3cc2ccccafb1b3c6b290999a6f12d8fae68a6 M	src/main/java/org/apache/commons/math/ode/events/EventHandler.java

523df0c13719150b1397a6094f410274bfaf1475
1263672077
Phil Steitz
Fixed regression in Frequency.getPct(Object) introduced in 2.0. Cumulative
percent was being returned for Object arguments in place of percent.

JIRA: MATH-329
Reported by Will Wu

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@900016 13f79535-47bb-0310-9956-ffa450edef68

523df0c13719150b1397a6094f410274bfaf1475
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:100644 100644 6ed488994bf2c407bbf04abb1b65f4050c0d14cf 44acbcab605b1b4226ecbcc9cdf0b4389add8384 M	src/site/xdoc/changes.xml
:100644 100644 4fcbe2b5c352ce6fb417f6368faee4a5137a6b62 f216edaf86f825ffff09ba1df563bf6c6fcd4caf M	src/test/java/org/apache/commons/math/stat/FrequencyTest.java

39e2ad8af8fdedac51144158061cb31e7863c3a1
1262281936
Luc Maisonobe
Singular Value Decomposition now computes either the compact SVD (using only positive singular values) or truncated SVD (using a user-specified maximal number of singular values).
Fixed Singular Value Decomposition solving of singular systems.
JIRA: MATH-320, MATH-321


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@894908 13f79535-47bb-0310-9956-ffa450edef68

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d607614a8827a1a5fab587b6e692601d5673833e
1262215600
Phil Steitz
Updated to reflect recent commits.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@894738 13f79535-47bb-0310-9956-ffa450edef68

d607614a8827a1a5fab587b6e692601d5673833e
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e62bb3b7a7a3bbf0f2139a5d111c05f2f09d3221
1262215021
Luc Maisonobe
changed SVD to compute either compact SVD (using only positive singular values)
or truncated SVD (using only singular values up to a user-specified max number)
started fix of SVD solver that did not compute a least square solution
the fix is not complete yet as it seems the solution does not really gives the
smallest possible residuals. See for example the commented out parts of
testMath320A in SingularValueSolverTest.
JIRA: MATH-320

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@894735 13f79535-47bb-0310-9956-ffa450edef68

e62bb3b7a7a3bbf0f2139a5d111c05f2f09d3221
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0fd871ca2c7b94bde0237cdf2f688460a05c1895
1262214203
Phil Steitz
Added gcd(long, long), lcm(long, long) methods. JIRA: MATH-239.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@894730 13f79535-47bb-0310-9956-ffa450edef68

0fd871ca2c7b94bde0237cdf2f688460a05c1895
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b1408ff073a223ab2ed3a3ed0b2534125efb23ac
1262204694
Phil Steitz
Added @since tags for new methods. JIRA: MATH-287

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@894705 13f79535-47bb-0310-9956-ffa450edef68

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3962779401061b95c64e3a73c02ce608f36b4ece
1262136460
Phil Steitz
Deprecated addValue(Integer). JIRA: MATH-260.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@894529 13f79535-47bb-0310-9956-ffa450edef68

3962779401061b95c64e3a73c02ce608f36b4ece
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47c5f8a397f83650d1f3b590bdfbaa2b00758e5b
1262135012
Phil Steitz
Changed weighted variance computational formula to use Chan-Golub method (consistent with unweighted version).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@894528 13f79535-47bb-0310-9956-ffa450edef68

47c5f8a397f83650d1f3b590bdfbaa2b00758e5b
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59cfef1afb36913df921966dbf2dd8ad0545425a
1262116957
Phil Steitz
Fixed type from r894472. JIRA: MATH-287

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@894474 13f79535-47bb-0310-9956-ffa450edef68

59cfef1afb36913df921966dbf2dd8ad0545425a
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44492acc710f898ea50257275adf3064f1025fff
1262116669
Phil Steitz
Added WeightedEvaluation interface and added evaluate(values, weights) to weighted statistics implementations. JIRA: MATH-287.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@894472 13f79535-47bb-0310-9956-ffa450edef68

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977c5765d6aa903893f11471bce3cf2d80d15c2b
1262098898
Phil Steitz
Fixed contributor alpha sort.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@894406 13f79535-47bb-0310-9956-ffa450edef68

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d6555de715889237b7be11639d164e7098862003
1262089498
Luc Maisonobe
fixed a wrong implementation of the Linf vector norm
JIRA: MATH-326

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@894367 13f79535-47bb-0310-9956-ffa450edef68

d6555de715889237b7be11639d164e7098862003
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b30bff0126e1a0301a8b86b40a0b532f1d0ae28f
1262014203
Luc Maisonobe
fixed checkstyle warnings

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@894187 13f79535-47bb-0310-9956-ffa450edef68

b30bff0126e1a0301a8b86b40a0b532f1d0ae28f
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0263d1f5e0f736ed86b49fe40358bf5446ad6940
1262013803
Luc Maisonobe
improved test coverage (now somewhere between 99% and 100%)

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@894186 13f79535-47bb-0310-9956-ffa450edef68

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8404231006b9d6670dabf742d99a5df48a9b1c34
1262013660
Luc Maisonobe
fixed a few remaining unnecessary copy
added more constructors

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@894185 13f79535-47bb-0310-9956-ffa450edef68

8404231006b9d6670dabf742d99a5df48a9b1c34
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340af239a361695d8c9c2b7009de45f12c17bead
1261947981
Luc Maisonobe
fixed a forgotten replacement of divide method
JIRA: MATH-307

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@894109 13f79535-47bb-0310-9956-ffa450edef68

340af239a361695d8c9c2b7009de45f12c17bead
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dc3d8e687d1678fc9557bc8ed85104ebaac96c41
1261944188
Luc Maisonobe
adding rounding mode and scale as per 1.2
JIRA: MATH-307

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@894107 13f79535-47bb-0310-9956-ffa450edef68

dc3d8e687d1678fc9557bc8ed85104ebaac96c41
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8ea4ff364c2d5961fb6afc2c18ee40c25b5f06c3
1261939696
Luc Maisonobe
removed support for non-zero default values in OpenMapRealVector
JIRA: MATH-312

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@894093 13f79535-47bb-0310-9956-ffa450edef68

8ea4ff364c2d5961fb6afc2c18ee40c25b5f06c3
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c44b2009e01632c51980c22d05340c769cbf34c9
1261935217
Luc Maisonobe
added tests showing that issues MATH-303 and MATH-304 are both invalid.
Jira: MATH-303, MATH-304

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@894083 13f79535-47bb-0310-9956-ffa450edef68

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a9ececc5b2cea19b433fde33f45ccd05634afbce
1261510210
Luc Maisonobe
Fixed a convergence discrepancy with respect to theory in Gragg-Bulirsch-Stoer integrator.
JIRA: MATH-324


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@893281 13f79535-47bb-0310-9956-ffa450edef68

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663b0539f6b7fd2a68c9af5337acddf4f3a9e478
1260999853
Luc Maisonobe
Fixed a wrong dimension check in SVD solver
thanks to Dimitri for identifying and solving this

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@891436 13f79535-47bb-0310-9956-ffa450edef68

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b704ce8686d77cd8c2b28374a40ee42d806be563
1260759220
William Barker
Add an optimized dotProduct to OpenMapRealVector.
Slightly modified from contribution by Jake Mannix.
JIRA: MATH-317


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@890159 13f79535-47bb-0310-9956-ffa450edef68

b704ce8686d77cd8c2b28374a40ee42d806be563
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dd7c8dfb0a53aae71716d23b411efbfc934fa2d0
1260678454
William Barker
Removing the mapTo* metheds from OpenMapRealVector, and use the base class methods instead

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@890023 13f79535-47bb-0310-9956-ffa450edef68

dd7c8dfb0a53aae71716d23b411efbfc934fa2d0
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136132c0e8a4ac69ad12adf445dd35895784b36f
1260659732
Luc Maisonobe
added composition features for real functions
JIRA: MATH-313

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@890002 13f79535-47bb-0310-9956-ffa450edef68

136132c0e8a4ac69ad12adf445dd35895784b36f
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7f94e8515fa43bae5ff044d11dd7ef340d8fd9f6
1260659461
Luc Maisonobe
fixed checkstyle errors

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@889999 13f79535-47bb-0310-9956-ffa450edef68

7f94e8515fa43bae5ff044d11dd7ef340d8fd9f6
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4ae6314f2ae3a3bbb7c121be60c244e8d36a4424
1260513500
William Barker
Initial fixes to the iterators.

This fixes the default sparseIterator problem where a RealVector only contains zero elements, and add a sparseIterator to the OpenMapRealVector.

Still TODO:
1) add unit tests
2) remove *mapTo and *mapToSelf from OpenMapRealVector
3) fix javadocs
4) remove support for non-zero default values in OpenMapRealVector 


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@889516 13f79535-47bb-0310-9956-ffa450edef68

4ae6314f2ae3a3bbb7c121be60c244e8d36a4424
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26ca02d94e85f6e6b8c9db96c0411b901d6c89fc
1260399371
Luc Maisonobe
Added mapping and iteration methods to vectors.
Provided a default implementation for the numerous simple methods in the RealVectorInterface.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@889008 13f79535-47bb-0310-9956-ffa450edef68

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1260398964
Luc Maisonobe
added UnivariateRealFunction type implementations of the java.lang.Math methods

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@889007 13f79535-47bb-0310-9956-ffa450edef68

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1260398796
Luc Maisonobe
removed trailing whitespace

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Sebastian Bazley
Unnecessary casts

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Sebastian Bazley
Unnecessary ;

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Sebastian Bazley
Tab police

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1260325802
Sebastian Bazley
Unnecessary casts; tab police

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e0da30042a3e9ab15f359aeb4e321d7e508db07c
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b3ed2415fc58b34667d99f077bae6c8e38b7aced
1260140695
Luc Maisonobe
Fixed an error in handling of very close events during ODE integration
JIRA: MATH-322

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@887794 13f79535-47bb-0310-9956-ffa450edef68

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cc7e3e7fe46844f068c622cf439ef4b654d971ec
1259531616
Luc Maisonobe
Prevent NaN to occur for singular matrices
Numerical inaccuracies in the underlying eigendecomposition could induce
very small negative eigenvalues, so the square root produced NaNs. The
eigenvalues really cannot be negative, so it is safe to replace the negative
ones by 0.
There are remaining problems with singular matrices:
 - the singular vectors also contain NaNs
 - the solver does not really work in least square sense and
   complain about singular matrices
JIRA: MATH-320 

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@885279 13f79535-47bb-0310-9956-ffa450edef68

cc7e3e7fe46844f068c622cf439ef4b654d971ec
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bd345d954b85ef8eb3867c5044f933e34df0c124
1259531271
Luc Maisonobe
replaced duplicated strings by a single static string in many classes
this will later allow enabling the MultipleStringLiterals rule in checkstyle
(there are many other duplicated strings, so this cannot be enabled yet, I'll
do another pass on it later on)

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@885278 13f79535-47bb-0310-9956-ffa450edef68

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9ca7fb78ef078e05e164cab0ad742c6ae49374ae
1259529710
Luc Maisonobe
fixed some NaN appearing in eigenvectors when null pivots occurred in dstqds or dqds algorithms
this is a partial fix for MATH-297 but not a complete one as for example computing the
eigendecomposition if identity leads to three times the same vector ...
JIRA: MATH-297

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@885268 13f79535-47bb-0310-9956-ffa450edef68

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788953ec424f23e2e26b3eb09edffc2cd44c3687
1259364436
Luc Maisonobe
removed an unneeded constant

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@885049 13f79535-47bb-0310-9956-ffa450edef68

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1e8de82657aba6bbe9129b94d78832c93e4072a4
1259364252
Luc Maisonobe
added a test with a singular matrix
updated class to Junit4

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@885048 13f79535-47bb-0310-9956-ffa450edef68

1e8de82657aba6bbe9129b94d78832c93e4072a4
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138baec1c778c2ea1dc1a6efe6d5e76a3b072b1d
1259358338
Phil Steitz
Fixed an overflow error in MathUtils.distance that was causing KMeansPlusPlusClusterer to fail with a NullPointerException when
component distances between points exceeded Integer.MAXVALUE.
JIRA: MATH-305
Reported by Erik van Ingen

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@885027 13f79535-47bb-0310-9956-ffa450edef68

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ca1ca9250b99dd49434468aa5530eb00b2f0680d
1259355904
Phil Steitz
Added toString.

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ca1ca9250b99dd49434468aa5530eb00b2f0680d
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5835bcd27f6d3d1ce163d1c33309bdd5b0b86e33
1259355814
Phil Steitz
Fixed test case for number of generations evolved.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@885009 13f79535-47bb-0310-9956-ffa450edef68

5835bcd27f6d3d1ce163d1c33309bdd5b0b86e33
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6e242983eec762a3ecf24824633550e09287e9bb
1258919454
Phil Steitz
Added generationsEvolved property to GeneticAlgorithm to track the number
of generations evolved by the evolve() method before reaching the StoppingCondition.
JIRA: MATH-315
Reported and patched by Mikkel Meyer Andersen

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@883132 13f79535-47bb-0310-9956-ffa450edef68

6e242983eec762a3ecf24824633550e09287e9bb
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65b50402efffe5fca14e619d8dc7506dafae5e25
1258918030
Phil Steitz
Added test includes to cover tests with nonstandard names in genetics package.

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8e3d9756901897c528329ab472f9a014d4d83f34
1257623822
Luc Maisonobe
fixed yet another eigen decomposition bug identified, debugged and fixed by Dimitri!
Many thanks to him.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@833740 13f79535-47bb-0310-9956-ffa450edef68

8e3d9756901897c528329ab472f9a014d4d83f34
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3ced4f2a4e2546f0d7c309bd8f6305edee0dee8f
1257520317
Luc Maisonobe
Fixed an index computation error in eigen decomposition.
Once again, kudos to Dimitri for debugging this.
JIRA: MATH-318

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7d903ca533833e5db8d2fe150f1e31b54ddda700
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Luc Maisonobe
fixed an ArrayIndexOutOfBoundsException
Kudos to Dimitri who debugged this mess of fortran/java array indices translation
JIRA: MATH-308

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Phil Steitz
Fixed parameter test in RandomDataImpl#nextExponential. JIRA: MATH-309.

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Luc Maisonobe
fixed findbugs false positive

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Luc Maisonobe
fixed checkstyle errors

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Luc Maisonobe
changed TWO_PI visibility to public

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Brent Worden
MATH-311.  Changed probability calculations for Binomial, Poisson, and Hypergeometric distributions to use Catherine Loader's saddle point approximations

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Phil Steitz
Removed dead code, improved test coverage.  Dead code pointed out in JIRA: MATH-306. Thanks to Joerg Huber.

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Niall Kegan Pemberton
Update to commons-parent-12

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Phil Steitz
Javadoc only.  Dropped 'now defunct' from JAMA attribution.

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William Barker
documenting change

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William Barker
Fix for possible zero divide on an indefinite matrix

Fix for: MATH-297


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Luc Maisonobe
fixed typo

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Luc Maisonobe
replaced custom linear solve computation by use of the linear package features

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Luc Maisonobe
tighten checkstyle rules: declaring multiple variables in one statement is now forbidden

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Luc Maisonobe
fixed a checkstyle warning

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Luc Maisonobe
removed a Math.min computation that could be avoided
improved javadoc 

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Luc Maisonobe
improved array structure in Romberg integrator
since the integrator uses only two rows at a time, we allocate only two arrays and reuse them

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Luc Maisonobe
tightened checkstyle rules
catching top level exceptions (Exception, Throwable and RuntimeException) is now forbidden

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Luc Maisonobe
fixed checkstyle warnings

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e91dec76a00e05c451496bdcc7029a626ac684d7
1255313046
Phil Steitz
Implemented alternative algorithm for generating poisson deviates when the mean is large. JIRA: MATH-294.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@824214 13f79535-47bb-0310-9956-ffa450edef68

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Phil Steitz
Added (disabled) test case demonstrating MATH-282 impact on poisson distribution for large means.

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Luc Maisonobe
delay message build until really needed
this allows not wasting time dealing with resources, strings and formatting when the exception is discarded and its message not used
thanks to Gilles for the suggestion

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@822850 13f79535-47bb-0310-9956-ffa450edef68

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Luc Maisonobe
fixed javadoc typo

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Luc Maisonobe
fixed missing throw

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Phil Steitz
Dump expected/observed bin counts on poisson consistency test failure.

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Luc Maisonobe
added multidimensional interpolation using the microsphere algorithm.
JIRA: MATH-300

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Phil Steitz
Added goodness of fit test for poisson deviates.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@819492 13f79535-47bb-0310-9956-ffa450edef68

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Luc Maisonobe
fixed checkstyle warning on missing javadoc

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4812d094678a68b01a68d459523fb79a5c2f3da6
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ba97018855851acc627871d5660054a3d1bba8c0
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Luc Maisonobe
fixed wrong results in Loess interpolator
also added a way to set weights for smoothing
JIRA: MATH-296

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@818942 13f79535-47bb-0310-9956-ffa450edef68

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Phil Steitz
Commit change inadvertenly omitted from r817128.  JIRA: MATH-298

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14c336d5881b97740fc8656aca514c8ca49204ea
1253496653
Phil Steitz
Fixed implementation of EmpiricalDistributionImpl#getUpperBounds to match interface
contract.  Added getGeneratorUpperBounds method to EmpiricalDistributionImpl providing previous behavior.

Jira: Math-298

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@817128 13f79535-47bb-0310-9956-ffa450edef68

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Luc Maisonobe
cleaned up tests wrt Junit 4

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be4cd671b1bfe2df0df6a8f7484e041c90123677
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Luc Maisonobe
Fixed a OutOfBoundException in simplex solver when some constraints are tight
JIRA: MATH-293

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@813301 13f79535-47bb-0310-9956-ffa450edef68

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Luc Maisonobe
renamed a test after a change in the tested class

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1252498934
Luc Maisonobe
applied Andrea's patch to improve test
JIRA: MATH-286

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@812921 13f79535-47bb-0310-9956-ffa450edef68

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1252491075
Sebastian Bazley
MATH-292 TestUtils.assertRelativelyEquals() generates misleading error on failure

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1252486083
Luc Maisonobe
applied Benjamin's patch from 2009-09-08
warning: I had to update the expected matrix in SimplexTableauTest.testdiscardArtificialVariables

JIRA: MATH-286

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@812831 13f79535-47bb-0310-9956-ffa450edef68

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Luc Maisonobe
added Benjamin's patch from 2009-09-07
JIRA: MATH-286

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@812390 13f79535-47bb-0310-9956-ffa450edef68

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Sebastian Bazley
Clarify test failure messages

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Sebastian Bazley
Clarify parse test messages

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Luc Maisonobe
removed unnecessary parentheses

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:100644 100644 979c7f77a5e77d620336f4f430e90e7b19051358 9518216633df281cdb3ac855bfb63c9b4bc4c42c M	src/main/java/org/apache/commons/math/util/MathUtils.java
:100644 100644 90087bede59d6a7426ab911a2e657ffe5824914d 9ae790db036f36624b660437d15deb23b3ee87a1 M	src/main/java/org/apache/commons/math/util/ResizableDoubleArray.java

292e891aab4d737a83ebf786c02bf4003ae0442d
1252251170
Luc Maisonobe
use standard declaration order rules

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@811827 13f79535-47bb-0310-9956-ffa450edef68

292e891aab4d737a83ebf786c02bf4003ae0442d
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e837f7cf8601e0cd68bd946a650f4937e4d44ff6
1252229768
Luc Maisonobe
tighten rules for public/private/abstract/final/... modifiers

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@811786 13f79535-47bb-0310-9956-ffa450edef68

e837f7cf8601e0cd68bd946a650f4937e4d44ff6
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added checkstyle rule to forbid @authors
authors should be listed in the pom file

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6d7818c21e9c784f650bbd912dd6cd9d50ada7a6
1252057494
Luc Maisonobe
fixed misleading number formats in error messages for adaptive stepsize integrators
JIRA: MATH-291

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@811328 13f79535-47bb-0310-9956-ffa450edef68

6d7818c21e9c784f650bbd912dd6cd9d50ada7a6
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e200df3ca7ae2b6ec88c561f07e03876dc9c53fe
1251839675
Luc Maisonobe
replaced a catch for Exception by a catch for NumberFormatException

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@810243 13f79535-47bb-0310-9956-ffa450edef68

e200df3ca7ae2b6ec88c561f07e03876dc9c53fe
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62d4e335d011ce9a1ce5f3ac4fc3a75d7e4ff540
1251839078
Luc Maisonobe
removed unused imports

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@810239 13f79535-47bb-0310-9956-ffa450edef68

62d4e335d011ce9a1ce5f3ac4fc3a75d7e4ff540
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d6beaeaa9c53aa4e6ae128a856e68a9eeb1cadb8
1251838979
Luc Maisonobe
tighten checkstyle rules for hidden fields

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@810238 13f79535-47bb-0310-9956-ffa450edef68

d6beaeaa9c53aa4e6ae128a856e68a9eeb1cadb8
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4dea9e48953a39645038a5aaa296b3124cf610d5
1251835522
Luc Maisonobe
handle an impossible case consistently with other parts of the library

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@810206 13f79535-47bb-0310-9956-ffa450edef68

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a0943be0de0b41c646328b38a9a728c39f21002b
1251834466
Luc Maisonobe
tighten rules for constants naming conventions

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@810196 13f79535-47bb-0310-9956-ffa450edef68

a0943be0de0b41c646328b38a9a728c39f21002b
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1251832370
Luc Maisonobe
tighten checkstyle rules for switch statements

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@810179 13f79535-47bb-0310-9956-ffa450edef68

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89dfffaf228076eeca444bfd87baccd9a35c2999
1251831799
Luc Maisonobe
Added a check for utility class constructor which must be private to prevent instantiation

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@810173 13f79535-47bb-0310-9956-ffa450edef68

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Luc Maisonobe
tighten checkstyle rules for import statements

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@809744 13f79535-47bb-0310-9956-ffa450edef68

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Luc Maisonobe
added missing javadoc parameter

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3dc75f4f69b53b0dedf96c73d1442acfbe894890
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1251683769
Phil Steitz
Added first batch of weighted statistics
  * mean
  * sum
  * product
  * variance
JIRA: MATH-287
Thanks to Matthew Rowles

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Luc Maisonobe
translated new messages and added variable part in format

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Phil Steitz
Added normalizeArray method to MathUtils.

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Phil Steitz
Refer to simplex solver in issues related to this component.

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Luc Maisonobe
removed unused import

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Luc Maisonobe
added tests for both the <= and the >= versions of the constraints
one leads to 0 as a solution, the other one leads to no feasible solution
JIRA: MATH-290

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Luc Maisonobe
removed an unused argument in a private method
JIRA: MATH-289

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Luc Maisonobe
fixed weird spacing as per last patch from Ben

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327124cf4ca07f9e733ccc06f7432b50e149ea9c
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Luc Maisonobe
fixed an error with negative constraints and unfeasible solution
JIRA: MATH-290

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Luc Maisonobe
fixed an error induced by zero entries in simplex solver
JIRA: MATH-288

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f36be8e8b7371fb8814456b6c095866aa802de78
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Luc Maisonobe
fixed an error leading the simplex solver to compute the right solution but return another one
JIRA: MATH-286

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Sebastian Bazley
Typo

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Phil Steitz
Removed reference to maven 1 build.

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Phil Steitz
restored development reports.

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Phil Steitz
Fixed broken link, dropped reference to deprecated package.

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317793eeff84dc9b260301adbe4aa8f5c79f703a
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Luc Maisonobe
Prevent infinite loops in multi-directional direct optimization method when the start point is exactly at the optimal point
JIRA: MATH-283

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Phil Steitz
Updated to reflect 2.0 release.

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Phil Steitz
Prepare for 2.0 RC4

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Sebastian Bazley
Unnecessary ;

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d6a438e931412713e99624cf9ed74470f1040184
1249137025
Luc Maisonobe
moved main java directory for compliance with maven standard directory layout

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@799870 13f79535-47bb-0310-9956-ffa450edef68

d6a438e931412713e99624cf9ed74470f1040184
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Luc Maisonobe
moved assembly directory for compliance with maven standard directory layout

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Luc Maisonobe
cleaned more subversion properties

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Luc Maisonobe
added a protection against infinite loops that occur with some JVM (Sun before 1.4, JRockit, ...)

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Luc Maisonobe
fixed properties

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Luc Maisonobe
added forgotten Apache header

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Phil Steitz
Reverted trunk version back during release vote.

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Phil Steitz
Prepare (again) for 2.0 release.

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Phil Steitz
Added description for 2.0 release.

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Phil Steitz
Change trunk version back during release vote.

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Phil Steitz
Prepare for 2.0 release

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Phil Steitz
Fixed typo and one missed s/used/translated

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Phil Steitz
Put copyright notices in NOTICE.txt, clean up LICENSE.txt (mostly s/used/translated)

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Luc Maisonobe
added references to the classes that are derived works of existing products
in the NOTICE and LICENSE files

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Luc Maisonobe
improved introduction of derived works original licenses as per Phil's suggestion

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Luc Maisonobe
fixed copyright year

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Phil Steitz
Updated menu to include 2.0 javadoc.

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Phil Steitz
Disabled development reports for release.

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Luc Maisonobe
moves subcomponents licenses and disclaimers from NOTICE to LICENSE file,
as required by Apache release policy
http://www.apache.org/dev/release.html#distributing-code-under-several-licenses

thanks to sebb for identifying the issue and providing a pointer to the right way to handle this

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Phil Steitz
fixed typo

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Phil Steitz
Minor edits.

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Phil Steitz
Updated download page for 2.0 release.

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Phil Steitz
Dropped maven 1 release notes jsl.

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Phil Steitz
Prepare for 2.0-RC1.

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Phil Steitz
Dropped unenlightening reference.

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Phil Steitz
Fixed javadoc link.

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Phil Steitz
Dropped reference to non-existent method.

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Luc Maisonobe
removed a print

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Luc Maisonobe
removed a print

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Luc Maisonobe
improved test coverage

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Luc Maisonobe
improved test coverage

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Luc Maisonobe
improved test coverage

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Luc Maisonobe
improved test coverage

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Luc Maisonobe
removed unused function

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Luc Maisonobe
added tests for recent changes
improved coverage

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Luc Maisonobe
make sure at least one run in the multistart univariate optimizer uses the complete search domain

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Luc Maisonobe
fixed an error in multistart univariate optimizer:
the optima found were sorted according to the independant variable x,
not according to the function value y

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Luc Maisonobe
limited accuracy of numbers in string comparisons

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Luc Maisonobe
improved test coverage

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Luc Maisonobe
the new base class does not call setSeed,
defensive programming against too early calls to setSeed are not useful anymore

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Luc Maisonobe
removed a javadoc paragraph that is not true anymore

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Luc Maisonobe
improved test coverage

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Luc Maisonobe
fixed javadoc

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Luc Maisonobe
added an implementation of the Mersenne twister pseudo random number generator
the implementation comes from Mantissa and was a translation of the 2002 version
in C by the algorithm authors, which was published under a BSD license

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Luc Maisonobe
added a base class for bits streams based modern pseudo random generators

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Luc Maisonobe
added new seeding methods for random generators
this will allow implementing some modern and efficient generators
that require a lots of bits for seeding in the form of complete integer arrays

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Luc Maisonobe
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Luc Maisonobe
fixed an index error triggering ArrayIndexOutOfBoundException for an add after a clear
if size has grown

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Luc Maisonobe
added tests for the synchronized version of multivariate summary statistics

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Luc Maisonobe
delegate creation of tested class to a factory so that the derived class
SynchronizedDescriptiveStatisticsTest can override it and ... really test
SynchronizedDescriptiveStatistics

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improved test coverage

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Luc Maisonobe
checked serialization of TransformerMap and added a test for it

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Luc Maisonobe
checked serialization of EuclideanIntegerPoint and added a tests suite for the class

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Luc Maisonobe
optimizers should not be serializable

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Luc Maisonobe
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Luc Maisonobe
removed automatically generated TODO comment

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Luc Maisonobe
convergence checkers should not be serializable

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Luc Maisonobe
checked serialization of BigReal and added a tests suite for the class

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Luc Maisonobe
handle serialization of BigRealField (which is a singleton) properly and test it

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Luc Maisonobe
handle serialization of ComplexField (which is a singleton) properly and test it

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Luc Maisonobe
handle serialization of FractionField (which is a singleton) properly and test it

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Luc Maisonobe
handle serialization of BigFractionField (which is a singleton) properly and test it

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Luc Maisonobe
removed TODO item: the solvers tests are quite different, an abstract test class seems overkill here

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Luc Maisonobe
added test for Fraction serialization

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Luc Maisonobe
added test for BigFraction serialization

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Luc Maisonobe
added new tests for multistart optimizers

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Luc Maisonobe
changing multistart behaviour to rely on search domain boundary rather than on start point
the only implementation of the raw minimizer ignores the start point so the multistart optimizer always found the same point before the change

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Luc Maisonobe
updated plugins to latest version
(except cobertura for now because version 2.3 triggers a strange error in MathUtils)

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Luc Maisonobe
moved velocity template to a default directory where the maven-changes-plugin look for it

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Luc Maisonobe
fixed an error identified by findbugs

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Luc Maisonobe
fixed an exclusion rule after an API change some time ago

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Luc Maisonobe
removed obsolete files

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Luc Maisonobe
added Apache header to some files that didn't have it

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Luc Maisonobe
fixed typo

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Luc Maisonobe
first attempt at release notes for 2.0

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Luc Maisonobe
fixed a change entry after several layer of changes have occurred
to avoid confusing users

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Phil Steitz
Added release notes velocity template.

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Luc Maisonobe
Changed the default max growth factor for multistep methods using Nordsieck representation.
The previous value (10.0) was far too big and lead to numerical instability at high orders
because the last component of the Nordsieck vector, which has a low accuracy, could be
multiplied by 10^k which was ... huge.

These integrators are at least usable now!

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@795407 13f79535-47bb-0310-9956-ffa450edef68

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Luc Maisonobe
Changed the return type of the various interpolation algorithms to the
specific implementation of UnivariateRealFunction each one uses
(thanks to Gilles for reporting the problem and providing the patch)


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Phil Steitz
Added AggregateSummaryStatistics.

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Phil Steitz
Fixed types.

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Phil Steitz
Cleanup / complete AggregateSummaryStatistics implementation
 * Fully synchronized access to aggregating SummaryStatistics instance
 * Exposed all SummaryStatistics stats
 * Improved test coverage
 * Improved javadoc
JIRA: MATH-224

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Phil Steitz
Made long conversion conistent. Improved test coverage. JIRA: MATH-224.

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Luc Maisonobe
added a test case and documentation for the new contract about roots bracketing in univariate real solvers (roots exactly at endpoints are now accepted)
JIRA: MATH-280

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Luc Maisonobe
fixed a bracketing issue due to inconsistent checks
JIRA: MATH-280

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Luc Maisonobe
added an exclusion rule for a false positive from findbugs concerning a desired and documented feature

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8de8a3b6fa5f4d7ea817f915d957ef309441762d
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Luc Maisonobe
removed compilation/findbugs warnings about type safety
the changes include API changes (replacing Object by Comparable<?>).
The class itself is still not generic as this would prevent mixing types which is a desired feature here that is checked in the unit tests
JIRA: MATH-261

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Luc Maisonobe
fixed missing @return tag

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Luc Maisonobe
removed tabs

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Luc Maisonobe
removed tabs

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a5de7d5a689569db3233ef4de8fc8443650b7c8c
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Phil Steitz
Added static direct aggregation method to AggregateSummaryStatistics.  JIRA: MATH-224.

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Phil Steitz
Exposed second moment.

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Phil Steitz
Fixed alpha sort of developers.

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Luc Maisonobe
compute state variation avoiding cancellation in a critical subtraction to preserve accuracy

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Luc Maisonobe
javadoc

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81d127cdfb34bccebe12b817c79832dc489156b7
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Luc Maisonobe
Added a check for too few data in linear regression
JIRA: MATH-279

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Luc Maisonobe
added scalar multiply to the Complex class
JIRA: MATH-277

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Luc Maisonobe
fixed package documentation that still referenced mantissa

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Luc Maisonobe
fixed javadoc

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Luc Maisonobe
optimized matrix update loop

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Luc Maisonobe
fixed another set of warnings identified by recent findbugs versions

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Luc Maisonobe
removed import

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Luc Maisonobe
fixed another set of warnings identified by recent findbugs versions

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removed tabs

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fixed a number of warnings identified by findbugs eclipse plugin version 1.3.9

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Phil Steitz
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Phil Steitz
Added GA.

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Phil Steitz
Fixed broken javadoc links.

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Phil Steitz
Fixed incorrect javadoc link.

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Luc Maisonobe
fixed a serialization error introduced by yesterday changes
(sorry for the noise)

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Luc Maisonobe
fixed typo

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Luc Maisonobe
simplified and reorganized slightly the Adams integrators class hierarchy
this will allow a future BDF integrator development for stiff problems

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Luc Maisonobe
changed Nordsieck transformer to an Adams-specific Nordsieck transformer
the transformer associated with BDF integrator will be quite different

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Luc Maisonobe
improve both numerical accuracy and speed by using optimized loops
in reversed row order (i.e. from higher orders to lower orders) directly
on matrix data.

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Luc Maisonobe
be more precise on return type, we really return a Array2DRowRealMatrix,
so tell it in case some callers can use this information for optimization
(which is the case for Nordsieck transformers, they will be able to use
customized loops on matrix data for the sake of numerical accuracy)

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Luc Maisonobe
moved test problems one package up, to prepare their reuse for stiff integrators

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Luc Maisonobe
added Dimitri to contributors

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Luc Maisonobe
Added a getCovariance method to singular value decomposition

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Luc Maisonobe
added a missing @Override

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1245724550
William Barker
Add test cases for Serialization of subclasses of Complex

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Luc Maisonobe
fixed TWO_FIFTH value in both Fraction and BigFraction

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Luc Maisonobe
fixed a forgotten adjustment of integrator setting
the first integer parameter semantics have changed and the test
was not updated to reflect this, thus leading to test failure

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@787215 13f79535-47bb-0310-9956-ffa450edef68

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1245630369
William Barker
Yes, sebb is correct.  After running tests, readResolve needs to be visible to subclasses to be used.  Since Complex is clearly designed to be subclassed, changing the visiblity.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@787118 13f79535-47bb-0310-9956-ffa450edef68

e9b7a1fe39cd1ba0bc3537186c5074623f5d4bbc
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Phil Steitz
Made protected fields private.  JIRA: MATH-207.

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1245604047
Luc Maisonobe
fixed Adams-Bashforth order for error control (it is k, not k+1)

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Luc Maisonobe
removed the current point from count in multistep integrators
updated documentation since now Adams-Bashforth and Adams-Moulton
are adaptive stepsize integrators

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@787050 13f79535-47bb-0310-9956-ffa450edef68

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Phil Steitz
Added Spearman's correlation.

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314c516318fae1abcecdcac6acdd65e026eda5ef
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William Barker
Restore Serializable to PolynomialFunction

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8cc888a8f66dc7132b97745339b64a9f840bf057
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Phil Steitz
Added ranking subsection.

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1e42e6b3f535d945eae79689e90f6e9d656b0837
1245541067
William Barker
Remove Serializable from some tranient analitics classes.

Let me know if I've nuked ur favorite one, and I can put it back


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786927 13f79535-47bb-0310-9956-ffa450edef68

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9d3a3ad3e670e8b90e17d68506ec9faf77f1743c
1245536256
Sebastian Bazley
Fix thread-safety issues
- code failed to use synch. read
- code could potentially use two different random Generators if another thread changed it

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786918 13f79535-47bb-0310-9956-ffa450edef68

9d3a3ad3e670e8b90e17d68506ec9faf77f1743c
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081dc3307d21519b4f81411c1e5774ad215c88e5
1245533732
Phil Steitz
Made aggregation threadsafe.

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Luc Maisonobe
removed old maven 1 stuff

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Luc Maisonobe
adding missing Apache header

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786890 13f79535-47bb-0310-9956-ffa450edef68

336af060a29beebb600be28ad5a1b092e4a026cd
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363228bf3f5c300bcddc2feeb98175212ca860dc
1245524815
Luc Maisonobe
documented Adams-Bashforth and Adams-Moulton ODE integrators

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786885 13f79535-47bb-0310-9956-ffa450edef68

363228bf3f5c300bcddc2feeb98175212ca860dc
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9c2f4a988cabb6136c755dedcbd3091d729dda83
1245524250
Luc Maisonobe
fixed a warning about a mission serializeVersionUID.
However, should this really be serializable at all ?

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786883 13f79535-47bb-0310-9956-ffa450edef68

9c2f4a988cabb6136c755dedcbd3091d729dda83
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37fb4b50920133ce8f60b239713af64df48554fd
1245523988
Luc Maisonobe
removed lots of serialization in ODE
the only classes/interfaces for which serialization is really important in this package are the step interpolators. The reason for that is that the ContinuousOutputModel is explicitly serializable and contains step interpolators. This allows users to perform integration of any complex model and to save the result of the integration for all integration range by serializing a ContinuousOutputModel instance. This feature is a major one.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786881 13f79535-47bb-0310-9956-ffa450edef68

37fb4b50920133ce8f60b239713af64df48554fd
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2109b5b38444ecd6dbdad6cff1da2a4de59714e3
1245521852
Luc Maisonobe
removed serialization for multistart optimizers

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786878 13f79535-47bb-0310-9956-ffa450edef68

2109b5b38444ecd6dbdad6cff1da2a4de59714e3
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a04a035c49bf2bcb34c41a5a7a16195084e4b852
1245521754
Luc Maisonobe
changed the Adams-Bashforth and Adams-Moulton multistep integrators to adaptive stepsize.
this was made possible thanks to the Nordsieck representation of integration state

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786877 13f79535-47bb-0310-9956-ffa450edef68

a04a035c49bf2bcb34c41a5a7a16195084e4b852
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ca2b746e226170f2c25c8ce944a08cbbffa61142
1245521604
Luc Maisonobe
completely changed integration start phase: now the starter integrator for
multistep methods do not advance time anymore, it is interrupted at first step
end and the interpolator is used to reconstruct Nordsieck vector information at
integration start. Then the normal multistep integrators does start also exactly
at integration start and is responsible for all time advancing stuff, including
step handlers and events handlers management.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786875 13f79535-47bb-0310-9956-ffa450edef68

ca2b746e226170f2c25c8ce944a08cbbffa61142
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ce8aff1a7c90e91c207fe0d99732958d3f765365
1245521356
Luc Maisonobe
simplified arrays allocation and copying

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786874 13f79535-47bb-0310-9956-ffa450edef68

ce8aff1a7c90e91c207fe0d99732958d3f765365
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361239ca3bcd578bfc3d176657516428ce6e3027
1245505409
Luc Maisonobe
error messages for Loess interpolation

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786821 13f79535-47bb-0310-9956-ffa450edef68

361239ca3bcd578bfc3d176657516428ce6e3027
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b80bab2dc0ffe93b3fe705b4f695cc3982a66735
1245505376
Luc Maisonobe
added Loess interpolator, applying Eugene Kirpichov's patch
JIRA: MATH-278

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786819 13f79535-47bb-0310-9956-ffa450edef68

b80bab2dc0ffe93b3fe705b4f695cc3982a66735
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f6b2283957c59ba7d50cc41f90c822b8b9fe90f1
1245504708
Luc Maisonobe
fixed checkstyle errors

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786817 13f79535-47bb-0310-9956-ffa450edef68

f6b2283957c59ba7d50cc41f90c822b8b9fe90f1
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cf9d715a5877d7e622f867ac090fa7dc34f3f835
1245466818
William Barker
Change Complex to use readResolve instead of introspection

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786751 13f79535-47bb-0310-9956-ffa450edef68

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b0a49dae2ea76425f731dbaf9469868fda1aa9e7
1245415081
Luc Maisonobe
added back findbugs exclusion rules for a deprecated class that is still there under its old name

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786482 13f79535-47bb-0310-9956-ffa450edef68

b0a49dae2ea76425f731dbaf9469868fda1aa9e7
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8fd1834813ca42fa107b783fd57672f4f5bc9091
1245414976
Luc Maisonobe
merged curve fitting from mantissa into commons-math

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786479 13f79535-47bb-0310-9956-ffa450edef68

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2f65d00640bf4ba57dd24f390c489b131480cc2f
1245414816
Luc Maisonobe
added internal error generation for defensive programming

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786478 13f79535-47bb-0310-9956-ffa450edef68

2f65d00640bf4ba57dd24f390c489b131480cc2f
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cb6ba883140a043fdbbb4599cf72c116802a42b7
1245413041
Luc Maisonobe
added new tests

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786467 13f79535-47bb-0310-9956-ffa450edef68

cb6ba883140a043fdbbb4599cf72c116802a42b7
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c92a3d9eee0701aae4e62d6678815c0eb03f5a11
1245412994
Luc Maisonobe
added protection against infinite loops by setting a maximal number of evaluations
(some classes were forgotten in the first pass to fix this problem)

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786466 13f79535-47bb-0310-9956-ffa450edef68

c92a3d9eee0701aae4e62d6678815c0eb03f5a11
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5c1e4e54c9ddb6942febde798e0e06f73af71544
1245381988
William Barker
Change the Complex isNaN and isInfinite fields to be transient

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786359 13f79535-47bb-0310-9956-ffa450edef68

5c1e4e54c9ddb6942febde798e0e06f73af71544
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d6d2b673595e33fa906ab9e90dcf36d480f3895d
1245236440
Phil Steitz
Optimized isNaN, isInfinite.  Jira: MATH-2276.  Contributed by Mark Anderson.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@785552 13f79535-47bb-0310-9956-ffa450edef68

d6d2b673595e33fa906ab9e90dcf36d480f3895d
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7695a8c9162520d0d8770bbab6d6088c9a4cd657
1245211355
William Barker
More Serialization changes, mostly for ode and friends.

Unfortunately, had to leave some abstract base classes as Serializable, since they had no senible default construters.  But left them with meaningless UIDs, to break anyone that doesn't override it.

Of course, if anyone has a better patch, I'm happy to implement it.  At this point, the serialization changes for [math] should be almost done.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@785473 13f79535-47bb-0310-9956-ffa450edef68

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602e3fec32294ab720a30c11b743cd04140f3ff7
1245006272
Phil Steitz
Added Genetic Algorithm implementation.
JIRA: MATH-207
Contributed by David Stefka

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@784604 13f79535-47bb-0310-9956-ffa450edef68

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62bed05b1491a68d1416392e3e4cb2665f995010
1244723742
Luc Maisonobe
removed remaining references to DenseXxx{Matrix/Vector}

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@783741 13f79535-47bb-0310-9956-ffa450edef68

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dbae4b01341d9d72e52d1e07a15d5023deca3d92
1244710442
Luc Maisonobe
renamed RealMatrixImpl, RealVectorImpl, FieldMatrixImpl and FieldVectorImpl
into Array2DRowRealMatrix, ArrayRealVector, Array2DRowFieldMatrix and ArrayFieldVector
as suggested by Sam in http://markmail.org/message/hh37ivxpzaoapekj

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@783702 13f79535-47bb-0310-9956-ffa450edef68

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3325ab51b3a0037ddd7dad8ab2269edcabad8fa0
1244707565
Luc Maisonobe
switch the matrix type built by factory methods depending on the dimension

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@783680 13f79535-47bb-0310-9956-ffa450edef68

3325ab51b3a0037ddd7dad8ab2269edcabad8fa0
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22f406556284019a8d5eb2dfcce01f2feef947ae
1244707524
Luc Maisonobe
renamed Dense{Real/Field}Matrix into Block{Real/Field}Matrix
as suggested by Phil in http://markmail.org/message/iibgiz4bsv6hjjvh

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@783678 13f79535-47bb-0310-9956-ffa450edef68

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9494baedb5ca3346ce6817f5bf03c73918f91d8b
1244670273
Luc Maisonobe
prevent too small (sometimes exactly 0) steps to occur
when an event is within convergence tolerance to the step end

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@783529 13f79535-47bb-0310-9956-ffa450edef68

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8dad16f5e74feaaa5bf36afb1f2d384848247318
1244667509
Luc Maisonobe
fixed a forgotten field in copy constructor

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@783516 13f79535-47bb-0310-9956-ffa450edef68

8dad16f5e74feaaa5bf36afb1f2d384848247318
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df0fca305cc19bf19951cb00ce4494c69c6b7acf
1244576635
Luc Maisonobe
fixed checkstyle errors

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@783114 13f79535-47bb-0310-9956-ffa450edef68

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b2d25e07988b85fe3dee62ffaa7586144eb44535
1244575999
Luc Maisonobe
added support for max number of evaluations to ODE integrators

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@783103 13f79535-47bb-0310-9956-ffa450edef68

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1244561789
Luc Maisonobe
removed unneeded import

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@783044 13f79535-47bb-0310-9956-ffa450edef68

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91dd8046bc9b848caf59562639aaec7e60ac4f5b
1244561695
Luc Maisonobe
removed unneeded import


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@783041 13f79535-47bb-0310-9956-ffa450edef68

91dd8046bc9b848caf59562639aaec7e60ac4f5b
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4eb810e816aac9329ae05715a8ebb8aa7c400031
1244409858
William Barker
Serialization changes for optimization.

Still need to add junit test, but for this it doesn't look like a blocker.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@782468 13f79535-47bb-0310-9956-ffa450edef68

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0a76fb6b5fa8f56cb4420a48f92e4e2bc7f82cbc
1244402375
Luc Maisonobe
changed again the Adams-Bashforth and Adams-Moulton integrators
they now both use Nordsieck representation
this is the first really usable implementation, it still integrates only with fixed stepsize,
but thanks to Nordsieck representation they will be improved to adaptive stepsize soon

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@782442 13f79535-47bb-0310-9956-ffa450edef68

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a93e3a5fe01af201940b9640046aaf0d0028b9f8
1244402114
Luc Maisonobe
removed step interpolator prototype

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@782438 13f79535-47bb-0310-9956-ffa450edef68

a93e3a5fe01af201940b9640046aaf0d0028b9f8
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e6df7ccd955bcd06e41131fc34f224515513bd38
1244401997
Luc Maisonobe
added serialization test
changed tests to Junit 4

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@782435 13f79535-47bb-0310-9956-ffa450edef68

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efe535568ab2138f45b21836680f308a62564f8a
1244401938
Luc Maisonobe
improved max errors computations: previously, NaN values induces the error update to be skipped, thus leading to artificially good results

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@782434 13f79535-47bb-0310-9956-ffa450edef68

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e219588914049787df1bcfab6f04b5832def1e34
1244401823
Luc Maisonobe
updated step interpolators implementations tests to latest interface changes

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@782433 13f79535-47bb-0310-9956-ffa450edef68

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d503a9472f496055201a017140946c44695755fb
1244401706
Luc Maisonobe
updated step interpolators implementations to latest interface changes

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@782432 13f79535-47bb-0310-9956-ffa450edef68

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daf025e7eb5c951a08eb630af00210ee2c5238db
1244401477
Luc Maisonobe
added a lazy evaluation for step interpolators
moved the possible exceptions from setInterpolatedTime (which now does almost nothing) to getInterpolatedState and getInterpolatedDerivatives (which now do the evaluations)
renamed an internal function to make sure people overriding it don't forget to set the derivatives


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@782431 13f79535-47bb-0310-9956-ffa450edef68

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1244146730
Luc Maisonobe
removed a print

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bd8f05c4dda4b5b00e525e08fd6c95d256423c97
1244146049
Luc Maisonobe
fixed detection of not positive definite matrices
JIRA: MATH-274

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@781845 13f79535-47bb-0310-9956-ffa450edef68

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75f5c92aeb47e264c196a8c38a495adac89f493c
1244019968
Luc Maisonobe
Fixed a wrong check for basic variables
JIRA: MATH-273

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@781304 13f79535-47bb-0310-9956-ffa450edef68

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d0c52c49b7efa5367b154443bba9910cb19e6419
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Luc Maisonobe
fixed javadoc link

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@781167 13f79535-47bb-0310-9956-ffa450edef68

d0c52c49b7efa5367b154443bba9910cb19e6419
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08a57af7ffc839086ce9ec351ad911fcfe547017
1243975605
Luc Maisonobe
removed unneeded import statement

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@781160 13f79535-47bb-0310-9956-ffa450edef68

08a57af7ffc839086ce9ec351ad911fcfe547017
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a12bab734ec9c6853f6be584430425389406f0ef
1243975553
Luc Maisonobe
reenabled tests
removed a development test that was committed by error

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@781159 13f79535-47bb-0310-9956-ffa450edef68

a12bab734ec9c6853f6be584430425389406f0ef
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63c5ec9834b0aac3e2ad8187bbbc94046c1fe95b
1243975439
Luc Maisonobe
fixed event handling during multistep restart phase,
the interpolator used for regular integration and the interpolator used during restart went out of sync

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@781158 13f79535-47bb-0310-9956-ffa450edef68

63c5ec9834b0aac3e2ad8187bbbc94046c1fe95b
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4e6ce1508bb1a9e9f6b1809ea1dbb3ed075b2b42
1243975335
Luc Maisonobe
fixed corner cases when events occur right at integration start
(which in fact always happen when a resetting event forces a restart just after the event has occurred)

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@781157 13f79535-47bb-0310-9956-ffa450edef68

4e6ce1508bb1a9e9f6b1809ea1dbb3ed075b2b42
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3c384f846f49ba673a9805c8d03d6a2156770a70
1243975181
Luc Maisonobe
fixed an infinite loop error that occurred when an event that reset the state occurs exactly at multistep initialisation start

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@781156 13f79535-47bb-0310-9956-ffa450edef68

3c384f846f49ba673a9805c8d03d6a2156770a70
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24a6a2692e942969f5c39bd88d3d12ac0f0bf0d9
1243971450
Luc Maisonobe
Fixed a problem when setting some variables (several variables were set instead of only one)
JIRA: MATH-272

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@781135 13f79535-47bb-0310-9956-ffa450edef68

24a6a2692e942969f5c39bd88d3d12ac0f0bf0d9
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1b48dbabe18ca22396bd737df73e241cfdf8c0c5
1243968803
Luc Maisonobe
merged the decomposition package back to the linear package.
This will allow later improvements as decomposition algorithms
will be able to see implementation details when more efficient
matrices implementations (for example based on blas) are added

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@781122 13f79535-47bb-0310-9956-ffa450edef68

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0832bf9bacfa9d8fc6cb3b9d0ee82756a7bca5ad
1243933586
Luc Maisonobe
fixed serialization problems

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@780976 13f79535-47bb-0310-9956-ffa450edef68

0832bf9bacfa9d8fc6cb3b9d0ee82756a7bca5ad
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62199a35c1e2b5ad445b631c5edec327e0c38686
1243933537
Luc Maisonobe
removed unneeded import statements

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@780975 13f79535-47bb-0310-9956-ffa450edef68

62199a35c1e2b5ad445b631c5edec327e0c38686
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:100644 100644 933fc68d19ed7c4e48395f4271948cfbac0aecb0 9cad871572f699f96195f1fd90e3acd48205a560 M	src/java/org/apache/commons/math/random/RandomVectorGenerator.java
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b2e4c7c1b81d8b54ad6dcd589c0d730c764fad08
1243933411
Luc Maisonobe
added utility methods to help serialize/deserialize classes that
have RealVector/RealMatrix fields (possibly final) since the
top level interfaces are not serializable anymore

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@780974 13f79535-47bb-0310-9956-ffa450edef68

b2e4c7c1b81d8b54ad6dcd589c0d730c764fad08
:100644 100644 a1c510193d9d14e9f2fafa6f053fba866716eb97 ac1215746f733988c5dd8aa052188be73358d9bd M	src/java/org/apache/commons/math/linear/MatrixUtils.java

7d10ae8a324878c35983eb2d81d9e943bf3844ed
1243933283
Luc Maisonobe
fixed javadoc copy/paste error

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@780973 13f79535-47bb-0310-9956-ffa450edef68

7d10ae8a324878c35983eb2d81d9e943bf3844ed
:100644 100644 1464af2db3e36eab7c33f85ead810ce24cbc4287 b40334005d2a7b22ad391de2b18845adbf31339e M	src/java/org/apache/commons/math/linear/RealVectorImpl.java

efabab28b83811b92fb2c858226b04b42bab21e6
1243917552
William Barker
More serialization changes.

Not clear what I should do with RandomAdaptor.  So I've let it remained broken (no public no-opt construtor, but Serializable).

Feel free to -1 anything that I've stripped Serializable from and you care about, but I think I've been pretty conservative.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@780933 13f79535-47bb-0310-9956-ffa450edef68

efabab28b83811b92fb2c858226b04b42bab21e6
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:100644 100644 e54b8388eb817eed59801e349106500312c34b16 b96264583e5b916fa1f85cd830491b375a2a396f M	src/test/org/apache/commons/math/random/RandomAdaptorTest.java
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:100644 100644 7417060baa3ed22b9253f38d286350a611b8e78f b70e7911f66e9bafd7848995356456ee6b5afecc M	src/test/org/apache/commons/math/random/TestRandomGenerator.java
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06941303608fe910b65022681b904dfe57bef09f
1243869055
Luc Maisonobe
fixed javadoc warnings

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@780674 13f79535-47bb-0310-9956-ffa450edef68

06941303608fe910b65022681b904dfe57bef09f
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:100644 100644 fe1970db108316e01551bb7a5ece62909eda0bd3 44908b87189dc3008f01e6cd12bb12012bf0e0bc M	src/java/org/apache/commons/math/optimization/general/GaussNewtonOptimizer.java
:100644 100644 b38e967f7959ba79ea80ad7c9ffbeaacb5dc816a 0dc76ed3d42aee446c6b8cb57f3b1c23db367530 M	src/java/org/apache/commons/math/optimization/general/NonLinearConjugateGradientOptimizer.java
:100644 100644 52b2b9daabc923e42b759bffb8db348c39aeb2df b933e00a642a5f2a1224fe1f230b5945f0dee0fe M	src/java/org/apache/commons/math/optimization/linear/LinearOptimizer.java
:100644 100644 8618e3743bb79e58e0ef0203385f456172f2e3ce 79325f02ffe4618bb831f1720c473ed90337ebe5 M	src/java/org/apache/commons/math/util/DefaultTransformer.java

b9f4e914df109dedee24e7b5674d6cfdee170ff9
1243862659
Luc Maisonobe
fixed javadoc

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@780645 13f79535-47bb-0310-9956-ffa450edef68

b9f4e914df109dedee24e7b5674d6cfdee170ff9
:100644 100644 0578aac10ba2eb3b1090c87736592b4146b48521 79c3de0a54e948297d1dd7b056bdc120db20fd91 M	src/java/org/apache/commons/math/linear/SparseFieldMatrix.java
:100644 100644 fb678cd0db726cf060d2216b6510ff6ac91a81dc e8213c54fbb7400529e28f0c0ec434ad17a33029 M	src/java/org/apache/commons/math/linear/SparseFieldVector.java
:100644 100644 c6f926000318e49e030fd68b0bbba5e7097d07e2 bc5f826a6f4929a87ec5a6de9750bb834ae2d612 M	src/java/org/apache/commons/math/stat/Frequency.java
:100644 100644 fd13fa9bff6df5f881aacb6e33e1ef96eb42fdc3 da25a736cd66e47370718c733f1fc987fc8e91ce M	src/java/org/apache/commons/math/stat/descriptive/moment/VectorialCovariance.java
:100644 100644 9293e67a564b4b9c22f1a254b4583181481aae85 eaf73edf0a1b22dcb3b355e96c495dece3358e38 M	src/java/org/apache/commons/math/stat/descriptive/moment/VectorialMean.java

0aab32b17cdece9ea5e318caf0d2c62f12d66e91
1243862597
Luc Maisonobe
remove impossible serialization
(function is no more serializable)

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@780644 13f79535-47bb-0310-9956-ffa450edef68

0aab32b17cdece9ea5e318caf0d2c62f12d66e91
:100644 100644 7c00b3634c864d6c4ed6ef27126d9ed008c714e9 561ac88801f7ac02ae157f33fc0e3bcb100df449 M	src/java/org/apache/commons/math/optimization/LeastSquaresConverter.java

218b803548add3b94961a85f14cd14135333194d
1243862463
Luc Maisonobe
updated filter after replacement of MultistepStepInterpolator by NordsieckStepInterpolator

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@780643 13f79535-47bb-0310-9956-ffa450edef68

218b803548add3b94961a85f14cd14135333194d
:100644 100644 6651be6db6881ea90a9cb62d1cf62932ac60fb3f 226827e07b3ce8db884910b452f82da6a8f18724 M	findbugs-exclude-filter.xml

2d48981a85c36bb55ea963394d57edb8e044ead1
1243860512
Luc Maisonobe
removed unneeded import statements

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@780637 13f79535-47bb-0310-9956-ffa450edef68

2d48981a85c36bb55ea963394d57edb8e044ead1
:100644 100644 7c8904f15d5858dc057de58a4ec132dc409f5a70 ea6611962fafe26f6c30ebe6003449e833f340f9 M	src/java/org/apache/commons/math/stat/descriptive/AbstractStorelessUnivariateStatistic.java
:100644 100644 24f044ed4b4dbe22335e1e759af69f9f2aaf206b 93ca20ec4687238b1f9c96221044c784e0c6a40f M	src/test/org/apache/commons/math/linear/DenseFieldMatrixTest.java
:100644 100644 78e53cff4385b3f51dcebe8b886212bf3ae36e2c 20edd38d088480ac0f0ade54b9f1abfcd78780f6 M	src/test/org/apache/commons/math/linear/DenseRealMatrixTest.java
:100644 100644 6e42d7d73c6d35adab0142fb177c5e5275e3b5b7 9d7254f615f1a4b4a6de12c3ec20827137532e64 M	src/test/org/apache/commons/math/linear/FieldMatrixImplTest.java
:100644 100644 b6d57ebb3c68c731ee578ebc32d978fc7a5903e0 43197255a1ef290dddb1a050f116b17f3cb9eb4f M	src/test/org/apache/commons/math/linear/FieldVectorImplTest.java
:100644 100644 df81c2ad13df7c8867bf7d6752c0f6e60e383afd 7ea01a2ba44eb7f9d7f5980b3ea694262df40b93 M	src/test/org/apache/commons/math/linear/RealMatrixImplTest.java
:100644 100644 8db19a4264e0adca86565c3545991fee82e6c8ef 8b67f3732f6f856416a86ac8029297afbeccbe9b M	src/test/org/apache/commons/math/linear/RealVectorImplTest.java
:100644 100644 01ea247528306ebbda1c2268c242447942a3c086 ff537e7c67af032c61829402952100fc1e932456 M	src/test/org/apache/commons/math/linear/SparseRealMatrixTest.java
:100644 100644 e0b1e352b1e999d210324c61b79acf4b13f730e5 272c450fde12fe5045d306686c34f7ac3c9047c4 M	src/test/org/apache/commons/math/linear/SparseRealVectorTest.java

3dd44176dcf2d2d5a5d4d4acbf325612744c62d7
1243817222
William Barker
Serialization changes for stats

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@780541 13f79535-47bb-0310-9956-ffa450edef68

3dd44176dcf2d2d5a5d4d4acbf325612744c62d7
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:100644 100644 0d8228d154ef7e34b50fcbc6aef791797173f77e ed790e33ecfe0d1ff3af081d436e17100316619d M	src/test/org/apache/commons/math/stat/descriptive/moment/VectorialCovarianceTest.java
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8b52d99aa2ac66b04457eb5c0fa49e004d51c8b3
1243814940
William Barker
change to Java 5 compatible

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@780534 13f79535-47bb-0310-9956-ffa450edef68

8b52d99aa2ac66b04457eb5c0fa49e004d51c8b3
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05abccebc3e83f016f5922ac31bf78fe8faf8936
1243808298
William Barker
Clean up linear serialization tests

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@780521 13f79535-47bb-0310-9956-ffa450edef68

05abccebc3e83f016f5922ac31bf78fe8faf8936
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Luc Maisonobe
added an error message for Adams-Bashforth and Adams-Moulton integrators

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1243807881
Luc Maisonobe
removed obsolete NordsieckTransformer

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Luc Maisonobe
removed obsolete MultiStepInterpolator

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Luc Maisonobe
removed obsolete MultiStepInterpolator

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7b54b47510f9bfaf72d1386f29bbe7a016036b95
1243807646
Luc Maisonobe
completely redesigned Adams-Bashforth and Adams-Moulton integrators
they are now provided by a single class and use the Nordsieck form
with higher derivatives at current step instead of classical form
with only first derivatives but at several steps.
The implementation is simpler for both the integrators and the step
interpolator and it allows a future enhancement with adaptive stepsize.

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1243807350
Luc Maisonobe
added a step interpolator for multistep methods in Nordsieck form

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1243807277
Luc Maisonobe
updated tests to take into account serialization changes and the new
derivatives consistency check
these tests have been converted to Junit4

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1243807143
Luc Maisonobe
added a general test utility for checking derivatives consistency across all step interpolators

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1243807012
Luc Maisonobe
added a new test problem with polynomial behavior

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1243806960
Luc Maisonobe
fixed serialization of step interpolators to allow processing them
before the associated integrator update their internal state
(i.e. when currentState is still null)

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1243806816
Luc Maisonobe
added a missing @since

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1243708703
Luc Maisonobe
use the conversion functions from MatrixUtils

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f3d9ac637dbe56de11f0ea97cde4fd0b83bc8233
1243708578
Luc Maisonobe
added conversion utility functions for
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  FieldMatrix<BigFraction> to RealMatrix

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1243453647
Luc Maisonobe
Added a way to retrieve the limited the number of functions evaluations in optimizers
(the limited number of iterations could already be retrieved)

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47cf7b055e40914e2d61dbb3e3a2f846cbf21924
1243450488
Luc Maisonobe
Added a way to limit the number of functions evaluations in optimizers
(the number of iterations could already be limited)


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1243432490
Brent Worden
corrected versioning in DOAP

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1243290290
William Barker
Serializable changes to util

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William Barker
Serializable changes for linear.decomposition

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c0f3bdaed8cccc8ca76e8d060e96a657fa0f2476
1243257607
Phil Steitz
Added trigamma, javadoc fixes for digamma.  JIRA: MATH-267.  Patched by Ted Dunning.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@778416 13f79535-47bb-0310-9956-ffa450edef68

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William Barker
Serializable changes for FieldVector and FieldMatrix

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@778256 13f79535-47bb-0310-9956-ffa450edef68

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55ba297dacfd71b71466c964f6b1c926ca656ae4
1243183492
Luc Maisonobe
removed Serializable from matrix visitors interfaces and classes
it doesn't make sense for these objects as they are intended to be transient

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@778191 13f79535-47bb-0310-9956-ffa450edef68

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Luc Maisonobe
removed obsolete imports

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@778187 13f79535-47bb-0310-9956-ffa450edef68

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Luc Maisonobe
removed tab characters that crept in at r776939

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@778185 13f79535-47bb-0310-9956-ffa450edef68

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Luc Maisonobe
added missing @Override

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@778184 13f79535-47bb-0310-9956-ffa450edef68

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Phil Steitz
added missing since tags.

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921b72335944cbbdaed6fdaac89882466c36e230
1243144999
Phil Steitz
Added digamma function.
JIRA: MATH-267
Contributed by Ted Dunning


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@778091 13f79535-47bb-0310-9956-ffa450edef68

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4107cb54fd39d551e0074424b746137aff040faa
1243141461
Phil Steitz
Added support for Spearman's rank correlation.
JIRA: MATH-136
Thanks to John Gant


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@778085 13f79535-47bb-0310-9956-ffa450edef68

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Phil Steitz
removed duplicate assertion.

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William Barker
Serializable changes for RealMatrix

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@778071 13f79535-47bb-0310-9956-ffa450edef68

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William Barker
Serializable changes for RealVector

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@778058 13f79535-47bb-0310-9956-ffa450edef68

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Sebastian Bazley
Move Serializable from interface to implementations

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@777895 13f79535-47bb-0310-9956-ffa450edef68

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Sebastian Bazley
Move Serializable from interface to implementations

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@777894 13f79535-47bb-0310-9956-ffa450edef68

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Sebastian Bazley
Move Serializable from interface to implementations

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@777892 13f79535-47bb-0310-9956-ffa450edef68

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1243001096
Sebastian Bazley
ReMove Serializable from interface
Implementations already implemented it

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a780db15fc1a59d729cd90d10a2e1731fc1f35da
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Sebastian Bazley
Move Serializable from interface [New to 2.0] to implementations (some existing)


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Sebastian Bazley
Move Serializable from interface to implementations
[New to 2.0]

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c808a78dbb86d3aa897ea55a67620573c05105ca
1242999723
Sebastian Bazley
It's a new interface (target release 2.0, not 3.3!)

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Sebastian Bazley
Drop Serializable. 
Interface is new to 2.0, and not implemented except in test code, so no need to do anything further

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Luc Maisonobe
typo

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Sebastian Bazley
Move Serializable from interface to implementation

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William Barker
I've made SparseRealVector and SparseRealMatrix to be empty marker interfaces.

I've left OpenMapRealVector.getSparcity, since I'd like to use it for benchmarking, and it doesn't hurt anyone else now.


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Luc Maisonobe
added a test for the detection of non-invertible transforms
use Junit 4 style for tests

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379ad27ea0279c786847bf763cca4f26789ac151
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Luc Maisonobe
trigger an error when the transform is not invertible

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780e02b61d84b04d6ec22d36d56505e9f0037f57
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William Barker
Changing DenseRealMatrix to return a specific type, instead of interface type.

I beleive the consensus is to leave RealMatrixImpl and RealVectorImpl alone for now (since they were in 1.2), so that's what I'm doing.


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Brent Worden
re-enabled unit test.  changed testutils to use own assertEquals method to safely compare NaN values.

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901b8a9c866f51e3496e236e63298778639e84aa
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Phil Steitz
Disabled test that fails under GUMP.

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Luc Maisonobe
improved hints for deprecated methods

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0fa07f93e27089455c14068064f64e4b9284b995
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Luc Maisonobe
typo

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Luc Maisonobe
added missing @Override

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fa13ca04770ba71ae53ee76f248ca6853272367a
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Phil Steitz
Added rank transformations.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@776311 13f79535-47bb-0310-9956-ffa450edef68

fa13ca04770ba71ae53ee76f248ca6853272367a
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Luc Maisonobe
removed unneeded import

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Luc Maisonobe
removed unneeded import

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1757b973af087cf4086a3c7cc99a7525ce731617
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73d5ab1ec6d0dcffa7b4169282e656930660a9a3
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William Barker
Ok, so laking add/subtract tests now.  I'll try to add later, but checking in the existing tests so that [math] will at least build.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@775787 13f79535-47bb-0310-9956-ffa450edef68

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1ac183419252ac503baa309df8de529907c2d406
1242607361
William Barker
Sparse Matrix/Vector refactoring with mostly return types changed.

Thought that getSparcity was meaninful for SparseRealVector, and added a marker for SparseRealMatrix shape.  Feel free to -1 either ;).

I found an error in the unit tests, so will commit the changes there shortly, after a review.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@775784 13f79535-47bb-0310-9956-ffa450edef68

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446457d7747003d33d1a57db5bdd694b300d2f96
1242598370
William Barker
Initial refactoring of sparse matrix/vector

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@775768 13f79535-47bb-0310-9956-ffa450edef68

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23381b83eda18f37ec58f9590f98bb4479cf384a
1242591574
Luc Maisonobe
simplified DifferentiableMultivariateVectorialFunction
the gradient and partial derivaritves can be retrieved from the jacobian
and adding them at the interface level was cumbersome for implementing
optimization problems.
Now users need to provide only the jacobian method

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Phil Steitz
Javadoc fix.

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Luc Maisonobe
suppressed two warnings

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1241881542
Luc Maisonobe
check computed variances in test

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1241863024
Luc Maisonobe
completed internationalization of all error messages

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1241603008
Luc Maisonobe
improved error messages

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1241602813
Luc Maisonobe
replaced matrix by vector where possible

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1241580415
William Barker
Adding unit test for SparseFieldMatrix


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1241433736
Luc Maisonobe
minor style fixes (braces, javadoc ...)

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William Barker
Adding unit test for SparseFieldVector

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William Barker
Adding equals and hashCode

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1241389645
William Barker
Adding sparse field implememtations

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Luc Maisonobe
improved error messages

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1241368128
Luc Maisonobe
fixed various checkstyle and findbugs errors

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1241292891
Luc Maisonobe
added a clustering package with an implementation of k-means++
JIRA: MATH-266

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@770979 13f79535-47bb-0310-9956-ffa450edef68

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Luc Maisonobe
Added distance1, distance and distanceInf utility methods for double and int arrays in MathUtils
JIRA: MATH-265

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Luc Maisonobe
updated documentation for ODE after recent changes

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Luc Maisonobe
simplified Nordsieck transformer
extended its domain to handle several layouts for multistep state

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Luc Maisonobe
added getNorm1, getNormInf, distance1 and distanceInf to the Vector3D class

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Luc Maisonobe
typo in HTML 4 entity

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Luc Maisonobe
Added an utility equality method between double numbers using tolerance
in ulps (Units in Last Position) 
JIRA: MATH-264

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Luc Maisonobe
typo

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William Barker
Forgot to include licence :(

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William Barker
Adding unit test for OpenIntToFieldHashMap

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Luc Maisonobe
typo

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1240848243
Luc Maisonobe
event handlers in ODE now also provide the switching function variation
(increasing/decreasing) when an event occurs

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1240842745
Luc Maisonobe
reduced test size

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b53f5d7a42e64a8a2dc259f93f500a54447095b5
1240829512
Phil Steitz
Added AggregateSummaryStatistics class to support aggregation of SummaryStatistics. 
JIRA: MATH-224
Reported by Andre Panisson
Patched by John Bollinger


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@768921 13f79535-47bb-0310-9956-ffa450edef68

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1240766099
Phil Steitz
Improved error messages.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@768727 13f79535-47bb-0310-9956-ffa450edef68

6ae7eb040dc8b2aef45695cf6bf657d44b1a7a4a
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1240702096
William Barker
Javadoc fixes, sorry for the noise

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@768625 13f79535-47bb-0310-9956-ffa450edef68

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1240700109
William Barker
Need to find out why autoprops isn't working

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@768622 13f79535-47bb-0310-9956-ffa450edef68

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1240699778
William Barker
Adding backing class for sparse Field vectors and matricies

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1240688378
Luc Maisonobe
added javadoc

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1240678759
Luc Maisonobe
fixed an Adams-Moulton order error, it was one unit too large
and inconsistent with the order of the underlying predictor

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1240624883
Sebastian Bazley
Javadoc fixes

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1240624844
Sebastian Bazley
Unnecessary casts

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1240624726
Sebastian Bazley
Can't inheritDoc unless implementing or overriding something ...

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Sebastian Bazley
MATH-261 - start adding some generics to Frequency

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William Barker
Fix equals and hashcode to do exact comparisons

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Luc Maisonobe
replaced a Java6 specific signature with its Java5 counterpart
(Array.newInstance(Class<T>, int ...)  --> (Array.newInstance(Class<T>, int[])

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1240261113
Luc Maisonobe
fixed warnings about serial version ID

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1240261053
Luc Maisonobe
fixed missing dimension checks

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Luc Maisonobe
deprecated tests for deprecated methods
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1240258789
Luc Maisonobe
added DenseFieldMatrix

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1240258732
Luc Maisonobe
use the buildArray method from base class
it has better generic parameter specification
and does initialize array elements

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Luc Maisonobe
use a simpler syntax for a generic static test function

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1240258539
Luc Maisonobe
converted buildArray to static, so it can be used from other static methods

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Luc Maisonobe
optimized isInfinite for NaN vectors
reverted hashcode back to its previous behavior to avoid breaking consistency with equals

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Phil Steitz
Removed tabs.

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1240159796
Luc Maisonobe
fixed checkstyle errors

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1240159380
Luc Maisonobe
removed TAB characters that crept in as of r762194 two weeks ago

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1240159180
Luc Maisonobe
added support for any kind of field in linear algebra
we can now use FieldMatrix<Fraction> and use exact LU-decomposition
on such matrices to solve linear systems

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4877e676807b1c0920787c315e508a20823e56b3
1240158877
Luc Maisonobe
Added the generic Field/FieldElement interfaces on top
of existing Complex, Fraction and BigFraction
Added a new BigReal class wrapping a BidDecimal and implementing FieldElement

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@766483 13f79535-47bb-0310-9956-ffa450edef68

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57efba92ca35ec177fd8c8b4a39e97188152ec6b
1240158719
Luc Maisonobe
added Field and FieldElement interfaces to allow algorithms
operate on any type of field.
This change is related to the discussion on dev list
http://markmail.org/message/h2rmq6wo7nwqzx4w

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@766482 13f79535-47bb-0310-9956-ffa450edef68

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003c98d087ddbe011263bf4882de190c7f3e6cbe
1240067832
Luc Maisonobe
fixed an error in SparseRealVector.isInfinite, NaN was not checked beforehand
fixed an error in SparseRealVector.hashcode, code did not depend on vector entries
fixed tests accordingly

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@766337 13f79535-47bb-0310-9956-ffa450edef68

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238197ec9d6d2e538a4a9e6661d4827e0215ca1c
1240054676
Sebastian Bazley
Remove obsolete Maven1 files

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178ce1c47881efeeb667f1196bf2b33b90d74550
1240000312
Luc Maisonobe
removed tests not meaningful for sparse vectors
reactivated some commented-out tests

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1239989361
Sebastian Bazley
Use UTF-8 encoding for copying resources to avoid platform dependency

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1239975886
Sebastian Bazley
MATH-259 - throw IllegalArgument rather than ClassCast to better retain original behaviour

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1239975299
Sebastian Bazley
MATH-259 - check for Comparable when adding values

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1239973646
Sebastian Bazley
Make HashMap final as it is only set in the ctors
Document behaviour of getCount(Object v) if v is not comparable
Save value of getSumFreq() from DIV/0 check so we don't calculate it twice

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Sebastian Bazley
Remove non-thrown throws clauses

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Sebastian Bazley
Parameterise raw type

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Sebastian Bazley
Remove unnecessary semi-colons

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Sebastian Bazley
Unused import

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Sebastian Bazley
Remove unnecessary null checks

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Phil Steitz
Fixed some errors, improved content.

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Phil Steitz
Clarified javadoc, added tests. JIRA: MATH-258

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Phil Steitz
Fixed internal links and added covariance and correlation section.

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Phil Steitz
Made method names consistent, added methods to default bias-correction.

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Phil Steitz
Changed method name to be consistent with Covariance, added double[][] compute method.

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Phil Steitz
Fixed incorrect type spec, simplified references.

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Phil Steitz
Dropped extraneous parens.

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Phil Steitz
Dropped extraneous parens.

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Phil Steitz
Restored some double casts to improve ensure correctness does not depend on order of operations or literal conversion, dropped uneccesary parens.

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Luc Maisonobe
added a transformer between Nordsieck form and multistep form
for state history in multistep ODE integrators
(this will help implementing adaptive stepsize multistep integrators)

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Luc Maisonobe
removed unused import statements

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Luc Maisonobe
added a threshold for comparisons in Simplex solver
Jira: MATH-246

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Brent Worden
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fixed findbugs warnings and added more explanation about the corresponding behavior in javadoc

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Luc Maisonobe
added missing javadoc

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Luc Maisonobe
Fixed inconsistent access to multidimensional array in FastFourierTransformer

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Luc Maisonobe
fixed typo in error message

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Sebastian Bazley
Cannot be null here

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Sebastian Bazley
Make private static fields final.

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Sebastian Bazley
Remove unnecessary casts and unnecessary semi-colons

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Sebastian Bazley
Remove unnecessary casts, unnecessary throws and unnecessary semi-colons

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584e732456ca76a961ae296a1c2c059f0ddb2949
1238950415
Luc Maisonobe
Greatly improved multiplication speed for sparse matrices
Jira: MATH-248

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@762117 13f79535-47bb-0310-9956-ffa450edef68

584e732456ca76a961ae296a1c2c059f0ddb2949
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f46ebfe991c8078e254143385ffd61c42cb48f88
1238950133
Sebastian Bazley
Remove unnecessary casts

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@762116 13f79535-47bb-0310-9956-ffa450edef68

f46ebfe991c8078e254143385ffd61c42cb48f88
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55a5e54455c21833b407fbd52b5e66888f211ec7
1238945586
Luc Maisonobe
Fixed threading issues with MathException and MathRuntimeException
Jira: MATH-253

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@762107 13f79535-47bb-0310-9956-ffa450edef68

55a5e54455c21833b407fbd52b5e66888f211ec7
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382b57344ca9dbb3ef669d0fa41e3124c3867fb1
1238944563
Luc Maisonobe
Fixed threading issues with UnivariateRealSolverUtils factory
Jira: MATH-254

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@762102 13f79535-47bb-0310-9956-ffa450edef68

382b57344ca9dbb3ef669d0fa41e3124c3867fb1
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6fbda16e8533950829ef3ba09722d39672bfaf91
1238944047
Luc Maisonobe
fixed typo

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@762100 13f79535-47bb-0310-9956-ffa450edef68

6fbda16e8533950829ef3ba09722d39672bfaf91
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6750484753d78a0ff278506137aceccfa14ee4f0
1238942169
Luc Maisonobe
Reduced visibility of MessagesResources_fr.contents field to private
JIRA: MATH-255

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@762096 13f79535-47bb-0310-9956-ffa450edef68

6750484753d78a0ff278506137aceccfa14ee4f0
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da1a5916e45abd0fc0adcfb56eeeab8b14314a0e
1238941743
Luc Maisonobe
added Fraction.toString()
Jira: MATH-256

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@762095 13f79535-47bb-0310-9956-ffa450edef68

da1a5916e45abd0fc0adcfb56eeeab8b14314a0e
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9c8d2c79c1ef565337599849cd066ff63b8d5816
1238941218
Luc Maisonobe
added missing @Override annotations

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@762087 13f79535-47bb-0310-9956-ffa450edef68

9c8d2c79c1ef565337599849cd066ff63b8d5816
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3597812efa15c4422bd3c4900a86f4cc01105ee7
1238879293
Sebastian Bazley
Make private static fields final, as they are not changed currently.
[If they were mutable, this would make the class thread-hostile.]

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@762011 13f79535-47bb-0310-9956-ffa450edef68

3597812efa15c4422bd3c4900a86f4cc01105ee7
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b8711300e4923ede5450bdc89dfcf339445b3430
1238879101
Sebastian Bazley
Might as well make the variable final as it is private and not changed

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@762009 13f79535-47bb-0310-9956-ffa450edef68

b8711300e4923ede5450bdc89dfcf339445b3430
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d3cfb2ad596373fcef8ef0d1d16fcf133de1ae66
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Phil Steitz
Replaced JDK 1.6 constant.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@761994 13f79535-47bb-0310-9956-ffa450edef68

d3cfb2ad596373fcef8ef0d1d16fcf133de1ae66
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9593ad61236471386d5ec2182257951ebfce1f38
1238686239
Luc Maisonobe
fixed a serialization warning

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@761325 13f79535-47bb-0310-9956-ffa450edef68

9593ad61236471386d5ec2182257951ebfce1f38
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d09782308cf5598cfedc6e1238e17312378da684
1238686185
Luc Maisonobe
moved multistep integrator and step interpolator base classes to their corresponding generic package

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@761323 13f79535-47bb-0310-9956-ffa450edef68

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c9255319a6f38f59cf590f30281d5caed4686d93
1238663156
Luc Maisonobe
fixed a missing absolute value in a test threshold

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@761213 13f79535-47bb-0310-9956-ffa450edef68

c9255319a6f38f59cf590f30281d5caed4686d93
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1238596158
Luc Maisonobe
removed the constraint on low degree polynomials
when building Chebyshev, Hermite, Laguerre or Legendre polynomials

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@760901 13f79535-47bb-0310-9956-ffa450edef68

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1238588129
Luc Maisonobe
Added  add/subtract/multiply/divide functions with integer parameters to Fraction

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@760867 13f79535-47bb-0310-9956-ffa450edef68

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2082ade9029fc45bc71fbd4cc415190b22a280bd
1238428136
Luc Maisonobe
optimized some fraction operations (mainly pow)
replaced pow(BigFraction) by pow(double) as it already converted the argument to double upon entry
added tests for pow

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@760016 13f79535-47bb-0310-9956-ffa450edef68

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Luc Maisonobe
Added some utility functions to compute powers with integral types (int, long, BigInteger)

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Luc Maisonobe
added a test parsing very large integers

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1238345508
Luc Maisonobe
Fixed a comparison error when two different fractions evaluate to the
same double due to limited precision.
Jira: MATH-252


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Luc Maisonobe
added proper and improper formats for BigFraction (both parsing and display)

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Luc Maisonobe
removed an unneeded call to reduce()
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1238332273
Luc Maisonobe
removed BigFraction.clone() as the class is guaranteed to be immutable

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Luc Maisonobe
Added a BigFraction class that does not overflow when big numerators or denominators are used.
Jira: MATH-251

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Luc Maisonobe
fixed an error in Simplex algorithm when several ambiguous solutions exist

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Luc Maisonobe
fixed javadoc error

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Luc Maisonobe
removed spurious import clause

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1238109930
Luc Maisonobe
added an implementation of Dantzig's simplex algorithm
to solve constrained linear optimization problems
JIRA: MATH-246

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1238108427
Luc Maisonobe
fixed checkstyle and findbugs errors

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@758912 13f79535-47bb-0310-9956-ffa450edef68

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1a6bb878cee24da57d1fc4fb03fe58d41c83bc2d
1237935409
Luc Maisonobe
updated documentation after changes in the optimization framework
JIRA: MATH-177

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@758074 13f79535-47bb-0310-9956-ffa450edef68

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Luc Maisonobe
improved consistency in class naming with respect to functions in the analysis package

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Luc Maisonobe
added an implementation of a non-linear conjugate gradient optimizer

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1237932908
Luc Maisonobe
updated general algorithms with latest interfaces definitions

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Luc Maisonobe
updated univariate algorithms with latest interfaces definitions

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Luc Maisonobe
updated direct algorithms with latest interfaces definitions

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e90541ee13c8623b54f66b50fad83b9a72b4bfa5
1237932752
Luc Maisonobe
added new simple convergence checkers implementations

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@758053 13f79535-47bb-0310-9956-ffa450edef68

e90541ee13c8623b54f66b50fad83b9a72b4bfa5
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069999454d6a538d14927e7e64c01609da4ba013
1237932676
Luc Maisonobe
improved consistency in class naming with respect to functions in the analysis package

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@758052 13f79535-47bb-0310-9956-ffa450edef68

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04afca038ee4a0c31b862e0e013c8a414db5f747
1237932616
Luc Maisonobe
removed spurious exception in optimization

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@758051 13f79535-47bb-0310-9956-ffa450edef68

04afca038ee4a0c31b862e0e013c8a414db5f747
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faecb297b9c67d111aae9a73553bc4ebec90491a
1237932574
Luc Maisonobe
improved consistency in class naming with respect to functions in the analysis package

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@758049 13f79535-47bb-0310-9956-ffa450edef68

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b219ec6d7d7d6302328f7185604eedabdaac7bbb
1237932399
Luc Maisonobe
removed spurious exception in optimization

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@758047 13f79535-47bb-0310-9956-ffa450edef68

b219ec6d7d7d6302328f7185604eedabdaac7bbb
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06d69c3273aa661eb931fa8466ab543f141d3a27
1237932313
Luc Maisonobe
use a single set of consistent functions definitions in the analysis package
instead of one set in the analysis and another one in optimization


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@758046 13f79535-47bb-0310-9956-ffa450edef68

06d69c3273aa661eb931fa8466ab543f141d3a27
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a22972bab6b827f94bf2c5a644929418ae18b3c0
1237727945
Luc Maisonobe
fixed a forgotten counter update

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@757183 13f79535-47bb-0310-9956-ffa450edef68

a22972bab6b827f94bf2c5a644929418ae18b3c0
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a7faf40b61f445d15d9a210b23fa0008b87e25e2
1237726800
Luc Maisonobe
separated iteration counter from function evaluation counters,
some optimizers are based on gradient/jacobian only and cannot
reliably be protected by monitoring the objective function calls.

We now have two or three counters for each algorithm:
 - iteration counter, which is checked against a max allowance
   to prevent infinite loops if no convergence is reached
 - objective function evaluations, for user information only
 - objective function gradient/jacobian if the function is
   differentiable, for user information only

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@757181 13f79535-47bb-0310-9956-ffa450edef68

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794f8fb4805f2f4c9ec2604d8b9b23ece1453aa8
1237726485
Luc Maisonobe
renamed SimpleValueChecker into SimpleScalarValueChecker
for consistency with the vectorial checker name

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@757180 13f79535-47bb-0310-9956-ffa450edef68

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513511976ddc778f7c52d69bf43db3c3f4b88803
1237152938
Luc Maisonobe
fixed checkstyle and findbugs errors

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@754765 13f79535-47bb-0310-9956-ffa450edef68

513511976ddc778f7c52d69bf43db3c3f4b88803
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b5cf53f629502237cd09ce8ea152f0522198d0e4
1237152887
Luc Maisonobe
updated documentation after the redesign of the optimization package

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@754764 13f79535-47bb-0310-9956-ffa450edef68

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f32c25c23ab75ae08a616621e8a060c7f9ec4e66
1237152811
Luc Maisonobe
added all necessary multi-start optimizers types

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@754763 13f79535-47bb-0310-9956-ffa450edef68

f32c25c23ab75ae08a616621e8a060c7f9ec4e66
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a889c1a539a0834c787a2180e88ce622470348d3
1237151019
Luc Maisonobe
removed a spurious print statement

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@754750 13f79535-47bb-0310-9956-ffa450edef68

a889c1a539a0834c787a2180e88ce622470348d3
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b5783028ce133627ca332ea83ae6d8572c631d4d
1237149227
Luc Maisonobe
fixed typo in package documentation

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@754744 13f79535-47bb-0310-9956-ffa450edef68

b5783028ce133627ca332ea83ae6d8572c631d4d
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32f05fb5f66fa26c15f6e1e8a09d238d5085b101
1237145444
Luc Maisonobe
resurrected the estimation package but with all interfaces and classes deprecated
this will help users switch smoothly to the new optimization.general package

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@754732 13f79535-47bb-0310-9956-ffa450edef68

32f05fb5f66fa26c15f6e1e8a09d238d5085b101
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8541f303370cec9a25f2b32b3d660b3f188913f0
1237144262
Luc Maisonobe
adapted old Levenberg-Marquardt estimator to new top level optimizers API

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@754727 13f79535-47bb-0310-9956-ffa450edef68

8541f303370cec9a25f2b32b3d660b3f188913f0
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8cb418e7fa50aba9977fe073aec66ad3f6e4f07c
1237052307
Luc Maisonobe
adapted the Gauss-Newton optimizer to the new top-level optimization interfaces

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@754500 13f79535-47bb-0310-9956-ffa450edef68

8cb418e7fa50aba9977fe073aec66ad3f6e4f07c
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97686434d3664c6d04810bd746aa740071dd56a9
1237052149
Luc Maisonobe
updated optimization main interfaces to handle scalar and vectorial functions
and to handle functions with or without explicit derivatives

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@754499 13f79535-47bb-0310-9956-ffa450edef68

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1a47f53684b77146c807b20781b2e831523b0b6c
1236125271
Luc Maisonobe
continued refactoring of optimization framework:
 - improved general interfaces at top optimization level
 - added a simple implementation of ConvergenceChecker (ObjectiveValueChecker)
 - added a general multi-start wrapper
 - changed the direct search optimizers to the new interfaces

This work is still not complete yet. The general package classes
are very close to the former design, they have almost not been changed
structurally.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@749850 13f79535-47bb-0310-9956-ffa450edef68

1a47f53684b77146c807b20781b2e831523b0b6c
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95836d833482615c11d46e2e655f3eea06a641d7
1235946082
Luc Maisonobe
added compareTo method with epsilon
JIRA: MATH-247

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@749139 13f79535-47bb-0310-9956-ffa450edef68

95836d833482615c11d46e2e655f3eea06a641d7
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fbe565694aa2721d4a8538eb053171cc8ecfde47
1235675859
Luc Maisonobe
started refactoring of optimization framework:
 - created subpackages optimization.direct, optimization.general,
   optimization.linear (currently empty) and optimization.univariate
 - removed packages analysis.minimization and estimation
 - renamed all Cost-related interfaces/classes into Objective
   (this allows both minimization and maximization)
 - added a few new general interfaces

This work is not complete yet. The direct and general packages classes
are very close to the former design, they have almost not been changed
structurally.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@748274 13f79535-47bb-0310-9956-ffa450edef68

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911f0fe11146590554ec11d1277d6e2ba55bd7e9
1235532772
William Barker
epsilon needs to be set before calling isZero, plus copy epsilon for append

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@747650 13f79535-47bb-0310-9956-ffa450edef68

911f0fe11146590554ec11d1277d6e2ba55bd7e9
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2628b29e876bf69f58727a8ef9d63924f8f87a27
1235509181
Luc Maisonobe
minor code cleanups
(error messages, javadoc, avoiding array copies, final attributes ...)

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@747544 13f79535-47bb-0310-9956-ffa450edef68

2628b29e876bf69f58727a8ef9d63924f8f87a27
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7ff6d072ece0452874aa2ceeb94eba7305e02cf0
1235247698
Luc Maisonobe
fixed wrong word in javadoc

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@746583 13f79535-47bb-0310-9956-ffa450edef68

7ff6d072ece0452874aa2ceeb94eba7305e02cf0
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6eec202b7d66dbeb4e2c2b4fa4214b359134ea2f
1235247396
Luc Maisonobe
handle NaN and infinities correctly in the MathUtils.equals method with tolerance

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@746582 13f79535-47bb-0310-9956-ffa450edef68

6eec202b7d66dbeb4e2c2b4fa4214b359134ea2f
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Luc Maisonobe
fixed exception type in a test

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@746579 13f79535-47bb-0310-9956-ffa450edef68

8c8e46f65c08a168679b39a0b33a4155922bf3e2
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7f88773d6c3c96c0a2fd24c3e50d1eb80daca11d
1235246474
Luc Maisonobe
replaced Object[] parameters by variable arguments in exceptions constructors
this allows simpler error declaration and removes the need for the strange
null argument with fixed messages

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@746578 13f79535-47bb-0310-9956-ffa450edef68

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58b5609fe8f99aabc990d885bf6c4d85631b7c79
1235224465
Luc Maisonobe
Fixed an error in computing gcd and lcm for some extreme values at integer range boundaries.
JIRA: MATH-243

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@746511 13f79535-47bb-0310-9956-ffa450edef68

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924b6d76a2d44baf858c3aee46ab1439c9641959
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Luc Maisonobe
Added a MathUtils method to check equality given some error bounds
JIRA: MATH-247

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@746506 13f79535-47bb-0310-9956-ffa450edef68

924b6d76a2d44baf858c3aee46ab1439c9641959
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Luc Maisonobe
added a no-args constructor for GaussNewtonEstimator

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@745188 13f79535-47bb-0310-9956-ffa450edef68

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Phil Steitz
Increased sensitivity of test and added another p-value verification.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@744918 13f79535-47bb-0310-9956-ffa450edef68

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1234760989
Phil Steitz
Added Pearsons correlation implemendation. JIRA: MATH-114

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@744802 13f79535-47bb-0310-9956-ffa450edef68

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Phil Steitz
Changed to persist and expose the number of observations in the source dataset.

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Luc Maisonobe
moved the decomposition algorithms in a subpackage of the linear package

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@744768 13f79535-47bb-0310-9956-ffa450edef68

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36ce2d6c7f3547321ab8a31e58f32f69bc0f4986
1234725351
Luc Maisonobe
improved error messages consistency
fixed checkstyle warnings

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@744724 13f79535-47bb-0310-9956-ffa450edef68

36ce2d6c7f3547321ab8a31e58f32f69bc0f4986
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6fce0ba9870aedea135b2001720a9505a3e71a85
1234723231
Luc Maisonobe
fixed findbugs warning

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@744717 13f79535-47bb-0310-9956-ffa450edef68

6fce0ba9870aedea135b2001720a9505a3e71a85
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46b75fa18c316c8e5ad2a288aeaca2684c165429
1234723129
Luc Maisonobe
fixed checkstyle warnings

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@744716 13f79535-47bb-0310-9956-ffa450edef68

46b75fa18c316c8e5ad2a288aeaca2684c165429
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4b1e08ea11ba68f8900b6a6f0fd423715c2c0fd9
1234720412
Luc Maisonobe
added Cholesky decomposition

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@744708 13f79535-47bb-0310-9956-ffa450edef68

4b1e08ea11ba68f8900b6a6f0fd423715c2c0fd9
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0982dbed0d08323eca63a8b05fbe5bd55cb6bfca
1234712632
Luc Maisonobe
removed references to InvalidStateException, they are never thrown
cleaned up exception messages

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@744682 13f79535-47bb-0310-9956-ffa450edef68

0982dbed0d08323eca63a8b05fbe5bd55cb6bfca
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566b8c16d3adc9b60defb78a8dc8bf5b3bcf89e5
1234712390
Luc Maisonobe
moved NotPositiveDefiniteMatrixException to the linear package

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@744681 13f79535-47bb-0310-9956-ffa450edef68

566b8c16d3adc9b60defb78a8dc8bf5b3bcf89e5
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d07f552a2b13801bdef5b5a0b8d213fba7342b0a
1234680375
William Barker
Add working equals to SparseRealVector.

hashCode implementation is minimal, but I can't see a use case for using a SparseRealVector as a key.

Remove unused imports from OpenInToDoubleHashMap.

Some cleanup for optimized methods, and javadoc fixes.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@744614 13f79535-47bb-0310-9956-ffa450edef68

d07f552a2b13801bdef5b5a0b8d213fba7342b0a
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:100644 100644 fee502217dfa5ebba0b396ee1a38db84b7ffcb90 3b8c6c4665c20a17a4f13d9c21111640217b5e36 M	src/test/org/apache/commons/math/linear/SparseRealVectorTest.java

5f4e953b58f3e35ae21481e4df93bf26eea0c573
1234535928
Luc Maisonobe
Failed attempt to implement Strassen matrix multiplication on recursive layout as
described in Siddhartha Chatterjee, Alvin R. Lebeck, Praveen K. Patnala and Mithuna
Thottehodi paper "Recursive Array Layout and Fast Matrix Multiplication".

As of 2009-02-13, this implementation does not work! The padding at left and bottom
sides of the matrix should be cleared after some operations like scalerAdd and is not.
Also there is a limitation in the multiplication that can only process matrices with
sizes similar enough to have the same power of two number of tiles in all three
matrices A, B and C such that C = A*B. These parts have not been fixed since the
performance gain with respect to DenseRealMatrix are not very important, and the
numerical stability is poor.

This may well be due to a bad implementation.

This code has been put in the experimental directory for the record, putting it into
production would require solving all these issues.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@744126 13f79535-47bb-0310-9956-ffa450edef68

5f4e953b58f3e35ae21481e4df93bf26eea0c573
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:000000 100644 0000000000000000000000000000000000000000 2e87190974e142a482ee61a42572ad3d4ebd594d A	src/experimental/org/apache/commons/math/linear/RecursiveLayoutRealMatrixTest.java

2fcdbb07ce96a28d082acf86ee9891e5fb2a341d
1234437714
Phil Steitz
Added correlation package, Covariance class.  JIRA: MATH-114

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@743688 13f79535-47bb-0310-9956-ffa450edef68

2fcdbb07ce96a28d082acf86ee9891e5fb2a341d
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2ece00af52466502db7fcc6c00c6c6bb8f2dbbce
1234234958
William Barker
remove eclipse generated equals since it doesn't work.  Will add a working equals later

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@742837 13f79535-47bb-0310-9956-ffa450edef68

2ece00af52466502db7fcc6c00c6c6bb8f2dbbce
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0dfcb4f19d76ea36e0eaaca8d3ae90956e76f7ef
1234183280
William Barker
Fis some problems with equals for OpenInttoDoubleHashmap.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@742445 13f79535-47bb-0310-9956-ffa450edef68

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f24be14aaa099d18b15ee2cb295c8951a3154866
1234155027
William Barker
Mostly completing the methods that don't make sense if using a sparse vector in the first place.  Initial implementations for equals on the backing store, but it seems it will need more work (since still have to comment out junit tests).  
Making  checkVectorDimensions protected instead of public on all RealVector classes.


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1234121409
Phil Steitz
Exposed sums of squares.

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Phil Steitz
Moved matrix equality tests to TestUtils.

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1233755990
Luc Maisonobe
improved consistency between RealVector and RealMatrix API
JIRA: MATH-245

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1233691160
Luc Maisonobe
applied Cyril Briquet's patch (with slight changes) to improve FastFourierTransform efficiency
JIRA: MATH-216

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1233570620
Luc Maisonobe
javadoc typo

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1233543053
William Barker
revert accedental work-in-progress commit

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1233542568
William Barker
property sets 

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1233542427
William Barker
property sets mostly, some broken method fixes

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1233522835
Luc Maisonobe
added a PolynomialsUtils class providing factory methods for
Chebyshev, Hermite, Laguerre and Legendre polynomials
the code was extracted from mantissa and modified

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@739840 13f79535-47bb-0310-9956-ffa450edef68

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b1d89deddef03a6a3401b4cbf14608fe46a359ad
1233522415
Luc Maisonobe
fixed an error introduced by a recent change in PolynomialsFunction
(the coefficients array is automatically reduced if high degree coefficients are null)

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@739836 13f79535-47bb-0310-9956-ffa450edef68

b1d89deddef03a6a3401b4cbf14608fe46a359ad
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323475fd1cbfd2f59bde7506ef72d50ec501421f
1233521772
Luc Maisonobe
Added add, subtract, negate, multiply and toString methods to PolynomialFunction

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@739834 13f79535-47bb-0310-9956-ffa450edef68

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e4acfb1ab321d1101d2c7a4e24937a54029b225a
1233448087
William Barker
Adding constructors that allow specifing epsilon.
Remove the isZero(int) method, since it is inconsistant with the isZero(double) method, and this class is tightly bound to it's backing store.
Some javadoc fixes.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@739667 13f79535-47bb-0310-9956-ffa450edef68

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1233417222
Sebastian Bazley
Javadoc typos

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@739571 13f79535-47bb-0310-9956-ffa450edef68

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1233377477
William Barker
Initial checkin for the SparseRealVectorClass.

I know that it doesn't work 100% with the map*** methods that shouldn't be used with a sparse vector.  I'll clean those up shortly (including uncommenting unit tests).  Just want to get more eyes on this for the methods that matter.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@739504 13f79535-47bb-0310-9956-ffa450edef68

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e9daa97ee5b95002a42caad3dc0d72fea75c8203
1233122462
William Barker
Adding me to the list

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@738375 13f79535-47bb-0310-9956-ffa450edef68

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1233120031
William Barker
Correct bug that prevents replacing an element while using an iterator

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1232911701
Phil Steitz
Changed FractionFormat to extend NumberFormat.  JIRA: MATH-189

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Phil Steitz
Added 1.2 release.

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1232826669
Phil Steitz
Fixed project name.

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Phil Steitz
Replaced maven-generated ant build with standalone version adapted from [io].

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Phil Steitz
Eliminated advertised exceptions that are no longer thrown.

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Luc Maisonobe
various javadoc fixes

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be3dacd09f4fde7fc48fa93337ab458d59cc8982
1232737691
Luc Maisonobe
fixed missing word

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@737152 13f79535-47bb-0310-9956-ffa450edef68

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Luc Maisonobe
fixed missing javadoc parameter

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@737151 13f79535-47bb-0310-9956-ffa450edef68

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ff3bab11deea7386a9ac9e3c4675fcecff53d106
1232737461
Luc Maisonobe
fixed wrong subversion directory

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1232737421
Luc Maisonobe
fixed special xml characters

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e16786f252b63073accfd843c7a93505eea98985
1232710227
Phil Steitz
Changed NaN comparison tests to use TestUtils.assertSame.

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e16786f252b63073accfd843c7a93505eea98985
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e59742b4629a63a798c030db41f6276f716a23e6
1232537436
Phil Steitz
Forced symmetry in binomialCoefficientLog and added test cases for MathUtils.
JIRA: MATH-242
Reported and patched by Christian Semrau

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@736288 13f79535-47bb-0310-9956-ffa450edef68

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85a8ab2dcfc26e83be1514acdb11d3feaac3e73d
1232409122
Phil Steitz
Fixed error in binomial coefficient computation
JIRA: MATH-241
Reported and patched by Christian Semrau

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@735879 13f79535-47bb-0310-9956-ffa450edef68

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1232408414
Luc Maisonobe
added a Legendre-Gauss integrator

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@735876 13f79535-47bb-0310-9956-ffa450edef68

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6378fb99209275e2da4f15664d87bab2aff2e47f
1232400345
Phil Steitz
No code change.  Fixed spelling errors in comments.

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7cd3d822b65b7acdd1f6e1c82b291cd994f4fe05
1232394181
Phil Steitz
Fixed error in factorial accuracy.  JIRA: MATH-240.

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3112f69e1d789e00fb21a1dde901b313547fed60
1232312982
Luc Maisonobe
removed commented out code

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3112f69e1d789e00fb21a1dde901b313547fed60
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315778e8b53471f9ba12e82b8bd6d6eee49f143f
1232312775
Luc Maisonobe
improved consistency between solvers/integrators
by providing the integrand function as a parameter to integrate
rather that at construction, thus allowing reuse of a configured integrator
Jira: MATH-218

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@735545 13f79535-47bb-0310-9956-ffa450edef68

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47dbe73de639fac31d05faa4d11140c51cc3b075
1232311516
Luc Maisonobe
added absolute accuracy handling for integrators

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@735536 13f79535-47bb-0310-9956-ffa450edef68

47dbe73de639fac31d05faa4d11140c51cc3b075
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1232308132
Luc Maisonobe
trying to recover history for solvers

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1232297849
Luc Maisonobe
fixed various minor bugs identified by checkstyle and findbugs

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1232295192
Luc Maisonobe
added missing header

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fa15a15b9e45852dff7ebe2ae490dd78680862d3
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85387dc2d55dbbcc54063ff1ec2ab1f909bef7a4
1232293175
Luc Maisonobe
Added a new minimization package with an implementation of the Brent algorithm
contributed by Gilles Sadowski.
The implementation needs some testing as it seems to never use the parabola fitting
and only relying on golden section. This may be due to the refactoring I did on
the original patch.
Jira: MATH-177

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@735475 13f79535-47bb-0310-9956-ffa450edef68

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1422c5df3ce320396850bcf42e840c8714499804
1232290071
Luc Maisonobe
extracted a superinterface ConvergingAlgorithm from UnivariateRealSolver
for later reuse by upcoming minimization algorithms

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@735468 13f79535-47bb-0310-9956-ffa450edef68

1422c5df3ce320396850bcf42e840c8714499804
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5b6969f0980eb50a2b6aec9f6b193ecc6f5aa7a6
1232284678
Luc Maisonobe
split the analysis package into several sub-packages

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@735452 13f79535-47bb-0310-9956-ffa450edef68

5b6969f0980eb50a2b6aec9f6b193ecc6f5aa7a6
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1d1436557bcb21887d9b352dd0f5f3d3acb71e11
1232284042
Luc Maisonobe
split the analysis package into several sub-packages

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@735449 13f79535-47bb-0310-9956-ffa450edef68

1d1436557bcb21887d9b352dd0f5f3d3acb71e11
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3a8a9685ec252116dce375ae9ca61f4cd41fa70f
1232212090
Phil Steitz
javadoc formatting only.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@735312 13f79535-47bb-0310-9956-ffa450edef68

3a8a9685ec252116dce375ae9ca61f4cd41fa70f
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a96e597894562c2cf01fc678f6c435d65ccc31c5
1232147192
Luc Maisonobe
fixed overflow error in gdc computation
JIRA: MATH-238

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@735178 13f79535-47bb-0310-9956-ffa450edef68

a96e597894562c2cf01fc678f6c435d65ccc31c5
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ee88057ba86b543c4f678f8e28b1620c22b19f0f
1231213589
Phil Steitz
Changed return type of nthRoot to List
Renamed getPhi to getArgument
Changed and documented behavior of nthRoot wrt NaN, infinite components
Improved nth root computation
Added some test cases

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@731822 13f79535-47bb-0310-9956-ffa450edef68

ee88057ba86b543c4f678f8e28b1620c22b19f0f
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9fafb86f4c4d34afd1fdf9df8c8e8b2ccb54f413
1231194772
Luc Maisonobe
removed two false positives from findbugs

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@731749 13f79535-47bb-0310-9956-ffa450edef68

9fafb86f4c4d34afd1fdf9df8c8e8b2ccb54f413
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ea2e132c223b45570d3e99babf69f6b886729e6e
1231193832
Luc Maisonobe
updated findbugs plugin version
fixed exclusion rule for some false positives

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@731746 13f79535-47bb-0310-9956-ffa450edef68

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Phil Steitz
Changed covariance matrix computation to use QR decomp.

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Phil Steitz
Added standard errors.

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Luc Maisonobe
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Luc Maisonobe
removed unused exception clause

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Luc Maisonobe
added missing header

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Luc Maisonobe
removed all external decomposition solvers

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Phil Steitz
Javadoc only.  Cleanup formatting.

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Luc Maisonobe
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Luc Maisonobe
fixed a dimension error with under-determined problems
removed IllegalStateException
create a DenseRealMatrix when solving A.X = B

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Luc Maisonobe
fixed a block width computation error

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Luc Maisonobe
fixed wrong matrix type in test ...
sorry

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Luc Maisonobe
new tests

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Luc Maisonobe
added a missing error message

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Luc Maisonobe
avoid ugly call to getDataRef that relies on vector internal implementation

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Luc Maisonobe
added copySubmatrix methods
use matrix visitors to implement some existing methods more efficiently

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Luc Maisonobe
added default implementations of the matrix visitors interfaces

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Phil Steitz
Added hat matrix computation.

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Phil Steitz
Changed to use updated decomp API.

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Luc Maisonobe
added a static method createBlocksLayout to prepare array before constructing the matrix

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Luc Maisonobe
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Luc Maisonobe
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Luc Maisonobe
added column walking order
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Luc Maisonobe
fixed typos

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Luc Maisonobe
fixed a forgotten scaling factor in inverse Hadamard transform
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note that the integer transform inverse is not always an integer transform

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Luc Maisonobe
replaced TeX formulas by HTML formulas

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b52302121bb18d9804b47722e92e08de31a946ef
1230487768
Luc Maisonobe
Added a RealTransformer interface on top of cosine, sine and Hadamard transforms.
The Fourier transform cannot implement this interface since it produces complex results.
Improved error messages.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@729758 13f79535-47bb-0310-9956-ffa450edef68

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6120284c3713886137a3fc71e27606b8f32c9eb2
1230411312
Luc Maisonobe
Added method to walk matrix entries with or without changing them in the
visitor design pattern sense. Two different orders can be used, row by row
of following internal storage. Internal order should be preferred when no
specific order is needed, because it will be more cache efficient.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@729673 13f79535-47bb-0310-9956-ffa450edef68

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dd7ae1350ef823d8e6d7a0c77f847980fe24ca10
1230409445
Luc Maisonobe
added Fast Hadamard Transform
JIRA: MATH-215

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@729670 13f79535-47bb-0310-9956-ffa450edef68

dd7ae1350ef823d8e6d7a0c77f847980fe24ca10
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8ce4c00c1e3570ddd637b3c0fe8c5190912f999f
1230395023
Luc Maisonobe
added nth root computation for complex numbers
JIRA: MATH-236

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@729639 13f79535-47bb-0310-9956-ffa450edef68

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1230228379
Luc Maisonobe
fixed javadoc comment

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@729431 13f79535-47bb-0310-9956-ffa450edef68

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1230119782
Luc Maisonobe
removed unused method

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@729302 13f79535-47bb-0310-9956-ffa450edef68

72003ba2470a85fed35c104d4cce0adecc5bfc89
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1230119742
Luc Maisonobe
replaced use of deprecated method

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@729301 13f79535-47bb-0310-9956-ffa450edef68

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1230115673
Luc Maisonobe
fixed various errors and warnings detected by checkstyle and findbugs

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c95811b0a49700c8503e9e7dfc5532f728b4344e
1230075033
Luc Maisonobe
added new cache-friendly specializations of get/set/operate/premultiply methods

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@729174 13f79535-47bb-0310-9956-ffa450edef68

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ec4c52a56216055570ae9329f9984378e9d7eef2
1230074872
Luc Maisonobe
added a specialized implementation of premultiply
removed unneeded signatures with RelVectorImpl already handled efficiently by base class

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@729173 13f79535-47bb-0310-9956-ffa450edef68

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95d9854a37e740655c86b673c40a0e326562a438
1230074731
Luc Maisonobe
use direct array access where possible

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@729172 13f79535-47bb-0310-9956-ffa450edef68

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03a1d4d5fc2acd6480aa3d2176832721e2adf37c
1230074611
Luc Maisonobe
fixed javadoc

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@729171 13f79535-47bb-0310-9956-ffa450edef68

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8d4a233f7ec9341cfeb16343cfe2d680247a1f86
1230027473
Luc Maisonobe
added message for asymmetric matrices

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c52275ef9b7dc50d5afda235fc4a835521224c03
1230027431
Luc Maisonobe
removed evenPermutation and isSingular for consistency with other decomposition solvers

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@728917 13f79535-47bb-0310-9956-ffa450edef68

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0e91a5d499edfdc7af34a6b26bd657babf3649a7
1230027289
Luc Maisonobe
javadoc improvements

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@728916 13f79535-47bb-0310-9956-ffa450edef68

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4cce86a7a28b1037dc930d094f86854e56c6b3a7
1230027238
Luc Maisonobe
prepared interface for general eigendecomposition
we currently support only symmetric matrices and real eigenvalues
Jira issue MATH-235 asks for asymmetric matrices support, which needs
an API adaptation.
Preparing the interface yet avoids introducing incompatibility later.
The current status is explained in javadoc and matrix symmetry is checked
at runtime with an InvalidMatrixException triggered if asymmetry is detected.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@728915 13f79535-47bb-0310-9956-ffa450edef68

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Luc Maisonobe
comments

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@728717 13f79535-47bb-0310-9956-ffa450edef68

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Luc Maisonobe
implemented solver as an internal class for efficiency

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@728716 13f79535-47bb-0310-9956-ffa450edef68

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19ceb4431cd859caa6dcd2593ba44af7a63580a2
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Luc Maisonobe
implemented solver as an internal class to avoid building decomposed matrices

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@728686 13f79535-47bb-0310-9956-ffa450edef68

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207b1dc03bdee99538f2bfc86006136293469b60
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Luc Maisonobe
replaced references to RealMatrixImpl

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Luc Maisonobe
removed a leftover print statement

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Luc Maisonobe
fixed loop unrolling error

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Luc Maisonobe
added getSolver() into LUDecomposition

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Luc Maisonobe
removed spurious exception clause

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Luc Maisonobe
fixed some javadoc

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Luc Maisonobe
reverted some changes introduced yesterday, as they lead to unexpected test failures

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Luc Maisonobe
reverted some changes introduced yesterday, as they lead to unexpected test failures

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Luc Maisonobe
decomposed fields can be set to final (this may help optimizer)

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@728483 13f79535-47bb-0310-9956-ffa450edef68

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b551cacc3db5a6d659d9e92911eb602163306deb
1229888159
Luc Maisonobe
recover performances lost with changes for r723496

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Luc Maisonobe
partially unrolled some computation loops to increase performance

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Luc Maisonobe
removed direct references to RealMatrixImpl and use factory

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415479d76a52bb1cdd482894e20d91f629e1df8a
1229731178
Luc Maisonobe
added a new DenseRealMatrix class intended to replace RealMatrixImpl
this class is more cache-friendly as it stores data from squares blocks
in flattened arrays. This allows algorithms that need cross-direction
navigation like multiplication or transpose) to be more efficient on
modern processors.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@728185 13f79535-47bb-0310-9956-ffa450edef68

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Luc Maisonobe
added the addToentry and multiplyEntry methods
to allow in-place operation for matrices

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Luc Maisonobe
removed overhead of Entry object allocation during OpenIntToDoubleHashMap iteration

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82aff3309c4021ada6ef93202a1649afe803dda9
1229267062
Luc Maisonobe
Added support for sparse real matrices
JIRA: MATH-230

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d67bfffac4309c66da129111a258c1471e128c6a
1229266610
Luc Maisonobe
Added an int/double hash map (OpenIntToDoubleHashMap) with much smaller
memory overhead than standard java.util.Map (open addressing and no boxing)

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@726459 13f79535-47bb-0310-9956-ffa450edef68

d67bfffac4309c66da129111a258c1471e128c6a
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8bf7df05e8df6530d6d47c21421ba026d9df0132
1228743642
Luc Maisonobe
removed obsolete comment

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@724343 13f79535-47bb-0310-9956-ffa450edef68

8bf7df05e8df6530d6d47c21421ba026d9df0132
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8f7a24947517068bd76ccefc6f9e878d2f6ecd91
1228684598
Luc Maisonobe
removed characters needing a specific encoding

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@724205 13f79535-47bb-0310-9956-ffa450edef68

8f7a24947517068bd76ccefc6f9e878d2f6ecd91
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e958565b02f003f85f203af89cf466e3358178eb
1228682880
Luc Maisonobe
Added support for multi-dimensional Fourier transform.
JIRA: MATH-152

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@724198 13f79535-47bb-0310-9956-ffa450edef68

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583dffc0ee383e9b5e1e08c574de10db8270fdb7
1228681450
Luc Maisonobe
The root solvers now take the function to solve as a parameter to
the solve methods, thus allowing to reuse the same solver for different
functions.

JIRA:MATH-218

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@724191 13f79535-47bb-0310-9956-ffa450edef68

583dffc0ee383e9b5e1e08c574de10db8270fdb7
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2466ed1d8402459cb2383a6fdb9188fce61320c8
1228681141
Luc Maisonobe
updated error generation

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@724189 13f79535-47bb-0310-9956-ffa450edef68

2466ed1d8402459cb2383a6fdb9188fce61320c8
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b8789b6e0983b49ed173bdabde6e9dcf005ae1b2
1228681065
Luc Maisonobe
fixed missing error checks

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@724187 13f79535-47bb-0310-9956-ffa450edef68

b8789b6e0983b49ed173bdabde6e9dcf005ae1b2
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d3101af1589268c96f806518ec797741700297aa
1228668785
Luc Maisonobe
added setter methods for rows and columns in matrices
JIRA: MATH-234

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@724158 13f79535-47bb-0310-9956-ffa450edef68

d3101af1589268c96f806518ec797741700297aa
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37bdc7e7085803070f7cda6ea19000dc67f34d27
1228664192
Luc Maisonobe
added Frobenius matrix norm
JIRA: MATH-232

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@724144 13f79535-47bb-0310-9956-ffa450edef68

37bdc7e7085803070f7cda6ea19000dc67f34d27
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c28099c6ede92badb1c26c003ea64c5f3f38377e
1228663263
Luc Maisonobe
added an abstract implementation of RealMatrix and used it for RealMatrixImpl
JIRA: MATH-231

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@724141 13f79535-47bb-0310-9956-ffa450edef68

c28099c6ede92badb1c26c003ea64c5f3f38377e
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8dfb5ce14aadc86299f134ee50a652c55738c72a
1228660770
Luc Maisonobe
renamed getValues() into getInternalValues() in ResizeableDoubleArray
(the old name is still there, but deprecated)

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@724136 13f79535-47bb-0310-9956-ffa450edef68

8dfb5ce14aadc86299f134ee50a652c55738c72a
:100644 100644 ad693aa220158d727ba2387872bdb4934e37a000 91fb88898462e97d2bed4f755705b0c304eb9af9 M	src/java/org/apache/commons/math/stat/descriptive/DescriptiveStatistics.java
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160fc1076ae568b4510fec50636fcb23740ee91b
1228586503
Luc Maisonobe
removed unneeded call to super()
removed spurious data copy (a copy was already done in the ResizableDoubleArray)

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@724020 13f79535-47bb-0310-9956-ffa450edef68

160fc1076ae568b4510fec50636fcb23740ee91b
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42009b0b42061253208086136aa4fc017bcc3b46
1228583467
Luc Maisonobe
added support for Zipf distribution
JIRA: MATH-178

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@724014 13f79535-47bb-0310-9956-ffa450edef68

42009b0b42061253208086136aa4fc017bcc3b46
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7790b9f4c744edb67f2e13f451735e3c83af42e3
1228487256
Luc Maisonobe
removed reference to non-existent version 1.3 in changes report

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@723737 13f79535-47bb-0310-9956-ffa450edef68

7790b9f4c744edb67f2e13f451735e3c83af42e3
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17238b2e4570213c4d31d4df6805b24dadc468c1
1228485950
Luc Maisonobe
improved matrix decomposition API.
solving a linear system AX = B is now done by a call like:
  RealVector x = new XyzSolver(new XyzDecomposition(a)).solve(b);

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@723736 13f79535-47bb-0310-9956-ffa450edef68

17238b2e4570213c4d31d4df6805b24dadc468c1
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1e04f22cbe919088d23cb284c6669a8f0dcad601
1228470565
Luc Maisonobe
make sure the abstract copy() method signature used is the restricted one
inherited from the StorelessUnivariateStatistic interface and not the
general one inherited from AbstractUnivariateStatistic.
The eclipse compiler generates an error without this.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@723694 13f79535-47bb-0310-9956-ffa450edef68

1e04f22cbe919088d23cb284c6669a8f0dcad601
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fdb92c5b04d686cec898286ac943e3b48af60235
1228434977
Luc Maisonobe
moved the various solve function out of decomposition algorithms
and into a dedicated DecompositionSolver class

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@723500 13f79535-47bb-0310-9956-ffa450edef68

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1228434498
Luc Maisonobe
moved the various solve function out of decomposition algorithms
and into a dedicated DecompositionSolver class

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5faae53ac0050d4ceb0beec4872efa5dd5ccf09e
1228406031
Luc Maisonobe
removed unused Gershgorin circles class
Gershgorin circles are now handles (simply) inside the EigenDecomposition class

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@723363 13f79535-47bb-0310-9956-ffa450edef68

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7dcff7b38d6d987aef7307bd0ae775224020e251
1228405604
Luc Maisonobe
added (at least!) a first implementation of singular value decomposition.
JIRA: MATH-157, MATH-220, MATH-233

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@723361 13f79535-47bb-0310-9956-ffa450edef68

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e37e28a55d8a65a49213afbb0886468cc5eb5a7d
1228405317
Luc Maisonobe
improved error messages

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@723359 13f79535-47bb-0310-9956-ffa450edef68

e37e28a55d8a65a49213afbb0886468cc5eb5a7d
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6c051d60242db7e59ff82356709937476e1a856b
1228249972
Luc Maisonobe
renamed AbstractMultipleLinearRegressionTest into MultipleLinearRegressionAbstractTest
to match the pom.xml exclude rules and prevent an error in automatic builds

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@722612 13f79535-47bb-0310-9956-ffa450edef68

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0e09cbe2ed12d43286b776df17e635f99f755a87
1228249326
Luc Maisonobe
added a missing deprecated annotation

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@722605 13f79535-47bb-0310-9956-ffa450edef68

0e09cbe2ed12d43286b776df17e635f99f755a87
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559bc9e51d490cb51fa1aa3f2364e9ff07c9524d
1228228907
Luc Maisonobe
don't compute the expensive Q matrix until really needed

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@722476 13f79535-47bb-0310-9956-ffa450edef68

559bc9e51d490cb51fa1aa3f2364e9ff07c9524d
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5979df51f8b7165aebf6f839f683af25e9701656
1228228740
Luc Maisonobe
allow eigen decomposition of a matrix already in symmetric tridiagonal form

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@722473 13f79535-47bb-0310-9956-ffa450edef68

5979df51f8b7165aebf6f839f683af25e9701656
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1228228500
Luc Maisonobe
improved test coverage

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@722471 13f79535-47bb-0310-9956-ffa450edef68

274ead248b0ba564b8eb45c4062fd609975e6e29
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952b612547a5bcd7141820da95d3774b62c73cf5
1228228379
Luc Maisonobe
removed commented out code

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@722469 13f79535-47bb-0310-9956-ffa450edef68

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1b3341ce18fbac5aef67135cad5fa9d384a9190d
1228095296
Phil Steitz
Added rigging for checking eigenvalues and eigenvectors and some easy test cases.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@721943 13f79535-47bb-0310-9956-ffa450edef68

1b3341ce18fbac5aef67135cad5fa9d384a9190d
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eea1a9d95d1e63e5aefd5897e9aeabcb552f1185
1227864338
Luc Maisonobe
fixed wrong loop bounds

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@721399 13f79535-47bb-0310-9956-ffa450edef68

eea1a9d95d1e63e5aefd5897e9aeabcb552f1185
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7d9003b91aacba77f91556a590163824838b8db0
1227801042
Luc Maisonobe
completed implementation of EigenDecompositionImpl.
The implementation is now based on the very fast and accurate dqd/dqds algorithm.
It is faster than Jama for all dimensions and speed gain increases with dimensions.
The gain is about 30% below dimension 100, about 50% around dimension 250 and about
65% for dimensions around 700.
It is also possible to compute only eigenvalues (and hence saving computation of
eigenvectors, thus even increasing the speed gain).
JIRA: MATH-220

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@721203 13f79535-47bb-0310-9956-ffa450edef68

7d9003b91aacba77f91556a590163824838b8db0
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8979969e30f2bb55c0835d40f92c2aafdea26914
1227466070
Phil Steitz
Added support for copying statistics
Changes to stats classes:
- copy constructor
- static copy(-,-)
- instance copy()
Added copy() to UnivariateStatistic and StorelessUnivariateStatistic
interfaces.

JIRA: MATH-212
Reported and patched by Jason C. HandUber 

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@720030 13f79535-47bb-0310-9956-ffa450edef68

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20b4a70d3637a287ec4153d7f7d085cc59fa7a80
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Phil Steitz
Added test case to ensure permuting arrays changes hash.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@719995 13f79535-47bb-0310-9956-ffa450edef68

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Phil Steitz
Added test case to ensure nextPermutation fails for negative arguments.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@719993 13f79535-47bb-0310-9956-ffa450edef68

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Phil Steitz
Clarified javadoc for nextPermutation (to match interface).

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@719991 13f79535-47bb-0310-9956-ffa450edef68

d69852bd95647bd188ff6058b2007e7109e92796
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Phil Steitz
Replace hashcode functions with JDK 1.5+ provided impls. Deprecate?

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@719909 13f79535-47bb-0310-9956-ffa450edef68

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Phil Steitz
Javadoc only.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@719907 13f79535-47bb-0310-9956-ffa450edef68

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Phil Steitz
Added the following methods to ResizableDoubleArray to support MATH-212 
changes to stats classes:
copy constructor
static copy(-,-)
instance copy()
equals and hashcode

JIRA: MATH-212


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@719894 13f79535-47bb-0310-9956-ffa450edef68

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edb9b626313abed465e7151127d56c978da2461e
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Luc Maisonobe
applied Cyril Briquet's patch adding an observations removal feature to descriptive statistics
JIRA: MATH-229

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@713093 13f79535-47bb-0310-9956-ffa450edef68

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Luc Maisonobe
fixed typo

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@713088 13f79535-47bb-0310-9956-ffa450edef68

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Luc Maisonobe
improved error messages

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@712430 13f79535-47bb-0310-9956-ffa450edef68

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aa08f8421622a27ffad8add27ef1deb60518366d
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Luc Maisonobe
allow chained IOExceptions even before Java 6

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@712187 13f79535-47bb-0310-9956-ffa450edef68

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ebac9b0dd11538aaad65fcd88c192d6ff526c662
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Luc Maisonobe
fixed a forgotten possible NPE

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@712178 13f79535-47bb-0310-9956-ffa450edef68

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Luc Maisonobe
improved error messages

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@712144 13f79535-47bb-0310-9956-ffa450edef68

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Luc Maisonobe
leverage null pointer handling,
exception classes can be built using null arguments arrays which
are automatically converted to zero-sized arrays to prevent null pointer exceptions

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@712142 13f79535-47bb-0310-9956-ffa450edef68

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Luc Maisonobe
added factory methods to simplify creation of runtime exceptions with helpful messages

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Luc Maisonobe
removed forgotten pre-JDK 1.4 stuff
added protection against null pointer exceptions

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Luc Maisonobe
added IEEE-754 related useful constants

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Luc Maisonobe
replaced RuntimeException by MathRuntimeException

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Luc Maisonobe
improved error handling in linear package with finer grained exceptions

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Luc Maisonobe
simplified a javadoc sentence

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Luc Maisonobe
remove pre Java 1.4 emulation stuff as we now need at least Java 5

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Luc Maisonobe
Added a scalb method in MathUtils.
This method is similar to the method with same name added in java.lang.Math as of Java 6.

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Luc Maisonobe
fixed checkstyle warnings

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Luc Maisonobe
added missing serialVersionUID

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Luc Maisonobe
replaced calls to deprecated methods from linear algebra package

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Luc Maisonobe
removed unneeded import statements

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Phil Steitz
Fixed error in javadoc.

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Luc Maisonobe
added a first version of eigen decomposition implementation
this version is not finished yet, but it does work when
eigenvalues are well separated and is faster than JAMA for
dimensions above 100.
It still needs work as the MRRR algorithm is not implemented
yet (only the basic parts with twisted factorization is there).
I continue working on this, but wanted to have a first version
committed to let people play with it and as a basis for comparison.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@701897 13f79535-47bb-0310-9956-ffa450edef68

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1223239035
Luc Maisonobe
added methods to operate directly on double arrays

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Luc Maisonobe
removed unneeded multiplications by zero by separating
the first iteration from the following ones in a loop
(once again ...)

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Luc Maisonobe
removed unneeded multiplications by zero by separating
the first iteration from the following ones in a loop

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Luc Maisonobe
replaced an intermediate variable by its opposite for easier to read expression

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Luc Maisonobe
added a test ensuring the part of the symmetric matrix below the diagonal is never used

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Luc Maisonobe
improved javadoc

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Luc Maisonobe
fixed typo

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372619e520ceae34daa37db4b12c65c25debf5e1
1222787357
Luc Maisonobe
added interfaces for eigen decomposition and for singular value decomposition
the implementation for this interfaces is not ready yet, but it seems
important to show what the interface will look like.
JIRA: MATH-220

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@700492 13f79535-47bb-0310-9956-ffa450edef68

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Luc Maisonobe
improved javadoc

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Luc Maisonobe
updated userguide after deprecation of internal LU decomposition in linear algebra

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Luc Maisonobe
added a transformer from symmetric matrix to tri-diagonal matrix
(this is only for internal purposes only yet, it will be used later)

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Luc Maisonobe
fixed indentation (sorry)

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Luc Maisonobe
fixed an matrix mismatch error

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Luc Maisonobe
added a getQT() method to QRDecomposition interface
compute Q by transposing QT rather than the other way round for efficiency
JIRA: MATH-223

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Luc Maisonobe
slight optimization:
cached pointers to row vectors from double arrays
wherever the same row was used in a loop, to avoid
double index computation/range check

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1222617315
Luc Maisonobe
Replaced internal LU-decomposition by the external class.
Deprecated the direct call to these methods as users should
really be able to choose the type of solver they want.
LU-decomposition is only one possibility among others like
QR-decomposition.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@699845 13f79535-47bb-0310-9956-ffa450edef68

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Luc Maisonobe
pulled some solve-related methods higher in the classes hierarchy
(isNonSinglular(), getInverse())

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1222567639
Phil Steitz
Fixed error in javadoc added in r699704
JIRA: MATH-207




git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@699762 13f79535-47bb-0310-9956-ffa450edef68

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1222538719
Phil Steitz
Eliminated the "mutation requirement" in nextGeneration method.
Added algorithm description in javadoc.
JIRA: MATH-207
Reported and patched by David Stefka




git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@699704 13f79535-47bb-0310-9956-ffa450edef68

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1222458673
Luc Maisonobe
propagated trunk changes from r699157 into branch 2.0
MATH-227.  fixed F distribution inverse CDF computation for small denominator degrees of freedom.

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1222398593
Brent Worden
MATH-227.  fixed F distribution inverse CDF computation for small denominator degrees of freedom.

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1221598828
Luc Maisonobe
Fixed an error in CorrelatedRandomVectorGenerator leading to a component of the generated vector being constant
JIRA: MATH-226

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@696054 13f79535-47bb-0310-9956-ffa450edef68

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1221410291
Luc Maisonobe
Greatly improved QR-decomposition speed using transposed matrices internally
JIRA: MATH-223

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1221127031
Luc Maisonobe
Fixed an infinite loop encountered in some backward integration cases for ODE solvers

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1221076508
Luc Maisonobe
added beta distribution
JIRA: MATH-222

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@693959 13f79535-47bb-0310-9956-ffa450edef68

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Luc Maisonobe
distribution factory was removed after 1.2 release

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1221058272
Luc Maisonobe
fixed typo

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1220993941
Luc Maisonobe
added Ted Dunning to the list of contributors (for probability density functions)

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9220f389803c2bdf86e41bebeea1466c8895e88e
1220992628
Luc Maisonobe
Added probability density functions computation for distributions for which it is feasible
JIRA: MATH-222

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Luc Maisonobe
added matrix transformer to bi-diagonal shape
(for later use by singular value decomposition)

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1220269328
Luc Maisonobe
typos

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Luc Maisonobe
removed spurious throws clause

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Luc Maisonobe
added a decompose method to the base DecompositionSolver interface
to allow a solver to decompose a matrix after construction.

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1220026653
Luc Maisonobe
Changed the equals() methods from RealMatrixImpl, RealVectorImpl and Vector3D
so that they consider +0 and -0 are equal, as required by IEEE-754 standard.
These were bugs similar to MATH-221 for Complex.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@690314 13f79535-47bb-0310-9956-ffa450edef68

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1220024782
Luc Maisonobe
Changed the Complex.equals() method so that it considers +0 and -0 are equal,
as required by IEEE-754 standard.
JIRA: MATH-221

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@690308 13f79535-47bb-0310-9956-ffa450edef68

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1219277988
Luc Maisonobe
added JAMA-like LU-decomposition

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Niall Kegan Pemberton
Upgrade to latest clirr plugin version 2.2.2 (fixes problem downloading the old artifact from the repo)

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Niall Kegan Pemberton
Upgrade to latest clirr plugin version 2.2.2 (fixes problem downloading the old artifact from the repo)

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1219182077
Luc Maisonobe
Started work on JAMA-like interfaces.
This first step is an enhancement of the existing QR-decomposition interface and associated implementation in JAMA-style, i.e with added getH() method and most importantly various solve methods for least-squares solution of the A * X = B equation.
JIRA: MATH-220

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@687167 13f79535-47bb-0310-9956-ffa450edef68

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e2774b9140b16b1798fa6b2059786a40393fbbc6
1219144690
Luc Maisonobe
added removeData methods to the SimpleRegression class.
This allows to support regression calculations across a
sliding window of (time-based) observations without having
to recalculate for the entire window every time.
JIRA: MATH-219

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@687021 13f79535-47bb-0310-9956-ffa450edef68

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1218062308
Luc Maisonobe
fixed typo

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1217779968
Luc Maisonobe
added createRealVector for consistency with Matrix factory methods

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@682190 13f79535-47bb-0310-9956-ffa450edef68

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1217188097
Luc Maisonobe
Support for one dimensional vectors has been added to the linear algebra
package with a RealVector interface, a RealVectorImpl default implementation
using a single double array to store elements and a RealVectorFormat class for
input/output.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@680172 13f79535-47bb-0310-9956-ffa450edef68

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a311dce47eb28360297655aefeac518cfac069a9
1217186122
Luc Maisonobe
Support for one dimensional vectors has been added to the linear algebra
package with a RealVector interface, a RealVectorImpl default implementation
using a single double array to store elements and a RealVectorFormat class for
input/output.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@680166 13f79535-47bb-0310-9956-ffa450edef68

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1217185893
Phil Steitz
Javadoc fixes.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@680165 13f79535-47bb-0310-9956-ffa450edef68

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76ab3aae807cc824cf7415f2966a2d99d3f07fe2
1217184758
Phil Steitz
Changed OLSMultipleLinearRegression implementation to use QR decomposition to
solve the normal equations.
JIRA: MATH-217



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1217176123
Luc Maisonobe
updated minimum java version required

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1217171857
Luc Maisonobe
improved explanation of NaN coordinates

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1217171503
Luc Maisonobe
fixed javadoc

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1217169277
Luc Maisonobe
fixed javadoc comments pasted from ComplexFormat without care

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@680113 13f79535-47bb-0310-9956-ffa450edef68

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1217169043
Luc Maisonobe
fixed typo

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@680111 13f79535-47bb-0310-9956-ffa450edef68

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d92c1b36754b7ce22c4cc6f4c78d1af4c64ae21b
1217102429
Luc Maisonobe
reverting a return type changed inadvertently

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@680036 13f79535-47bb-0310-9956-ffa450edef68

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2280928fca9bc42d9c6c0401065c8f759de76c8b
1217101676
Luc Maisonobe
added in user guide a reference to the Vector3DFormat class for input/output.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@680034 13f79535-47bb-0310-9956-ffa450edef68

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1217100935
Luc Maisonobe
filtered out findbugs warnings for intentional and documented features

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1217097101
Luc Maisonobe
added a Vector3DFormat class

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@680029 13f79535-47bb-0310-9956-ffa450edef68

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1217096925
Luc Maisonobe
extracted a CompositeFormat base class from ComplexFormat

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@680026 13f79535-47bb-0310-9956-ffa450edef68

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1216662331
Niall Kegan Pemberton
change commons-parent to version 11

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1216662238
Niall Kegan Pemberton
change commons-parent to version 11

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8968ba2bf3326b4c0f295d2033fba66d000b0099
1216122803
Luc Maisonobe
fixed javadoc related checkstyle errors

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@676891 13f79535-47bb-0310-9956-ffa450edef68

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3dfb882621a212fd602500f966987c0e344c3b4b
1216121686
Luc Maisonobe
removed false comment
(coefficients are not cached, they are computed for each new instance)

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@676882 13f79535-47bb-0310-9956-ffa450edef68

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d7695b8695ee66b3807c13583603b4777e6e6ffc
1216070003
Luc Maisonobe
New ODE integrators have been added: the explicit Adams-Bashforth and implicit
Adams-Moulton multistep methods. These methods support customizable starter
integrators and support discrete events even during the start phase.
All these methods provide the same rich features has the existing ones:
continuous output, step handlers, discrete events, G-stop ...


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@676737 13f79535-47bb-0310-9956-ffa450edef68

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034b1d68bd181fe876ae2106c428a80ee274a59d
1216048571
Luc Maisonobe
preparing test to work with multistep integrators

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@676622 13f79535-47bb-0310-9956-ffa450edef68

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6c1ed573db29625b1f89ffcfe497a17e8e7dda2f
1216048482
Luc Maisonobe
fixed test which did not bounce properly when convergence setting was low

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@676620 13f79535-47bb-0310-9956-ffa450edef68

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8dadbe008fda795fd622128d764b151e82a603f2
1216048356
Luc Maisonobe
fixed a problem preventing integration stop when end time was exactly 0

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@676618 13f79535-47bb-0310-9956-ffa450edef68

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02014066495c944c5d4da6a2c160e79ee5ef66b2
1216048131
Luc Maisonobe
fixed step size handling in borderline cases.
When an even occurred at step start, the step size dropped to zero
which put integration in an infinite loop

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@676615 13f79535-47bb-0310-9956-ffa450edef68

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aedc1272b6012b36267476bfb2a9ae518f64d7b8
1216047537
Luc Maisonobe
FixedStepHandler now extends Serializable.
This should have been done before when the integrator and problem
interfaces were changed too, but was forgotten.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@676612 13f79535-47bb-0310-9956-ffa450edef68

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a94bf27be020fdc006232b51c0b036eb071799a9
1216047093
Luc Maisonobe
improved robustness in case of events just at integration start

When an event occurs exactly at integration start, the first truncated
steps ends up with zero size. This induced problems with forward/backward
sensing based on this step alone. This also induced an infinite loop in
the calling integrators.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@676610 13f79535-47bb-0310-9956-ffa450edef68

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b35f8a1e58611f063e7fac5573050407da9ff98c
1215942901
Luc Maisonobe
fixed a problem introduced by recent changes,
thanks to Phil to spot it

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@676291 13f79535-47bb-0310-9956-ffa450edef68

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8bbdea576022e0374890c6800101fe7c8e8846c5
1215898877
Phil Steitz
Refactored data specification in multiple regression api. JIRA: MATH-255.  Patched by Mauro Televi.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@676241 13f79535-47bb-0310-9956-ffa450edef68

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e7110eac1a03a118b7852659581a7a84b60f31af
1215699733
Luc Maisonobe
Simplified integration end handling using the same method as other integrators
(based on a dedicated event handler)

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@675589 13f79535-47bb-0310-9956-ffa450edef68

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e5f16ff92cba9e441de86d6cbc81cde15c2ddd0f
1215698777
Luc Maisonobe
prevent zero-length steps from generating NaN

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@675578 13f79535-47bb-0310-9956-ffa450edef68

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7385f7694cdf030c01a0f5b969e5bad87a98dcca
1215698701
Luc Maisonobe
updated test after step handling changes

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@675576 13f79535-47bb-0310-9956-ffa450edef68

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5b82c88097248ba7bda933c11b2b40838131e473
1215694194
Luc Maisonobe
allow root search even in reverse direction

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40c365e5cfaf905286ef478ab1362afbf4c8b53b
1215693750
Luc Maisonobe
Replaced size adjustment of all steps of fixed steps Runge-Kutta integrators by a truncation of the last step only.
JIRA: MATH-214

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@675552 13f79535-47bb-0310-9956-ffa450edef68

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0fa1692279761d744d08181ab6eacbf09c348515
1215693644
Luc Maisonobe
Replaced size adjustment of all steps of fixed steps Runge-Kutta integrators by a truncation of the last step only.
JIRA: MATH-214

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@675551 13f79535-47bb-0310-9956-ffa450edef68

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2384ac70e8740ec3c4ec764c5351df751d3f658b
1215524367
Luc Maisonobe
introduced an upper level interface for all ODE integrators

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@674821 13f79535-47bb-0310-9956-ffa450edef68

2384ac70e8740ec3c4ec764c5351df751d3f658b
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c557eb22d4e8b8b99b3b73be7684cf5346f142fa
1215524229
Luc Maisonobe
introduced an upper level interface for all ODE integrators

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@674820 13f79535-47bb-0310-9956-ffa450edef68

c557eb22d4e8b8b99b3b73be7684cf5346f142fa
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6c905a3aea0377431de5e69dbb340635801fc97f
1215523920
Luc Maisonobe
The ODE integrators now support several step handlers at once, instead of just one.
This is more consistent with event handlers management.
The setStepHandler method has therefore been replaced by addStephandler, the
getStepHandler method has been replaced by getStepHandlers which returns a Collection
and a clearStepHandlers method has been added.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@674817 13f79535-47bb-0310-9956-ffa450edef68

6c905a3aea0377431de5e69dbb340635801fc97f
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72e8eb5cb889e7a21d53acd6306c9cd6370a0916
1215523619
Luc Maisonobe
The ODE integrators now support several step handlers at once, instead of just one.
This is more consistent with event handlers management.
The setStepHandler method has therefore been replaced by addStephandler, the
getStepHandler method has been replaced by getStepHandlers which returns a Collection
and a clearStepHandlers method has been added.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@674814 13f79535-47bb-0310-9956-ffa450edef68

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24588ac80204331d1e7f8e21812e09ff7aca7998
1215159926
Luc Maisonobe
fixed javadoc links

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@673953 13f79535-47bb-0310-9956-ffa450edef68

24588ac80204331d1e7f8e21812e09ff7aca7998
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6a6be729d16515d1286e3975dad80df1eb79ed2f
1215113518
Luc Maisonobe
renamed AbstractStepInterpolatorTest into StepInterpolatorAbstractTest
to match existing maven exclusion patterns

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@673772 13f79535-47bb-0310-9956-ffa450edef68

6a6be729d16515d1286e3975dad80df1eb79ed2f
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69b9c638d218796f3f4ea057a32a4556ec0810d4
1215111398
Luc Maisonobe
added a common abstract class for testing time-derivatives consistencies in step interpolators

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@673762 13f79535-47bb-0310-9956-ffa450edef68

69b9c638d218796f3f4ea057a32a4556ec0810d4
:000000 100644 0000000000000000000000000000000000000000 4401d092b16cb0c6797d52311ecca9b1f767c6c0 A	src/test/org/apache/commons/math/ode/nonstiff/AbstractStepInterpolatorTest.java

a717386116e3d69fb9df72e9935b990ea87a0737
1215111116
Luc Maisonobe
All step interpolators for ODE integrators now provide interpolation for
both the state and its time derivatives. The interpolated derivatives are
the exact derivatives of the interpolated state, thus preserving consistency.
The general step handlers hence do not need to call the derivation function
anymore. The fixed step handlers also get the time derivative of the state
as an additional argument along with the state when they are called.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@673759 13f79535-47bb-0310-9956-ffa450edef68

a717386116e3d69fb9df72e9935b990ea87a0737
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97e55988bdb1189df54ad4e32a05c7056bdc126b
1215110163
Luc Maisonobe
pushed common code up in the AbstractIntegrator base class

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@673755 13f79535-47bb-0310-9956-ffa450edef68

97e55988bdb1189df54ad4e32a05c7056bdc126b
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:100644 100644 1b1f353bfce4a697236fdbe8bb82be32432d22ad 4e89bea62fa9494ce89e96be79e2b7fb4affecf5 M	src/java/org/apache/commons/math/ode/nonstiff/RungeKuttaIntegrator.java

23b0de6c94675e57f58f33a58175d89347b04405
1215109772
Luc Maisonobe
added a way to retrieve the meta-data associated with event handlers
(max iteration count, convergence, check interval)

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@673752 13f79535-47bb-0310-9956-ffa450edef68

23b0de6c94675e57f58f33a58175d89347b04405
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a792a2de0f3309571086e0670f69b22a544a5e71
1215109530
Luc Maisonobe
fixed typos

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@673751 13f79535-47bb-0310-9956-ffa450edef68

a792a2de0f3309571086e0670f69b22a544a5e71
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b6a0d050502fc6fe25030446ec6690fe6dca5ab3
1214915780
Luc Maisonobe
added a top-level AbstractIntegrator class to manage events and step handlers

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@673069 13f79535-47bb-0310-9956-ffa450edef68

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7a43f4b5b32279691b28770e6f7648a0712b38d6
1214915658
Luc Maisonobe
added missing keywords

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@673068 13f79535-47bb-0310-9956-ffa450edef68

7a43f4b5b32279691b28770e6f7648a0712b38d6
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:100644 100644 5e60d25ea4052979e710d1c4091303b2285265f4 9447ee23563ba8bc590fbb06484d547e28e6d9aa M	src/test/org/apache/commons/math/MaxIterationsExceededExceptionTest.java

e703a2cb78692922f7c08576bfd1ecdcc0b350a5
1214314708
Luc Maisonobe
Changed return type for FirstOrderIntegrator.integrate() to double
in order to retrieve exact stop time. This allows to handle properly
integration interruption due to an EventHandler instance asking to
stop the integration when its associated event is triggered. The state
was already set to the current state at interruption time, but it was
difficult to get the corresponding time (it involved setting a step
handler monitoring the last step specially).

JIRA: MATH-213


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@671168 13f79535-47bb-0310-9956-ffa450edef68

e703a2cb78692922f7c08576bfd1ecdcc0b350a5
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ed492bd0c5c5c3a0258a65cb31cc8723d8f011fd
1214228806
Luc Maisonobe
ported all changes from trunk between r6152100 (branch 2.0 creation) and r670469 (today)
These changes contain fixes for MATH-204 and MATH-205


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@670569 13f79535-47bb-0310-9956-ffa450edef68

ed492bd0c5c5c3a0258a65cb31cc8723d8f011fd
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:100644 100644 ea1ba6857a5616b4586f0686418f9ca3974822ff 49c93aa0be67aa1904d219ac71be391a1ff8ad16 M	src/test/org/apache/commons/math/analysis/BrentSolverTest.java

7cf0c980d5d814daf187502bc07da0542ed7a828
1214208098
Luc Maisonobe
clarified the ODE package by breaking in into several sub-packages and renaming
classes. This also prepares future work for non-stiff solvers.

SwitchingFunctions is now known as EventHandler
SwitchingFunctionsHandler is now known as CombinedEventsManager

The user manual as also been slightly improved, both to reflect these changes
and to make it easier to grasp the underlying principles in our implementation
of ODE solving


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@670469 13f79535-47bb-0310-9956-ffa450edef68

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f485a1c7ebca34d5f365f870ddf0ff0e683bd769
1213959573
Luc Maisonobe
Changed return type for FirstOrderIntegrator.getSwitchingFunctions()
to a collection of SwitchingFunction instances. This better suits the
intended use of the method and fixes a visibility error since the
previous return type referenced the package private SwitchState class.

JIRA: MATH-210


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@669851 13f79535-47bb-0310-9956-ffa450edef68

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a0f3e0435c405ec842240413e2165863c9c76a16
1213729776
Luc Maisonobe
fixed dimension error in operate method for RealMatrixImpl and BigMatrixImpl
JIRA: MATH-209

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@668798 13f79535-47bb-0310-9956-ffa450edef68

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26cf6d543deeb2e59564ba23568c83eda2b389bd
1213615714
Luc Maisonobe
replaced inefficient constructors Character(char) by Character.valueOf(char)

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@668117 13f79535-47bb-0310-9956-ffa450edef68

26cf6d543deeb2e59564ba23568c83eda2b389bd
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4eca0cc5c19035441975c4acde9bce59336279d1
1213613270
Luc Maisonobe
missing dot at end of javadoc first sentence

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@668107 13f79535-47bb-0310-9956-ffa450edef68

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4b6cf793fe4fc3037897e01da5bfd71e5505530e
1213613204
Luc Maisonobe
The FirstOrderDifferentialEquations and FirstOrderIntegrator interfaces now extends Serializable.
This allows users to embed implementations of these interfaces in their objects when their
objects needs to be serializable.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@668106 13f79535-47bb-0310-9956-ffa450edef68

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311979527c16c996520521965493ed5cb4d7377a
1213612812
Luc Maisonobe
fixed javadoc link

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@668105 13f79535-47bb-0310-9956-ffa450edef68

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aaaa530a35e21f88b6002d66ca67f3e6bc461cdb
1213477171
Phil Steitz
Added another OLS test case.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@667880 13f79535-47bb-0310-9956-ffa450edef68

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e9ee0abc4a4c715f2bd6ae28255760cb44326ea6
1213477123
Phil Steitz
Made assertEquals display difference between arguments.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@667879 13f79535-47bb-0310-9956-ffa450edef68

e9ee0abc4a4c715f2bd6ae28255760cb44326ea6
:100644 100644 181b966f4c1e8804924b7c76c3b7646d7b2231e9 c952774851d0c346c9c6dc01e9c5000255def6d9 M	src/test/R/testFunctions

1ec0634086270d2beac90b963ba4443355561af1
1213471844
Luc Maisonobe
putting the <project> tag on one line as recommended by the commons wiki

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@667869 13f79535-47bb-0310-9956-ffa450edef68

1ec0634086270d2beac90b963ba4443355561af1
:100644 100644 a50780c4d9795617c05c28ce94ecff70713dcf7e 8a7a3b22ef960f805af76b69c5add26d33d69882 M	pom.xml

fd0f87590d1c88c18f669e9b168c8fd20631f23c
1213126372
Luc Maisonobe
replaced inefficient use of constructors for Integer, Long, Float and Double
by the recommended static valueOf methods that cache results

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@666292 13f79535-47bb-0310-9956-ffa450edef68

fd0f87590d1c88c18f669e9b168c8fd20631f23c
:100644 100644 45d3561ec96d053cec67218984be2ee5abf7217e 0d9efed601a719e6c882031c3426c011fbcbc98c M	src/experimental/org/apache/commons/math/function/DefaultContext.java
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:100644 100644 c748bfe25a9c280c89f04f35a7d684d521e91e97 5e60d25ea4052979e710d1c4091303b2285265f4 M	src/test/org/apache/commons/math/MaxIterationsExceededExceptionTest.java
:100644 100644 2260a0906ccda3133e0ca8a0b44c2a8482b94568 3c2ac5e96fb44033281a586f23e96b94a4fb5c8b M	src/test/org/apache/commons/math/complex/ComplexFormatAbstractTest.java
:100644 100644 6844fd9b90258279d67248071e3e508c02972d0a 7eb2bbdecd2b5d2c82be920f8cc943e6cf15d061 M	src/test/org/apache/commons/math/fraction/FractionTest.java
:100644 100644 be201b9679033638c940496fe6dc30ca20f0319a 5ccb4b80d981e7ac98ca767b175b53ad0da15215 M	src/test/org/apache/commons/math/ode/HighamHall54IntegratorTest.java
:100644 100644 ef40af1344a3c68fb2769502a215dacf6b12f36e 03ef1678bf84ba37720fc09f98d8d3d086880ee0 M	src/test/org/apache/commons/math/random/RandomDataTest.java
:100644 100644 7aaca0b4bb89d66c6286f383e139882fa7d6bba3 31c6bbb66aa19fd4becaed234d93645a790a47b0 M	src/test/org/apache/commons/math/stat/FrequencyTest.java
:100644 100644 77af4d7e058926a68b6ea747b2fb88e269ddaa8f 252a95acd7b34e595c887d37a219243a1a9a460d M	src/test/org/apache/commons/math/stat/data/CertifiedDataAbstractTest.java
:100644 100644 c0d9eb03785b1129a0ab5ae42b742006cb08c052 7f1f84678c044d314bfd3c0c6483718e0a682403 M	src/test/org/apache/commons/math/stat/descriptive/ListUnivariateImpl.java
:100644 100644 2a5c93ed076776876c7ea5fd58202c79e845aad5 f9fdf81d9cd91ff4b7d9a7dea2fe1d1089e921e2 M	src/test/org/apache/commons/math/stat/descriptive/ListUnivariateImplTest.java
:100644 100644 210d2a461ae395e9cdec4f8c9a03db80baa083b5 c7f74759fb928725d91d688023f13d5e796d6f4f M	src/test/org/apache/commons/math/stat/descriptive/MixedListUnivariateImplTest.java
:100644 100644 b2b3d5e6e080048c2131d15d0874f9415a2451bc 493a0ea4f74791ece56c5e454f046786e41ed869 M	src/test/org/apache/commons/math/stat/descriptive/MultivariateSummaryStatisticsTest.java
:100644 100644 3b8c99640704588a5e56d9ef0b9708ae1d0c20f8 4261bba80a5989be9eca9cbf95dd03789a0005bd M	src/test/org/apache/commons/math/stat/descriptive/StatisticalSummaryValuesTest.java
:100644 100644 20b72a05941a4bcb550fd425e1614003be1310af 4d11cf45d03da3a7dc10552622408cbb12d3d73b M	src/test/org/apache/commons/math/stat/descriptive/SummaryStatisticsTest.java
:100644 100644 a906975bff7c7cdb265c7d9f615eb73c1657a545 7193946ac1432acb96108cb691b4ccfc9918da36 M	src/test/org/apache/commons/math/util/DefaultTransformerTest.java
:100644 100644 3cef10d9205c6ab8b6f451c9bcc607d8dae9a001 484b57550e27345366cf22bdbc3bc3795e7e5a4d M	src/test/org/apache/commons/math/util/TestBean.java

98a349691da7f332042ec9bafe9973f35baf5f13
1213125684
Luc Maisonobe
fixed a type error in array parameter
(String[] instead of Object[] as in super constructor ... and all other exceptions)
fixed a typo

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@666287 13f79535-47bb-0310-9956-ffa450edef68

98a349691da7f332042ec9bafe9973f35baf5f13
:100644 100644 4233b3c349239ff7fd7c242f3869b98d2ecc07a4 b7bf3f79025c8020bffcb747251394fb8a24c7e2 M	src/java/org/apache/commons/math/ode/DerivativeException.java

e511f759c4b626c4b884500fe4280885dbdaf453
1213021041
Luc Maisonobe
Improved usability of the geometry package.
From a developer point of view, all the changes are related.
From a user point of view, they are independent changes.

 - added several convenience methods for Vector3D and Rotation
 - replaced public no argument constructors with IDENTITY or ZERO
   static instances for immutable classes Vector3D and Rotation
 - fixed inconsistencies in the naming scheme for static fields in
   Vector3D and Rotation with respect to the overall library


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@665700 13f79535-47bb-0310-9956-ffa450edef68

e511f759c4b626c4b884500fe4280885dbdaf453
:100644 100644 118a07dc08edd24738f12df94ac2b550ae5ae897 7f2dba7861add8250bd4df164d9c75e213612204 M	src/java/org/apache/commons/math/geometry/Rotation.java
:100644 100644 34e12a148d53f9100a0674c59769932bb27dfff8 519b42e4069355ba05e3dc995864cff88e454c0b M	src/java/org/apache/commons/math/geometry/RotationOrder.java
:100644 100644 8616bc11d67a760190200cf3337aee27ebb180fe a6d3af4d550b84d54254b21e9ed53ebae612215b M	src/java/org/apache/commons/math/geometry/Vector3D.java
:100644 100644 acd5465eb2ad1e64676a1fc28bf548c7739438eb 2289caa88ae52343e0f8752b32e3e98e517e80c8 M	src/site/xdoc/changes.xml
:100644 100644 3f6c11cd53553a66bc7b2ff97592f0736cc62bdf ca355f4e01be59477bdf4b34083b1c7652170a6c M	src/test/org/apache/commons/math/geometry/RotationTest.java
:100644 100644 8d4430daf46807e252e02720f9cb79b7627344f7 e75397ee16c6ba732033863780affd4432eabf2a M	src/test/org/apache/commons/math/geometry/Vector3DTest.java

ef53729e7cd5004d691f6dc029cdb48216d90413
1212976662
Phil Steitz
Added some initial tests for regression parameters and residuals.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@664602 13f79535-47bb-0310-9956-ffa450edef68

ef53729e7cd5004d691f6dc029cdb48216d90413
:100644 100644 76f4d96d8409bf84e64abb2383c8956c80510393 6f349f2c13384c672bb7bd20ddbef3fec9f30fda M	src/test/org/apache/commons/math/stat/regression/OLSMultipleLinearRegressionTest.java

9bb7dd6e0c7c0ca40cdbeb265272f906275cc534
1212940340
Phil Steitz
Added some initial OLS multiple regression tests.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@664519 13f79535-47bb-0310-9956-ffa450edef68

9bb7dd6e0c7c0ca40cdbeb265272f906275cc534
:000000 100644 0000000000000000000000000000000000000000 832de4eccf665c65f095e5d3e2212cc63f5b16df A	src/test/R/multipleOLSRegressionTestCases
:100644 100644 2ac1f5388e91f26385d8aa3073a6a8416f8a9bcf e7f66bf29bb4f2d58b488faa7092689651ba5a38 M	src/test/R/testAll

ff3dc2bbb200e38f68df0bbc0bebbc06ebc59be1
1212938986
Phil Steitz
Support NaN, na, NULL values in assertEquals.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@664513 13f79535-47bb-0310-9956-ffa450edef68

ff3dc2bbb200e38f68df0bbc0bebbc06ebc59be1
:100644 100644 b18571f4cf66e2345f2bdb833debbdb4b083ff70 181b966f4c1e8804924b7c76c3b7646d7b2231e9 M	src/test/R/testFunctions

2708b20351fb0fbb98fd0bc11d2aab1ecc89ba50
1212436417
Luc Maisonobe
changed fields visibility to protected,
to allow users to extend the implementation

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@662538 13f79535-47bb-0310-9956-ffa450edef68

2708b20351fb0fbb98fd0bc11d2aab1ecc89ba50
:100644 100644 09eaf78b6917c1da6127e3641e8c39e78200bc1d ce92c40b1dae38e0ded1abbe43bc241165671298 M	src/java/org/apache/commons/math/linear/BigMatrixImpl.java
:100644 100644 97599f50917efbe4e46435e5ecfd81c15fbb2501 79106442514c0e1b0496b4067c936039937823ff M	src/java/org/apache/commons/math/linear/RealMatrixImpl.java

6f6ae291d5bd1d130e39f0023d2b1f850e0a5256
1212349216
Luc Maisonobe
avoid array copy

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@662274 13f79535-47bb-0310-9956-ffa450edef68

6f6ae291d5bd1d130e39f0023d2b1f850e0a5256
:100644 100644 8e5fe1ad0abb3b8ad6c19c313d5a3c294cbdf3b3 a0676c7e78744d0fcdb76589a70720c6f75891ed M	src/java/org/apache/commons/math/estimation/AbstractEstimator.java

7b37de8d8ce8145f933537db67070dc91e19d86b
1212337339
Luc Maisonobe
Improved linear RealMatrixImpl and BigMatrixImpl performances.
The main changes are the following ones:
 - use directly the storage array when possible for
   diadic operations (add, subtract, multiply), as
   suggested by Phil, this avoids the cost of the
   generic getEntry method
 - replaced custom indices checks by simple use of
   the JVM checks and ArrayIndexOutOfBoundException
 - put row arrays reference in local variables to
   avoid multiple checks in double loops
 - use final variables where possible
 - removed unneeded array copying
 - added a constructor to build a matrix from an
   array without copying it where it makes sense

The speed gain is about 3X for multiplication. Performances
for this operation are now on par with Jama.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@662241 13f79535-47bb-0310-9956-ffa450edef68

7b37de8d8ce8145f933537db67070dc91e19d86b
:100644 100644 2363c143130463b44d1265658658cf77a7889f33 09eaf78b6917c1da6127e3641e8c39e78200bc1d M	src/java/org/apache/commons/math/linear/BigMatrixImpl.java
:100644 100644 6f08dd0a183ba17702e9fe9a4073e6eb1e927c0c 2f9bf3e3d18150d8f79ded553af2ba3dc52b2278 M	src/java/org/apache/commons/math/linear/MatrixUtils.java
:100644 100644 8c5b96c127de1e0089ed40110654591c37256bc7 97599f50917efbe4e46435e5ecfd81c15fbb2501 M	src/java/org/apache/commons/math/linear/RealMatrixImpl.java
:100644 100644 7b8d6837602b55a3a1d5445d5579a8ae5873ab03 acd5465eb2ad1e64676a1fc28bf548c7739438eb M	src/site/xdoc/changes.xml
:100644 100644 b1b98291423eea91887922fca4f39eea0c8797b3 f30e04b9c3f2513e3b5da840e5be0913d8022ccd M	src/test/org/apache/commons/math/linear/BigMatrixImplTest.java
:100644 100644 90cba3a4b327f22618ac1c715793a8065e0a74ab bc251f41b9689a48af36d83bfdd7d92660fe12c2 M	src/test/org/apache/commons/math/linear/MatrixUtilsTest.java
:100644 100644 c0604c2caa6292a74ad64dc719f78ed21d232770 1147a2a83d7852012311f4d68ee39fdcd64b8bbc M	src/test/org/apache/commons/math/linear/QRDecompositionImplTest.java
:100644 100644 38fafd6b27517768c4d72acad97af2560921b724 7553f3675b991d16c0e0179e07674f4a3e618ed0 M	src/test/org/apache/commons/math/linear/RealMatrixImplTest.java

cc7a071357da904cd6ac16ff50d29e7b2ee2433d
1212000038
Luc Maisonobe
typo

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@661042 13f79535-47bb-0310-9956-ffa450edef68

cc7a071357da904cd6ac16ff50d29e7b2ee2433d
:100644 100644 3739b836530a5beee552c03d0c5b3cf87a15e7dc 9bbc26ce7479b944f24e7b502ef803728f752b19 M	src/java/org/apache/commons/math/analysis/DividedDifferenceInterpolator.java

6656e6da9f8248f7f7b405f73f640debe6f6b771
1211523277
Niall Kegan Pemberton
COMMONSSITE-30 - fix the checkstyle configuration to work for multi-module and review/update <reporting> plugin version numbers for the poms being changed.
 - pom's need to use ${basedir} for configuration files as the multi-module profile is run from commons-parent, so if not specified it can't find those files
 - the checkstyle configuration file needs to use ${checkstyle.header.file} for the headerFile property and  <headerFile> element added to the plugin config in the pom.xml
 - fix m1 checkstyle config to reflect the above where appropriate (specify header file property)


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@659441 13f79535-47bb-0310-9956-ffa450edef68

6656e6da9f8248f7f7b405f73f640debe6f6b771
:100644 100644 4c39a7f944978d5d6cd10efbb4196e2ca336a0d4 db1e638ef927089e528392e200c18ad88570676e M	checkstyle.xml
:100644 100644 fa5f85cbf664d8c3eb916931a1e07074e27ebd35 a50780c4d9795617c05c28ce94ecff70713dcf7e M	pom.xml
:100644 100644 6c00c155b2893ca3d2d61e7175b92b1476c05bc1 772a6a08b7f3a0000607cf8aa2cfe8220f47e15f M	project.properties

a2fb21f1e934ed0cc5593ca26b88a4b280622826
1211523000
Niall Kegan Pemberton
COMMONSSITE-30 - fix the checkstyle configuration to work for multi-module and review/update <reporting> plugin version numbers for the poms being changed.
 - pom's need to use ${basedir} for configuration files as the multi-module profile is run from commons-parent, so if not specified it can't find those files
 - the checkstyle configuration file needs to use ${checkstyle.header.file} for the headerFile property and  <headerFile> element added to the plugin config in the pom.xml
 - fix m1 checkstyle config to reflect the above where appropriate (specify header file property)


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@659438 13f79535-47bb-0310-9956-ffa450edef68

a2fb21f1e934ed0cc5593ca26b88a4b280622826
:100644 100644 e7c7a3387094a61809a6da9b71f5119baa8b386c 3e3d05fe3d0b90d5a43c3c2ad611fbc6afb258d4 M	checkstyle.xml
:100644 100644 aa31ff8ab1fd2d7f6e691307b73e21027344e2d1 f6f35da5cb71b327e9a32165b0edab74d83a5305 M	pom.xml
:100644 100644 cc4f520f48799cd5390b1484e8d5627b5167babb 79ffe9691b725c72641f37e621d4679df4dcb06f M	project.properties

b1e827390dc2d374e49703d3955b4160ceb488fd
1211374695
Luc Maisonobe
Configured checkstyle to stop complaining about incomplete Javadoc in some very specific cases.

This problem has been discussed previously here:
  http://markmail.org/message/pmbiyiqssjesq7tm

The solution implemented with this modification is to configure checkstyle
in such a way the errors can be filtered out using dedicated comments in the
source code:

  // CHECKSTYLE: stop JavadocMethodCheck

  // a bunch of functions known to trigger warnings
  // that we explicitly REFUSE to fix

  // CHECKSTYLE: resume JavadocMethodCheck

The checks are still performed normally in file parts not bracketed by
these comments. Hence the first few methods in o.a.c.m.stat.inference.TestUtils are
still checked for correct javadoc, and only for the last ones in the same files
are the checks relaxed.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@658671 13f79535-47bb-0310-9956-ffa450edef68

b1e827390dc2d374e49703d3955b4160ceb488fd
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c69860b9a17bb5f90d331d381141515999e9324d
1211372007
Luc Maisonobe
added error handling for multiple linear-regression
added documentation for multiple linear-regression
JIRA: MATH-203

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@658645 13f79535-47bb-0310-9956-ffa450edef68

c69860b9a17bb5f90d331d381141515999e9324d
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79a13f97bab612e5f2695da4c70344e169d93c95
1211181221
Luc Maisonobe
changed groupId from commons-math to org.apache.commons
as suggested in http://markmail.org/message/hxdsteovws7lalsa

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@657736 13f79535-47bb-0310-9956-ffa450edef68

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ebedf3011fbe22af05da0229eb9bb23acd0e0848
1211142925
Luc Maisonobe
set up svn:keywords property as the other java files

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@657633 13f79535-47bb-0310-9956-ffa450edef68

ebedf3011fbe22af05da0229eb9bb23acd0e0848
65f63d07d3ad83873527890c1e6ca4cdb9bc396f
1211142083
Luc Maisonobe
fixed many checkstyle errors about javadoc

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@657629 13f79535-47bb-0310-9956-ffa450edef68

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60c93e73be76beece194a332b25e375973408a95
1211139443
Luc Maisonobe
Replaced Raw types by Parameterized types where appropriate.
The various ArrayList, HashSet and HashMap used in math have
be restricted to the content they are intended for.
This removes lots of warnings that have appeared after the
switch to Java 5, and improves safety (for example the categories
used by OneWayAnova are guaranteed to be double arrays at compile
time).
Two difficult cases where not handled here: the Frequency class
and the Fitness interface. The first one mixes types and needs to
be studied before any change is attempted. The second one generates
some side effects on the overall package which is still under development.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@657612 13f79535-47bb-0310-9956-ffa450edef68

60c93e73be76beece194a332b25e375973408a95
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33ca1f2d8d1dbf241ada24c5521700a0e79960ca
1211124000
Luc Maisonobe
fixed javadoc links

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@657572 13f79535-47bb-0310-9956-ffa450edef68

33ca1f2d8d1dbf241ada24c5521700a0e79960ca
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75ba92f2b2fb958ddc04828445fae86039382f38
1211123912
Luc Maisonobe
added missing newline at end of file

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@657571 13f79535-47bb-0310-9956-ffa450edef68

75ba92f2b2fb958ddc04828445fae86039382f38
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99d6a903c741d0893f207b8a7d1ffa447bd9b3ee
1211123129
Luc Maisonobe
added Mauro's patch to support multiple regression
there is still some work to do on this new feature
JIRA: MATH-203

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@657570 13f79535-47bb-0310-9956-ffa450edef68

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7693648a526d64261d524d65e9422289870bc3db
1211122852
Luc Maisonobe
changed minimum java platform version to Java5
this change was discussed in the following thread:
http://markmail.org/message/3v5imgkeh72ypm5v

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@657568 13f79535-47bb-0310-9956-ffa450edef68

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1210881292
Luc Maisonobe
fixed formula in fast cosine transformer javadoc comments
JIRA: MATH-205

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@656814 13f79535-47bb-0310-9956-ffa450edef68

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Niall Kegan Pemberton
Upgrade to commons-parent-10 pom

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Brent Worden
MATH-204.  added root checks for the endpoints.

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Henri Yandell
Fixing the headerFile location as per CODEC-67 and Benjamin's patch

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Phil Steitz
Updated javadoc links.

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Luc Maisonobe
added a way to handle errors in user-defined switching functions
previously, only the function evaluation could trigger errors,
not the other functions of the interface

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Luc Maisonobe
added the getSwitchingFunctions and clearSwitchingfunctions to the integrator interface
JIRA: MATH-202

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@651282 13f79535-47bb-0310-9956-ffa450edef68

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Luc Maisonobe
removed references to discovery

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Luc Maisonobe
announced a whole bunch of deprecation removals

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1209043506
Luc Maisonobe
removed deprecated methods
this does not belong to commons-math yet, but will probably be merged some day

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Luc Maisonobe
removed the deprecated getIdentity method

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Luc Maisonobe
removed deprecated implementations
the implementation is now in the base class, and can be modified by setter injection

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@651254 13f79535-47bb-0310-9956-ffa450edef68

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1209043050
Luc Maisonobe
removed deprecated exceptions constructors

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@651252 13f79535-47bb-0310-9956-ffa450edef68

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Luc Maisonobe
removed factories

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@651251 13f79535-47bb-0310-9956-ffa450edef68

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Luc Maisonobe
removed tests on removed deprecated methods

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@651250 13f79535-47bb-0310-9956-ffa450edef68

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1209041837
Luc Maisonobe
removed deprecated functions that have been moved to the Complex class itself

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@651249 13f79535-47bb-0310-9956-ffa450edef68

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1209040181
Luc Maisonobe
changed the field TOO_SMALL from protected to private static

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/branches/MATH_2_0@651244 13f79535-47bb-0310-9956-ffa450edef68

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1209040034
Luc Maisonobe
changed an internal test class to private static, for the sake of cleanliness

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Luc Maisonobe
removed dependency on discovery

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Luc Maisonobe
removed dependency on discovery

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Luc Maisonobe
removed deprecated factory methods and classes
they were replaced by setter injection as of 1.2

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Luc Maisonobe
replaced deprecated protected real/imaginary fields by private final fields

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Luc Maisonobe
configured pom for development in branch 2.0

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Luc Maisonobe
branching for initial work on 2.0
starting from a copy of trunk, shortly after 1.2 release

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Brent Worden
MATH-201.  Fixed truncation error in t-test classes for large t values.

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Brent Worden
set subversion properties on new files.

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Brent Worden
added beginning of genetics framework.

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1206734814
Luc Maisonobe
fixed crashes in AbstractEstimator when some parameters are bound.
getCovariances() and guessParametersErrors() now only give result
about unbound parameters
JIRA: MATH-200

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Luc Maisonobe
removed warnings

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Luc Maisonobe
added an error message for Levenberg-Marquardt

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Luc Maisonobe
detect numerical problems in Q.R decomposition for Levenberg-Marquardt estimator
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JIRA: MATH-199

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1206274979
Luc Maisonobe
added an error detection for missing imaginary character while parsing complex string
JIRA: MATH-198

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Henri Yandell
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Niall Kegan Pemberton
Upgrade to version 9 of commons-parent

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Brent Worden
MATH-193.  javadoc and style fixes.

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Brent Worden
replace string concatenation with StringBuffer.append calls.

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Luc Maisonobe
fixed javadoc typos

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Niall Kegan Pemberton
Rool Math version number to 1.3-SNAPSHOT following 1.2 release

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Niall Kegan Pemberton
Remove OSGi configuration in maven-jar-plugin (now handled by maven-bundle-plugin configured in commons-parent)

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Niall Kegan Pemberton
Add Issue Tracking and Download pages generated by commons-build-plugin

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Niall Kegan Pemberton
Upgrade to commons-parent-8 and add configuration properties for OSGi (maven-bundle-plugin) and commons-build-plugin

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Phil Steitz
Made builtBy attribute configurable.

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Phil Steitz
Dropped reference to 1.1 release.

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Phil Steitz
Added LICENSE.txt to jar, changed jar name to 1.2.

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Phil Steitz
Dropped extraneous elements causing problems for maven 1.1.

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Phil Steitz
Commented out reference to currently defunct nightlies.

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Phil Steitz
Prepare for 1.2-RC2.

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Phil Steitz
Changed version to RC2, added pointer to build instructions.

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Luc Maisonobe
fixed a javadoc link that used the wrong method name

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Luc Maisonobe
fixed wrong javadoc links

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Luc Maisonobe
minor javadoc changes (ith -> i<sup>th</sup>, removed extra curly brace)

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Luc Maisonobe
removed javadoc links to the addValue method which does not belong to the interface

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Luc Maisonobe
fixed functions names (minimizes -> minimize)

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Luc Maisonobe
improved consistency between Vector3D and RealMatrix API (multiply -> scalarMultiply)
improved javadoc

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Luc Maisonobe
fixed exception messages arguments types

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Luc Maisonobe
improved javadoc (null norm => zero norm)
improved exception consistency
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1203069842
Luc Maisonobe
changed ArrayListe to List
made fields final

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Luc Maisonobe
improved SOC between AbstractEstimator and its derived classes
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1202756419
Luc Maisonobe
fixed typo

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1202724884
Niall Kegan Pemberton
Add license-header.txt to source distro assembly

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Phil Steitz
Reordered javadoc links, prepared for 1.2 release.

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1202705537
Phil Steitz
Preparing for 1.2-RC1.

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4bab561059df57a4bc8e8d4f3475dc6986360146
1202692719
Phil Steitz
Made numerator and denominator final in Fraction and
deprecated protected real and imaginary parts fields in Complex,
making Fraction immutable and preparing Complex to become fully
immutable in 2.0.
JIRA: MATH-188
Reported and patched by Sebastian Bazley


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41014f0439b962a0246920346ca64f38c8714a47
1202692105
Phil Steitz
Added deprecations summary.

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1202691888
Phil Steitz
Fixed AbstractIntegerDistribution cumulativeProbablility(-,-)
to correctly handle double arguments.
JIRA: MATH-184
Reported by Yegor Bryukhov


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1202677830
Phil Steitz
Javadoc. Removed obsolete comment.
JIRA: MATH-187
Reported by Sebastian Bazley


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Phil Steitz
Improved javadoc for implementation setters / getters.

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Phil Steitz
Javadoc only. Added @since tags.

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4f354fa0698a9c196e67e10e079a12d384e90231
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Luc Maisonobe
added a line about multivariate summary statistics.

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Luc Maisonobe
removed references to the StatisticalMultivariateSummaryValues class

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Luc Maisonobe
improved javadoc according to Phil's changes in the implementation class
added the missing getGeometricMean method

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Luc Maisonobe
removed the StatisticalMultivariateSummaryValues class

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Phil Steitz
Fixed typo in header comment.

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Phil Steitz
Edited javadoc.

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ad94f87d49767e481381952243bffbd6e0e346e2
1202600564
Phil Steitz
Added getSumOfLogs method to SummaryStatistics and made
sum of logs instance used by GeometricMean configurable.
JIRA: MATH-191


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Phil Steitz
Cleaned up to prepare for 1.2 release.

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Phil Steitz
Added description for upcoming release, reclassed some changes from update to add.

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Phil Steitz
Dropped references to unreleased RCs.

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Phil Steitz
Updated changes.xml file location.

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Luc Maisonobe
added dimension checks
removed findbugs warnings about internal representation exposition

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Luc Maisonobe
removed remnants of development tests

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1202488954
Luc Maisonobe
added multivariate summary statistics

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Luc Maisonobe
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Luc Maisonobe
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Luc Maisonobe
fixed typo in javadoc

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Luc Maisonobe
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Luc Maisonobe
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Luc Maisonobe
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Luc Maisonobe
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Luc Maisonobe
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Luc Maisonobe
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1202234946
Luc Maisonobe
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1202156948
Luc Maisonobe
fixed svn properties
JIRA: MATH-190

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Luc Maisonobe
fixed javadoc

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Luc Maisonobe
fixed typo

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Sebastian Bazley
Ignore Findbugs preferences file

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1202079337
Luc Maisonobe
really fixed the equals/hashcode issue
JIRA: MATH-186

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53483bccb065d5798528e40915aaa1b833e1a021
1202078918
Phil Steitz
Added OneWayAnova methods to TestUtils and updated User Guide
to cover One-way Anova tests.
JIRA: MATH-173


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53483bccb065d5798528e40915aaa1b833e1a021
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4f57455d53f8f7cb2b25aae014ab73237fbd41a3
1202078633
Luc Maisonobe
changing the order of data to be less sensitive to numerical problems on different JVM
JIRA: MATH-186

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f54e5bbf25bc15054c5625c3aa75f4d0db1802d2
1202074748
Luc Maisonobe
moved synchronized setters/getters from SummaryStatistics to SynchronizedSummaryStatistics
JIRA: MATH-183

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1202067063
Luc Maisonobe
updated junit version

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Luc Maisonobe
removed warnings about unused variables

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Phil Steitz
Updated build instructions.

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1202065134
Luc Maisonobe
added a missing synchronized bloc
JIRA: MATH-183

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Phil Steitz
Javadoc only.  Added missing </p>'s

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d838e256d9e4ad88221b2230612e78165fee5de5
1201976239
Luc Maisonobe
make sure immutable PointCostPair internal representation is not accessible
JIRA: MATH-183

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@617855 13f79535-47bb-0310-9956-ffa450edef68

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1201975670
Luc Maisonobe
changed an internal class to static as suggested by findbugs
JIRA: MATH-183

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fa601ee57b549eabdd099489b7cb09d2af08b5dc
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9283a8ae9db16e08e9447139bc95f7b7aab82a37
1201975289
Luc Maisonobe
throw EOFException when using empty files with ValueServer in replay and digest modes
JIRA: MATH-185

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96ef54d716955b6e8f8e232813a0470d982ad1af
1201970358
Luc Maisonobe
added comments in the code to explain use of real number equality tests
JIRA: MATH-183

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1201918235
Niall Kegan Pemberton
Update m2 build:
 - add findbugs-exclude-filter.xml to source distro
 - exclude Cobertura javascript files with license issues
 - remove NOTICE/LICENSE file resources (already in commons-parent pom)
 - update copyright year in NOTICE file to 2008

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1201883503
Niall Kegan Pemberton
MATH-180 - Add support for OSGi to the m2 build

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Luc Maisonobe
fixed typo

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1201867332
Luc Maisonobe
added checks for integer overflows during double to Fraction conversion
JIRA: MATH-182

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Luc Maisonobe
still javadoc ...

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Luc Maisonobe
announced fix for MATH-181

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1201859002
Luc Maisonobe
fixed javadoc

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afcb345fba17a8ccf58541d3094e130c38fe80ae
1201858754
Luc Maisonobe
replaced maxDenominatorDigit by maxDenominator in constructor
it is more straightforward and avoid an exception
JIRA: MATH-181

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Luc Maisonobe
removing unneeded call to reduce()
(convergents are already reduced by construction)

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1201544353
Luc Maisonobe
fixed an array type error

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49c73ce8e4cbbe2fad5ec4cc4ff49bf60d629d66
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1201521475
Luc Maisonobe
added new constructors for Fractions
JIRA: MATH-181

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1201500603
Phil Steitz
Javadoc only. Added missing </p>'s

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1201407730
Phil Steitz
Removed JDK 1.5-dependent code.
JIRA: MATH-173


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1201387363
Phil Steitz
Added one-way ANOVA implementation.
JIRA: MATH-173
Contributed by Bob MacCallum.


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1201035773
Luc Maisonobe
add change notice
JIRA: MATH-179

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1201035500
Luc Maisonobe
added Niall's patch for improved double constructor test
added test for construction failure (golden-ratio)
JIRA: MATH-179

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Luc Maisonobe
removed duplicated "The"

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Phil Steitz
Fixed section title.

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Luc Maisonobe
added missing javadoc

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b609686dc766987d05c9dbaa760387bdc6227334
1200845210
Luc Maisonobe
fixed array type from String[] to Object[] according to base class

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@613587 13f79535-47bb-0310-9956-ffa450edef68

b609686dc766987d05c9dbaa760387bdc6227334
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e045f37c79b3f77ab0fd04d27dbe41a0add21965
1200844332
Luc Maisonobe
fixed an exception type in javadoc

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@613577 13f79535-47bb-0310-9956-ffa450edef68

e045f37c79b3f77ab0fd04d27dbe41a0add21965
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d76a581764f63cf8841173cf1527216ca19aa558
1200841404
Luc Maisonobe
fixed keywords used in @version tags to match checkstyle-enforced rule

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@613570 13f79535-47bb-0310-9956-ffa450edef68

d76a581764f63cf8841173cf1527216ca19aa558
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718a708ecfd5ac3f2d3091b2ea60e87d0d72f6a4
1200782896
Luc Maisonobe
Added general methods to guess errors on estimated parameters
JIRA: MATH-176

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@613474 13f79535-47bb-0310-9956-ffa450edef68

718a708ecfd5ac3f2d3091b2ea60e87d0d72f6a4
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Luc Maisonobe
fixed javadoc typos

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Luc Maisonobe
removed lazy building of the instance
it was not needed since the instance is small
it introduced synchronization problems

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Rahul Akolkar
Fix global search+replace error.


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"mathuage" eqyivalent of geek-speak for math devs? Sorry but for ASF licensing you have to communicate like the rest of us!

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upgrade to commons-parent-7

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Luc Maisonobe
added an exclusion filter file for findbugs, to prevent false positives from being displayed

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Luc Maisonobe
fixed javadoc typos

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Luc Maisonobe
be more restrictive on ignored exceptions for the test
added a long to double conversion to also test the getN() methods

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Luc Maisonobe
javadoc typo fix

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Luc Maisonobe
removed the static qualifier for inner class NaturalComparator,
the class *really* should be static, but this triggers a bug in the clirr plugin

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Luc Maisonobe
replaced array sharing by array copying to remove a findbugs warning
(this is used only for exception, so there should be no performance problems here)

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Luc Maisonobe
NumberTransformer classes should be Serializable
since they are used as fields of the Serializable TransformerMap class

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d65cde69ff76003ce1ed238b5455cf04cb2af9f3
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Luc Maisonobe
RandomGenerator classes should be Serializable
since they are used as fields of both Serializable RandomAdaptor
and RandomDataImpl classes

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Luc Maisonobe
replaced serialization to temporary file by serialization to byte array
and simplified the error handling to remove a findbugs warning

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Luc Maisonobe
replace getClass by the exact class,
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Luc Maisonobe
UnivariateStatistic classes should be Serializable
since they are used as fields of the Serializable DescriptiveStatistics class

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Luc Maisonobe
the internal class NaturalComparator now implements Serializable
to remove a findbugs warning

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Luc Maisonobe
removed a serialization warning from findbugs

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Luc Maisonobe
commented out currently unused private code to remove warnings

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Luc Maisonobe
added serialVersionUID to remove warning

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Luc Maisonobe
removed warnings about field coming from deprecated base class

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Luc Maisonobe
fixed comments typos

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Luc Maisonobe
replaced calls to deprecated SummaryStatistics.newInstance() method

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Luc Maisonobe
replaced calls to deprecated SummaryStatistics.newInstance() method

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Luc Maisonobe
removed unneeded import clauses

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Luc Maisonobe
replaced calls to deprecated DescriptiveStatistics.newInstance()
and SummaryStatistics.newInstance() methods

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Luc Maisonobe
replaced calls to deprecated DescriptiveStatistics.newInstance() method

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Luc Maisonobe
removed unneeded import clauses

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Luc Maisonobe
replaced calls to deprecated SummaryStatistics.newInstance() method

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Luc Maisonobe
replaced calls to deprecated SummaryStatistics.newInstance() method

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1199972348
Luc Maisonobe
replaced deprecated ComplexUtils methods
JIRA: MATH-171

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Luc Maisonobe
deprecated tests concerning deprecated methods, to remove numerous warnings
JIRA: MATH-171

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1199863813
Luc Maisonobe
MATH-164 add a special handling for multiplication of complex
numbers with infinite parts

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1199855760
Phil Steitz
Added check and rescaling of expected counts to sum to sum of expected
counts if necessary in ChiSquare test.
JIRA: MATH-175
Reported and patched by Carl Anderson.


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fixed typos

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[MATH-171] updated documentation according to new behavior

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fixed typos

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fixed typos

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fixed typos

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Luc Maisonobe
added SynchronizedSummaryStatistics class (and tests)

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Luc Maisonobe
javadoc typos

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Luc Maisonobe
fixed typo in javadoc link

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Phil Steitz
Clean up reflection exception handling.

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1197082793
Phil Steitz
Changed Mean.evaluate() to use a two-pass algorithm, improving accuracy
by exploiting the the fact that this method has access to the full
array of data values.


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Phil Steitz
javadoc

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Phil Steitz
Deprecated abstract factory methods and made SummaryStatistics
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Made implementations of statistics configurable via setters.


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Phil Steitz
Fixed javadoc typo.

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1196627330
Phil Steitz
javadoc only.

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1196627241
Phil Steitz
Changed to extend non-deprecated, now-concrete DescriptiveStatistics.

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Phil Steitz
Added some descriptive statistics verification tests.

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1196543953
Phil Steitz
Cleaned up some errors / omissions from r598133
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* Eliminated unecessary import
* Eliminated lazy initialization
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* Added tests for percentile impl injection 


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Phil Steitz
Deprecated abstract factory methods and made DescriptiveStatistics a concrete
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this class. Made implementations of statistics configurable via setters.


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1196053955
Phil Steitz
updated clirr plugin version.

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Luc Maisonobe
removed an unneeded import clause

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Phil Steitz
Moved misplaced element.

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Phil Steitz
Merged most functions from ComplexUtils into Complex class, added
static factory method to Complex.
JIRA: MATH-171
Reported and patched by Niall Pemberton


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Niall Kegan Pemberton
Update m2 build

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Luc Maisonobe
added missing Apache license

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Luc Maisonobe
typo

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9aeabf6a381ae0f69de6f4d0218f758e54f336fd
1194468773
Luc Maisonobe
renamed the RungeKuttaFehlbergIntegrator base class to EmbeddedRungKuttaIntegrator
since it is more general than the single method designed by Fehlberg
renamed some misleading private fields in the corresponding derived classes

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@592894 13f79535-47bb-0310-9956-ffa450edef68

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Luc Maisonobe
improved test coverage

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@592705 13f79535-47bb-0310-9956-ffa450edef68

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Luc Maisonobe
improved test coverage

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Luc Maisonobe
renamed DescriptiveStatisticsTest into DescriptiveStatisticsAbstractTest
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git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@592121 13f79535-47bb-0310-9956-ffa450edef68

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Luc Maisonobe
improved test coverage

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Luc Maisonobe
add tests for Gauss-Newton estimator

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@591692 13f79535-47bb-0310-9956-ffa450edef68

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1194121419
Luc Maisonobe
allow switching functions to trigger FunctionEvaluationException
let the low level errors in switching functions find their way to upper level

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@591674 13f79535-47bb-0310-9956-ffa450edef68

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1194115637
Luc Maisonobe
improved tests coverage

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@591662 13f79535-47bb-0310-9956-ffa450edef68

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1194115571
Luc Maisonobe
delayed integrator internal state update after the call to step handler
to ensure integrator.getStepStart() and interpolator.getPreviousTime()
are consistent.
renamed getStepsize() into getSignedStepsize()

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@591661 13f79535-47bb-0310-9956-ffa450edef68

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Luc Maisonobe
removed unused FSAL flag for simple Runge-Kutta schemes
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Luc Maisonobe
removed the static suite() method which cannot create a test instance anymore
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Brent Worden
set subversion properties on new files.

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Luc Maisonobe
improved test coverage

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Luc Maisonobe
make sure to use setSafety instead of changing the attribute
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Luc Maisonobe
improved test coverage

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Luc Maisonobe
Replaced the misused clone method in step interpolators
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automatically and hence may trigger DerivativeException.
This should simplify usage and avoid nasty errors caused
by forgotten finalization

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@590660 13f79535-47bb-0310-9956-ffa450edef68

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Brent Worden
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Brent Worden
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Brent Worden
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Brent Worden
MATH-170.  added SynchronizedDescriptiveStatistics class.

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Luc Maisonobe
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Luc Maisonobe
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Luc Maisonobe
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Luc Maisonobe
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Luc Maisonobe
fixed typos

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Luc Maisonobe
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Luc Maisonobe
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Luc Maisonobe
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Luc Maisonobe
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Luc Maisonobe
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1189435183
Luc Maisonobe
replaced arbitrarily small thresholds by 0 where it was sensible with respect to IEEE754
removed unnecessary else clauses
removed double indices where possible
fixed some comments


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Luc Maisonobe
removed an unneeded else

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Luc Maisonobe
improved test coverage

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Luc Maisonobe
removed an unneeded else

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1189409935
Luc Maisonobe
fixed javadoc

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Luc Maisonobe
improved test coverage

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1189373893
Luc Maisonobe
fixed visibility of setMultiStart,
it should be called only from within the minimizes methods

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Luc Maisonobe
fixed javadoc errors introduced with r574049

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1189363598
Luc Maisonobe
[MATH-160] introduced a new UnknownDistributionChisSquareTest interface
to hold the new methods without creating binary incompatibilities with
commons-math 1.1
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Henri Yandell
Changing name to 'Commons Xxx'

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Luc Maisonobe
removed an uneeded throw declaration

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Luc Maisonobe
removed warnings about internal test classes that should have been declared static

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Luc Maisonobe
changed getWindowSized to synchronized since setWindowSize was already synchronized

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Luc Maisonobe
fixed an integer division error (should have been a float division)

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Phil Steitz
Updated commons parent version to 4.

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Luc Maisonobe
removed warnings about unused return values/fields

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1187540102
Luc Maisonobe
fixed a missing initialization

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Luc Maisonobe
added missing Apache header

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Luc Maisonobe
[MATH-165] basic implementation of a SimpleEstimationProblem

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Luc Maisonobe
fixed a warning about a missing serialVersionUID

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Luc Maisonobe
fixed a non-static call to a static method

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Luc Maisonobe
fixed numerous warnings in test code (unused fields/results, fields only set to null)

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Luc Maisonobe
replaced some references to Jakarta after commons switched as TLP

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:100644 100644 83a7d8b9bacc029035e72f59b61fd49ea1990bcf 4e2720ca71a8569d80310ca16564e9730d362e60 M	src/test/R/README.txt
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0e29ee4b25a07f4ed3087eeccc485ecd9448d4cc
1186579126
Luc Maisonobe
fixed a mixed case error (setup vs. setUp) that prevented tests setup
fixed the associated tolerance for some failing tests

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@563850 13f79535-47bb-0310-9956-ffa450edef68

0e29ee4b25a07f4ed3087eeccc485ecd9448d4cc
:100644 100644 90fd5a482c17c850712e9643112c8104d273d8ff 863aedc99f6bece7b74ec8ff64a952c791fd17a9 M	src/test/org/apache/commons/math/distribution/ChiSquareDistributionTest.java
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:100644 100644 4f6884cac086a1bbe3c9cc41f61d5da4d3e02c77 dfbcbf56cbbff678057f4b2c5bbbaac3842a90a3 M	src/test/org/apache/commons/math/distribution/GammaDistributionTest.java
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:100644 100644 39084fc47b075a9fa340571f80254f7ff89c5de8 d29eef96749b0855ed7833f04e6ceea011b0e0e0 M	src/test/org/apache/commons/math/stat/inference/TTestFactoryTest.java

3667e4b4991dcc6d915bedf1fdfb2018df294dc2
1186355310
Phil Steitz
Temporarily disabled clirr compatibility check.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@562983 13f79535-47bb-0310-9956-ffa450edef68

3667e4b4991dcc6d915bedf1fdfb2018df294dc2
:100644 100644 83c6deebaea6a0c0adfde0943680aa52a6e821e0 d7447e7aec6c2e9d7b90ede942d63796ff516643 M	pom.xml

1cc65391ff6fd356f5424961b99568a71f134ad5
1186354803
Phil Steitz
Removed coberta coverage check. Was causing install to fail

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@562981 13f79535-47bb-0310-9956-ffa450edef68

1cc65391ff6fd356f5424961b99568a71f134ad5
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9f754568e23a947aed5c879c06560956a2769aec
1186354355
Phil Steitz
Step coberta back down to 2.0 - was causing build failures.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@562980 13f79535-47bb-0310-9956-ffa450edef68

9f754568e23a947aed5c879c06560956a2769aec
:100644 100644 9abdb34e28e224b2463d60fed74a98f25907f550 ac73c2eeb5f433961d2511a10f13fc037fd9321a M	pom.xml

23e6c25d30c55a1c73dc8a5a793d3d9e118a55ea
1186351176
Brett Porter
don't need to use SSL for a read-only connection


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@562975 13f79535-47bb-0310-9956-ffa450edef68

23e6c25d30c55a1c73dc8a5a793d3d9e118a55ea
:100644 100644 edf28d32d8459fac9cfba7d9523462fe20bd77bb 9abdb34e28e224b2463d60fed74a98f25907f550 M	pom.xml

3cde8bea4c41d22ba50e84e28e7c8b6d6265678a
1186348251
Niall Kegan Pemberton
TLP Move change wiki URLs from "wiki.apache.org/jakarta-commons" to "wiki.apache.org/commons"

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@562963 13f79535-47bb-0310-9956-ffa450edef68

3cde8bea4c41d22ba50e84e28e7c8b6d6265678a
:100644 100644 b2a6a86e0efb19d3b4ea4986d652b03dce016e6f 2ba95fac2c3ae8d99af37caa3df3147bf6af315b M	src/site/site.xml
:100644 100644 0f24905b29c2759ed465bb4b5df0f706c8d1ff90 1c61449c703c6a3044c074dab934d6fa327e08ef M	xdocs/developers.xml
:100644 100644 25216a262ae3feabe9ca4e41274fd1172afe4244 6ec7fd13652d16263611066fd23f31d7191626d8 M	xdocs/navigation.xml

fdd7622fa74ac059c9fd9feec7c0e573ddce38fe
1186343127
Luc Maisonobe
new attempt to fix an encoding error

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@562944 13f79535-47bb-0310-9956-ffa450edef68

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4ced68e8ac5b8b68c1f8eac78b1f59a335041184
1186008994
Niall Kegan Pemberton
Add missing license headers

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4ced68e8ac5b8b68c1f8eac78b1f59a335041184
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ca8706d9f2f2b1d2b148d0aa0c428e8ed58877c4
1185919147
Niall Kegan Pemberton
Correct missing = signs in due-to

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@561566 13f79535-47bb-0310-9956-ffa450edef68

ca8706d9f2f2b1d2b148d0aa0c428e8ed58877c4
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e9918edb46aad273476b73bcbcd48ddbaebe71ab
1185915746
Matthew Jason Benson
Apache Apache

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e39b43efed72d10a7c68a75330e1cab2e2b3a435
1185905605
Niall Kegan Pemberton
Move Commons TLP changes

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@561417 13f79535-47bb-0310-9956-ffa450edef68

e39b43efed72d10a7c68a75330e1cab2e2b3a435
:100644 100644 7966fe996e7cb500146e2829bcaa9cb50df9164a 4ae41fc963b583251c609ae7daf403b4342881e1 M	xdocs/index.xml
:100644 100644 85f93b13b4acee36b6d97ec75e3a75ae0728622a 109646dcc0c382b50800e0891b41c06de481ad7f M	xdocs/issue-tracking.xml
:100644 100644 06b3bd0f685a01c189fa883d11f9347b1ac2c643 25216a262ae3feabe9ca4e41274fd1172afe4244 M	xdocs/navigation.xml

477ae4b5fa019563190d1c11b23e1ac65ebedf44
1185861009
Henri Yandell
Fixing svn locations after TLP move

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@561233 13f79535-47bb-0310-9956-ffa450edef68

477ae4b5fa019563190d1c11b23e1ac65ebedf44
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c501fb2d4c5d59a334ab3d5e19bdc9d7d3cae2cb
1185855429
Rahul Akolkar
TLP related blanket changes:

s:jakarta.apache.org/commons:commons.apache.org:
s/commons-user@jakarta.apache.org/user@commons.apache.org/
s/commons-dev@jakarta.apache.org/dev@commons.apache.org/
s/Jakarta Commons/Apache Commons/
s:svn.apache.org/viewcvs/jakarta/commons:svn.apache.org/viewvc/commons:
s:svn.apache.org/viewcvs.cgi/jakarta/commons:svn.apache.org/viewvc/commons:
s:svn.apache.org/viewvc/jakarta/commons:svn.apache.org/viewvc/commons:
s:svn.apache.org/repos/asf/jakarta/commons:svn.apache.org/repos/asf/commons:

I'd appreciate another pair of eyes on this. There are some categories we probably don't want to change ATM (hopefully, none of these snuck in):
 * Historicals (proposals etc.)
 * URLs that shouldn't change (DOCTYPE fragments etc.)
 * Test cases where namespace URLs matter etc. (I'll track any related nightly failures)


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@561230 13f79535-47bb-0310-9956-ffa450edef68

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220df444872eb275120310453daa5f881713af24
1185767853
Henri Yandell
Moving to a css on the Commons site

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220df444872eb275120310453daa5f881713af24
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d23e587908f7855e5d162bda2f28b5343b9f58a0
1185740062
Henri Yandell
Fixing the mailing list addresses

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d23e587908f7855e5d162bda2f28b5343b9f58a0
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7d4a882dfcfa248e3bdfc95f85d1b05317815e19
1185726173
Luc Maisonobe
changed a character from isolatin-1 to UTF-8 encoding
as specified in the XML header

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@560755 13f79535-47bb-0310-9956-ffa450edef68

7d4a882dfcfa248e3bdfc95f85d1b05317815e19
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c3b43a9cf7e570e5341308266fdcd2c305d54010
1185680554
Henri Yandell
Moving to TLP

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@560660 13f79535-47bb-0310-9956-ffa450edef68

c3b43a9cf7e570e5341308266fdcd2c305d54010
13d155c5c8b61d35119e28b20edf2920f07328a9
1185680441
Henri Yandell
Moving to TLP

git-svn-id: https://svn.apache.org/repos/asf/commons/commons/proper/math/trunk@560657 13f79535-47bb-0310-9956-ffa450edef68

13d155c5c8b61d35119e28b20edf2920f07328a9
908eab2317349c8b53a569248a15dfb84db95115
1185610377
Henri Yandell
Updating to reflect website change

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@560518 13f79535-47bb-0310-9956-ffa450edef68

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03ff69df9b0bd172180e35e2e07a973976c6ee94
1185558724
Niall Kegan Pemberton
Remove jakarta references from m1 and m2 builds

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@560337 13f79535-47bb-0310-9956-ffa450edef68

03ff69df9b0bd172180e35e2e07a973976c6ee94
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:100644 100644 30732b3364ee484c33688ae59cf827810dfda1cd 62fe6bd04976463484dbabd1084105a8a92a9218 M	project.xml

4ce05bcd51ec956d789d20b59c743603d24a8ab7
1185071588
Phil Steitz
Modified NormalDistributionImpl.cumulativeProbablity to catch
MaxIterationsExceededException and return 0 or 1, resp. if the argument
is more than 20 standard deviations from the mean.

JIRA: MATH-167


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@558450 13f79535-47bb-0310-9956-ffa450edef68

4ce05bcd51ec956d789d20b59c743603d24a8ab7
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b8058233e92ad635fe204f450235cad597cd70f2
1184548905
Phil Steitz
Added test to confirm that nextUniform excludes endpoints.

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b8058233e92ad635fe204f450235cad597cd70f2
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85997f7fbb91829fa3c7c51c137f4bd35117f254
1184548812
Phil Steitz
Corrected error in exception text.

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@556484 13f79535-47bb-0310-9956-ffa450edef68

85997f7fbb91829fa3c7c51c137f4bd35117f254
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a14ed1ddb4060424212fecee12e7926332a3be3a
1183825054
Phil Steitz
Added recent contributors - should have been in r554220.

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@554224 13f79535-47bb-0310-9956-ffa450edef68

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bfeade88d27ef890d238abcf5a2defbf233e0c6c
1183822583
Phil Steitz
Added recent contributors.

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bfeade88d27ef890d238abcf5a2defbf233e0c6c
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972a35af7d8f8ff20130095234696f08291ad12a
1183660485
Luc Maisonobe
trivial javadoc fix

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972a35af7d8f8ff20130095234696f08291ad12a
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b0f473cd04ae3fee722f57a7344fb80aeec3bf3a
1183582149
Luc Maisonobe
slightly improved documentation for random vectors generation

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2d12081d150331bf00ac745b9b01e894d0ae4725
1183573587
Rahul Akolkar
Update NOTICE files in trunks-proper in light of TLP move (and add component names to NOTICEs where missing).


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@553294 13f79535-47bb-0310-9956-ffa450edef68

2d12081d150331bf00ac745b9b01e894d0ae4725
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b7ce18afa4bb3bac1687a3a200442d4df10b8159
1182719419
Phil Steitz
Added two-sample (binned comparison) ChiSquare test
JIRA: MATH-160
Thanks to: Matthias Hummel



git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@550285 13f79535-47bb-0310-9956-ffa450edef68

b7ce18afa4bb3bac1687a3a200442d4df10b8159
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2cdf068a537c077dbb795b2c91c6d05b860c5482
1182382790
Phil Steitz
Added log function.
JIRA: MATH-158



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1182378244
Phil Steitz
Increased default epsilon for Gamma, Beta function evaluation.
JIRA: MATH-166
Reported and patched by Lukas Theussl


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Henri Yandell
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1181536976
Phil Steitz
Javadoc only.  Made it clear that increment-getResult uses a different,
less accurate, computing formula than evaluate for Variance.
JIRA: MATH-163


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Brent Worden
Removed dependency on DistributionFactory.

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1181224536
Brent Worden
Removed dependency on DistributionFactory.  Added settable normal distribution field.

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Brent Worden
Removed dependency on DistributionFactory.  Added settable gamma distribution field.

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Brent Worden
Removed dependency on DistributionFactory.  Added settable chi-squared distribution field.

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Brent Worden
Removed dependency on DistributionFactory.  Added settable t distribution field.

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Brent Worden
Removed dependency on DistributionFactory.  Added settable t distribution field.

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Phil Steitz
Added clirr check and report.

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Phil Steitz
Javadoc; changed string double generator to use valueOf.

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Phil Steitz
Added missing license headers.

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Phil Steitz
Added site deployment config.

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Phil Steitz
Initial commit.

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Phil Steitz
Fixed name.

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Phil Steitz
Configured reports.

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Phil Steitz
Added resources for m2 site.

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Phil Steitz
Javadoc formatting and minor edits.

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Phil Steitz
Made license headers conistent.

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26eda01f7ee614985e9bc6c35d0b204f7542bcee
1172685198
Luc Maisonobe
replaced a corrupted non-ASCII character by an entity

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56b8cf436b6577383562dfd2706a831f46bc5712
1172609626
Luc Maisonobe
moved notice information from Mantissa to commons-math
(concerning Levenberg-Marquardt and Gragg-Bulirsch-Stoer algorithms implementations)

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@512386 13f79535-47bb-0310-9956-ffa450edef68

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a833c458eb7cd71998bc664647c3e1a9bde15a21
1172609519
Luc Maisonobe
removed remnants of code transfered from Mantissa to commons-math

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@512385 13f79535-47bb-0310-9956-ffa450edef68

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1075771d110f4d153cc8c1a45ec23530d93e180d
1172609280
Luc Maisonobe
identified myself as a developer

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49caee49ed165a30dc453e478c4056ef2cde7a9f
1172607832
Luc Maisonobe
added the optimization package from Mantissa

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17950753e1bc76c050ee0ab1509fb83dec3096fc
1172607752
Luc Maisonobe
added the geometry package from Mantissa

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@512380 13f79535-47bb-0310-9956-ffa450edef68

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921a27954aca829468930f6ff70419b7a03da8fa
1172531560
Luc Maisonobe
added the ode package from Mantissa

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2a1acbb5c6c293d4d705fa58e59ebd8625cfd074
1172531184
Luc Maisonobe
specialized exception for mismatched vectors or matrices dimensions

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@512064 13f79535-47bb-0310-9956-ffa450edef68

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6d21abba54a9b3a0cca222abfacd26cabd88561c
1172530785
Luc Maisonobe
added the estimation package from Mantissa

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@512061 13f79535-47bb-0310-9956-ffa450edef68

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8ce6b30d7126356da4e18fb73f0bd836b921ce1c
1172529858
Luc Maisonobe
deprecated the no argument constructor

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@512050 13f79535-47bb-0310-9956-ffa450edef68

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d53fbcb626be3bf5f4c2315060e56e91471e6dbc
1172529216
Luc Maisonobe
updated errors prior to Mantissa integration

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@512045 13f79535-47bb-0310-9956-ffa450edef68

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f9304678e3550c5ef6b8077abff7f5606a45a43a
1172529130
Luc Maisonobe
fixed javadoc typos

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@512042 13f79535-47bb-0310-9956-ffa450edef68

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09743354a6cbde7d5c2b927512fa0273e3ead804
1172528573
Luc Maisonobe
added support for generation and analysis of random vectors

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@512039 13f79535-47bb-0310-9956-ffa450edef68

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1172418528
Luc Maisonobe
fixed a wrong unicode encoding

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@511532 13f79535-47bb-0310-9956-ffa450edef68

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1172418487
Luc Maisonobe
make the code java 1.3 compatible

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@511531 13f79535-47bb-0310-9956-ffa450edef68

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1171404390
Luc Maisonobe
allow using locales with different variants

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1171319708
Luc Maisonobe
set eol-style property to native

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1171318647
Luc Maisonobe
set eol-style property to native

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1171310602
Luc Maisonobe
added missing license headers (sorry)

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@506614 13f79535-47bb-0310-9956-ffa450edef68

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93cef035bc8de890039f9df0bd0cdcafa1ed0528
1171309069
Luc Maisonobe
fixed some missing serialVersionUID

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b852a8e794727f4a99a0058dd8830bebd0dcca4a
1171308959
Luc Maisonobe
use properly the top level exceptions for too specific cases which don't need a devoted exception class

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1171308537
Luc Maisonobe
Added and used a specialized exception for arguments outside domains

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@506595 13f79535-47bb-0310-9956-ffa450edef68

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1171308436
Luc Maisonobe
Added and used a specialized exception for duplicate abscissas in sampled functions

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1171308197
Luc Maisonobe
Added and used a specialized exception for continued fraction convergence errors

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1171307861
Luc Maisonobe
Added and used a specialized convergence exception for exceeded iteration counts

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84f1ef1d4578d2a8be6972e7172b308277911faa
1171306464
Luc Maisonobe
- refactored top level of Exception hierarchy,
- added getPatern(), getArguments() and getMessage(Locale)
  (names chosen for consistency with java.text.MessageFormat)
- deprecated some raw constructors as the top level exception are too
  coarse grained and intended only as base classes for easier to use classes
- added several constructors for use by more fine grained derived classes

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@506576 13f79535-47bb-0310-9956-ffa450edef68

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02c96d8aeab2d3246dcf97e33df7df3b95724a88
1170313432
Henri Yandell
Maven 2 pom for Math. Tests that use getClass().getResource(String) don't work at the moment, unsure how to fix currently. 

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@502139 13f79535-47bb-0310-9956-ffa450edef68

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1168894731
Luc Maisonobe
added missing files from previous patches (JIRA:MATH-161 and JIRA:MATH-162)

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@496489 13f79535-47bb-0310-9956-ffa450edef68

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676c203843a2b968236da27702eb8789051a9784
1166566267
Phil Steitz
Updated contributed sources - Mantissa 7 upgrade. JIRA: MATH-162

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@488828 13f79535-47bb-0310-9956-ffa450edef68

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934db34b321f6ab78583d2f6b56eb2dae9a6c2fb
1165961501
Henri Yandell
Setting the maven repo - apologies if this borks anything

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@486363 13f79535-47bb-0310-9956-ffa450edef68

934db34b321f6ab78583d2f6b56eb2dae9a6c2fb
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2798f0ffa570a0218442f483016d08ba12da6574
1164784954
Henri Yandell
Fixed copyright header (committing in parts as the full commit timed out)

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@480443 13f79535-47bb-0310-9956-ffa450edef68

2798f0ffa570a0218442f483016d08ba12da6574
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ed7ae79dd2dae5df1554108f2bc59023cf9b1172
1164784882
Henri Yandell
Fixed copyright header (committing in parts as the full commit timed out)

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@480442 13f79535-47bb-0310-9956-ffa450edef68

ed7ae79dd2dae5df1554108f2bc59023cf9b1172
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05f7f6059bd0cbb69b5dd49c061f1f3520e0ee1e
1164784452
Henri Yandell
Fixed copyright header (committing in parts as the full commit timed out)

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@480440 13f79535-47bb-0310-9956-ffa450edef68

05f7f6059bd0cbb69b5dd49c061f1f3520e0ee1e
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18f8949e2315cda27e421a40fd7bf3a8c01ce9e3
1164784099
Henri Yandell
Fixed copyright header (committing in parts as the full commit timed out)

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@480437 13f79535-47bb-0310-9956-ffa450edef68

18f8949e2315cda27e421a40fd7bf3a8c01ce9e3
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55fd222f5844fb75017c985adec847e933642db8
1164783995
Henri Yandell
Fixed copyright header (committing in parts as the full commit timed out)

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@480435 13f79535-47bb-0310-9956-ffa450edef68

55fd222f5844fb75017c985adec847e933642db8
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53be0bb35a1f831f10bf02ec31f2c3ad8f25053f
1164783206
Henri Yandell
Fixing the license header. Something is up with this file, in svn diff it has a odd set of bytes on the front of the file. Possibly Windows BOM UTF-8 issue?

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@480433 13f79535-47bb-0310-9956-ffa450edef68

53be0bb35a1f831f10bf02ec31f2c3ad8f25053f
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e6191b661d08496d313f1da0e8854df2258b3ceb
1164783098
Henri Yandell
Fixed header. Switched from Windows to Unix line endings as a part of this - not sure if that's problematic or not, but I don't trust that I can hack this to remain windows specific

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@480432 13f79535-47bb-0310-9956-ffa450edef68

e6191b661d08496d313f1da0e8854df2258b3ceb
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3009748f133d47fb5f3b09c4c2cc9dd3ec7c2469
1164473016
Phil Steitz
Formatting only. Eliminated tabs.

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@479144 13f79535-47bb-0310-9956-ffa450edef68

3009748f133d47fb5f3b09c4c2cc9dd3ec7c2469
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:100644 100644 edfe945a8e2e6e314c4fba2d72c0084b7e31564f 623e989768a1dee7ae9fcb62a4e485aa3397ce54 M	src/test/org/apache/commons/math/fraction/FractionFormatTest.java

ca79137f55a7278e761ffc6022c61941e019d01e
1164255433
Phil Steitz
Collection of patches to initial Mantissa sources:
- Fixed a problem when switching functions triggered derivatives
  discontinuities
- Removed methods and classes that were deprecated in Mantissa
  and do not need to be preserved in commons-math as backward compatibility
  is not a problem for this newly integrated code
- Changed Vector3D and Rotation to immutable classes for ease of use
- Improved some javadoc in class Rotation
JIRA: MATH-161
Submitted (with patches) by Luc Maisonobe


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@478458 13f79535-47bb-0310-9956-ffa450edef68

ca79137f55a7278e761ffc6022c61941e019d01e
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89ac173c2b467e6289df0e62f2a43ed1730fbad5
1163972175
Phil Steitz
Initial commit

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@476930 13f79535-47bb-0310-9956-ffa450edef68

89ac173c2b467e6289df0e62f2a43ed1730fbad5
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1163031991
Rahul Akolkar
Point DOAP files to JIRA.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@472714 13f79535-47bb-0310-9956-ffa450edef68

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9b45c75cff86a52785ef34062c85c83f736dce47
1163031284
Rahul Akolkar
Missing SVN properties, possibly some large diffs, no functional change.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@472712 13f79535-47bb-0310-9956-ffa450edef68

9b45c75cff86a52785ef34062c85c83f736dce47
493539adfe0b14c4dcad2421b6429c6651845078
1163029153
Rahul Akolkar
Peg Commons at JCL 1.0.4. Have only looked at proper for lack of cycles, can follow up with sandbox and dormant components as they graduate or get revived.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@472702 13f79535-47bb-0310-9956-ffa450edef68

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1155186733
Henri Yandell
Switching viewcvs url to viewvc

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1155186545
Henri Yandell
Switching viewcvs url to viewvc

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@430245 13f79535-47bb-0310-9956-ffa450edef68

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1154585968
Henri Yandell
Fixing typo as pointed out by Remi Arntzen on commons-dev

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@428255 13f79535-47bb-0310-9956-ffa450edef68

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Phil Steitz
Made constructors public in transform package.

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1153036118
Henri Yandell
Changing cvs.apache.org to people.apache.org. None of these locations appear to point to an svn or cvs url

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1153035931
Henri Yandell
Changing cvs.apache.org to people.apache.org. None of these locations appear to point to an svn or cvs url

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@422396 13f79535-47bb-0310-9956-ffa450edef68

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1152928739
Niall Kegan Pemberton
Changes to Math maven site/build:
- removed dependency on commons-build
- correct Jira --> JIRA
- project specific JIRA links (all open Math issues etc)


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@422131 13f79535-47bb-0310-9956-ffa450edef68

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fc21b26f84312e4f75e8b144238618c73a8b091f
1152162649
Phil Steitz
Modified getSumSquaredErrors method in SimpleRegression to always 
return a non-negative result.
JIRA: MATH-85
Reported by Mark Osborn
Patched by Luc Maisonobe


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@419439 13f79535-47bb-0310-9956-ffa450edef68

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1152161243
Phil Steitz
Fixed bad issue attribute.

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1152047327
Phil Steitz
Javadoc fixes.

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1152046870
Phil Steitz
Improved javadoc for nextAfter.

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@419099 13f79535-47bb-0310-9956-ffa450edef68

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1152046734
Phil Steitz
Added Fast Fourier transform
JIRA: MATH-140
Contributed by Xiaogang Zhang


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@419098 13f79535-47bb-0310-9956-ffa450edef68

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a6ab98b9867145c7d4eccab43c9ab8927aab06a7
1152000565
Phil Steitz
Added a nextAfter method in MathUtils to return the next
machine-representable number in a specified direction from a given
floating point number.  Used this to ensure that MathUtils.round does
not return incorrect results for numbers with bad IEEE754 
representations.
JIRA: MATH-151
Reported by Buza Zoltán
Patch submitted by Luc Maisonobe


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@418934 13f79535-47bb-0310-9956-ffa450edef68

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1151872285
Phil Steitz
Suspended setSecureAlgorithm test, since it takes several minutes on Ubuntu.

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Phil Steitz
Changed issue ids from BZ to Jira.

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41ba9e00e3bbde990f6821f67f0da2a5575b9ac3
1149476812
Phil Steitz
Modified ProperFractionFormat to reject embedded minus signs.
JIRA: MATH-60
Reported by Nhung Nnguyen


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@411647 13f79535-47bb-0310-9956-ffa450edef68

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5de83dca70afabf12bd46bb9ab438753c14c7453
1149476569
Phil Steitz
Eliminated tab character.

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1149470884
Phil Steitz
Added Pascal distribution implementation.
JIRA: MATH-148
Contributed by Joni Salonen


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Phil Steitz
Changed maven changes plugin template to work with Jira.

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Phil Steitz
Changed Bugzilla -> Jira.

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Robert Burrell Donkin
Corrected site host name.

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Henri Yandell
Switched url from bugzilla to jira

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Phil Steitz
Removed jdk 1.4 dependency in FractionFormatTest.

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Phil Steitz
Moved R test sources to src/test.

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1141999230
Phil Steitz
Marked optional dependencies.

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Phil Steitz
Javadoc. Complete change partially included in r385437.

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Phil Steitz
Eliminated main method.

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Phil Steitz
Added comments to dependencies and added xdoc 1.9.2 dependency.

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Phil Steitz
Added Todd Parnell as contributor.

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Phil Steitz
Adding PascalDistributionImpl inadvertently omitted in r381115.  Thanks, Gump!

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Phil Steitz
Added Pascal distribution contributed in BZ #38766.

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1139879714
Niall Kegan Pemberton
Modify maven build to add two non-standard attributes to the jar's manifest file to indicate the values of "maven.compile.source" and "maven.compile.target". Also modify the build to include an "Implementation-Vendor-Id" of "org.apache" in the jar's manifest.

The two non-standard entires created in the manifest file will look something like the following:

X-Compile-Source-JDK: 1.3
X-Compile-Target-JDK: 1.3

This change serves two purposes:

  1) To provide comfort to users regarding JVM compatibility.
  2) Enable releases to be checked more easily for JVM compatibility.

The manifest specification indicates that "unknown" entries in the manifest file are ignored. These entries have been prefixed with "X-" which is a sometimes used "convention" for indicating non-standard entries.

See thread: http://tinyurl.com/839zh

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Henri Yandell
fixing pmc from name to url

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1138032775
Henri Yandell
Adding doap files for each component for the projects.apache.org site

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1136306858
Brent Worden
PR: 38091
ComplexFormat was not formatting double values with the provided NumberFormat.  Instead, the real part format was always used.


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1136181330
Phil Steitz
Simplified code, eliminated unecessary parameters in private methods.

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1136181033
Phil Steitz
Replaced clover with cobertura, added pmd report.

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1136141030
Phil Steitz
Changed wiki link.

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1135723849
Joerg Pietschmann
Fix doc regressions caused by marging back the 1.1 branch.


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1135659935
Phil Steitz
Javadoc.

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1135637637
Phil Steitz
Coding style changes to match the rest of [math].

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1135627254
Phil Steitz
Removed dependency on ordering of roots using TestUtils.assertContains.

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1135627162
Phil Steitz
Added assertContains methods.

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Phil Steitz
Added file build customization properties file.

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1135289642
Phil Steitz
Merged userguide updates from MATH_1_1 release branch.

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Phil Steitz
Merged build fixes from MATH_1_1 release branch.

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Phil Steitz
Merged (final) src changes from MATH_1_1 release branch r321516-358399

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Joerg Pietschmann
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Brent Worden
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Phil Steitz
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Phil Steitz
Added description for 1.1 release.

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Phil Steitz
Formmatting, changed a couple of 'updates' to 'fixes'.

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Phil Steitz
Eliminated JDK 1.4 dependency.

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Phil Steitz
Emasculated MathException secalization test to work under jdk 1.3.

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Phil Steitz
Changed Fraction(double) to correctly handle near-integral arguments.
PR # 35434
Submitted by: Jörg Weimar


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Phil Steitz
Changed lcm to throw ArithmeticException (instead of returning bogus
value) if the result is too large to store as an integer.
PR # 35431
Submitted by: Jörg Weimar


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Javadoc.

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Phil Steitz
Formatting to make checkstyle happy.

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Phil Steitz
Revert inadvertent change from last commit.

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Phil Steitz
Added factory for TTest, ChiSquareTest and TestUtils class with
static methods to create instances and execute tests.
PR #32663



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Phil Steitz
Add 34042 fix.

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Phil Steitz
Eliminated redundant endpoint function evaluations in BrentSolver, SecantSolver. BZ #35042.

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Phil Steitz
Add id for Al.

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Put site (and coming distro) on a diet - limit maven image copy.

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Phil Steitz
Update content.

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Phil Steitz
Formatting, fix errors and typos.

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Phil Steitz
Fix typos.

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Phil Steitz
Update content, fix typos.

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Phil Steitz
Javadoc, formatting.

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Phil Steitz
Added RandomAdaptor to complete PRNG pluggability framework, updated User Guide.

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Phil Steitz
Added [math] prefix to Bugzilla templates.

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Phil Steitz
Added config to support jar deployment.

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Phil Steitz
Added setSubMatrix methods to RealMatrix, BigMatrix.
Modified copyIn methods to use setSubMatrix and moved array argument checking
from constructors and copyIn to setSubMatrix.
PR # 35007
Base implementation contributed by Rodrigo di Lorenzo Lopes


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Brent Worden
added @since tag to new methods.

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@178166 13f79535-47bb-0310-9956-ffa450edef68

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38b48a8c9f4e9368b30c51eaab95f2ffee3f749f
1116790185
Phil Steitz
Minor site updates
* Changed scm link to point to cgi
* Edited down content on main page
* Added direct link to svn on nav
* Changed download link to point directly to math page


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@171363 13f79535-47bb-0310-9956-ffa450edef68

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1116739544
Brent Worden
fixed javadoc comments, added @since tags to new classes and methods, corrected hyperlinks in user guide, add fraction unit tests.

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@171283 13f79535-47bb-0310-9956-ffa450edef68

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674d4c5ae5afe8fecf4069fcdc1067988adee906
1116692959
Phil Steitz
Added createXIdentityMatrix methods to MatrixUtils and deprecated getIdentity
methods in RealMatrixImpl, BigMatrixImpl.
Modified RealMatrixImpl, BigMatrixImpl constructors to throw
IllegalArgumentExceptions instead of ArrayIndexOutOfBounds when dimension
arguments are not positive.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@171229 13f79535-47bb-0310-9956-ffa450edef68

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2cb671bd661fab68c6ce6c2cf36de45a3cf9805d
1116181415
Phil Steitz
Made PRNG pluggable for classes in the random package.  
* Added RandomGeneratorinterface extracted from java.util.random.
* Added and abstract implementation, AbstractRandomGenerator providing default
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* Added a constructor taking a RandomGenerator as an argument to RandomDataImpl
* Changed ValueServer to use a RandomData in its constructor.
* Changes to 1.0 classes should be backward compatible
  (including serialization).


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@170243 13f79535-47bb-0310-9956-ffa450edef68

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984f58332c9929da498b9efe8a972e2071649c16
1116181322
Phil Steitz
Fixed javadoc typo

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@170242 13f79535-47bb-0310-9956-ffa450edef68

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79f07ad259b6affa511e588b216dec3936925c36
1115528157
Phil Steitz
Fixed order of entries, added due-to in last update.

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1115528058
Phil Steitz
Added C. Scott Ananian to contributors.

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20786a617657c0c20315005c621052a2735dfe67
1115183699
Phil Steitz
Ported numerics improvements in commons lang Fraction implementation.
Added utility methods for overflow-checked integer arithmetic and
improved gcd method in MathUtils.


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12643c4a91cd155f1230591936e430064d152903
1115010889
Phil Steitz
Fixed error in TTestImpl.homoscedasticTtest. Implementation was
incorrectly using heteroscedastic t statistic. Also improved sensitivity
of test cases.
BZ #34677
Reported by: Gilles Gaillard


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@165583 13f79535-47bb-0310-9956-ffa450edef68

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bf1152fd53cae540ad17069ca39516a526c69098
1115010104
Phil Steitz
Removed unused import.

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b2ba9651dc4dd89411750872eb2c49e95195be9d
1113714735
Phil Steitz
Updated copyright dates.

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6cb6e91df66f822a8077ef6ed3c88970fd6c893b
1113688185
Phil Steitz
Fixed javadoc errors. One-sided t-test significance adjustment was
reversed in javadoc for boolean-valued test methods.
BZ #34448
Reported by: Gilles Gaillard


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@161613 13f79535-47bb-0310-9956-ffa450edef68

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ad8d86c5470c0daab831a2dc1b8652ad79cb73e0
1113687779
Phil Steitz
Updated to reflect 34448 fix.

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f880bad0259c747139d50761a16d78ef6a69dd53
1112388567
Brent Worden
updating copyright

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f880bad0259c747139d50761a16d78ef6a69dd53
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06117fcdf9c186896a42205ca4e10ec8ad2843e9
1112388321
Brent Worden
PR: 34230
Fixed bug in PolynomialSplineFunction to allow evaluation of the function at the last knot point.

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d1c8fbb244891deb7cf4deb285a4d4729655b0a6
1111985949
Phil Steitz
Changed siteAddress to cvs.apache.org and changed mailing list archive links to match commons site.

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dc7eb2daa10ca3aeed9884a3aba329878b4d0fe5
1111029612
Brent Worden
added weibull distribution

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be419b4e8378754b4e6cab1898ccc7dec3dac50c
1109567562
Phil Steitz
Added subversion links

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8cb39ac93cacc74e1f035cee0647a51e999f967f
1109567523
Phil Steitz
Created separate javadoc links for 1.0 release, 1.1-dev.

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1109425521
Dirk Verbeeck
convert .cvsignore to svn:ignore

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@155505 13f79535-47bb-0310-9956-ffa450edef68

3b9ba210bab427311bfba99da87ccd4d17db73e6
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65b65f88b74de6b3462b04b2cf2a69f064a77557
1109423512
Dirk Verbeeck
svn:keywords correction

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@155427 13f79535-47bb-0310-9956-ffa450edef68

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0f41c723d4cbf02192ce0ed07e8912aec88a0e93
1109279005
Brent Worden
fixed incorrect test data that was causing test failures.

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1109217545
Brent Worden
added cauchy distribution

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1107584660
Brent Worden
added rounding methods.

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41598b038509e9cdb7f6dbeefdb2a2876d2708a6
1107582585
Brent Worden
added fraction class and fraction formatting classes.

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351f0eabe385899e1c15651d24fe914c603a6160
1107205382
Dirk Verbeeck
change http://nagoya.apache.org/bugzilla
to http://issues.apache.org/bugzilla

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@149300 13f79535-47bb-0310-9956-ffa450edef68

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7a47b8d6ca39efd88a377ea213aa0a9966989807
1107126148
Dirk Verbeeck
Use SVN changelog

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94b067575b74d6873dc75f1b760ee4f9930d99bd
1105422082
Brent Worden
Removed references to nagoya.  Replaced with issues and mail-archives


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865f9cbdd813a581ae4d028cecc10d63ceab3bee
1102913605
Phil Steitz
Include LICENSE.txt and NOTICE.txt in jars.


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51b3625a2cb8156c2b298094e97b1602a79a2ba7
1102910837
Phil Steitz
Get NOTICE.txt included in META-INF of distribution jars.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141521 13f79535-47bb-0310-9956-ffa450edef68

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858b0837ba9825cad2817be43a9abda6fa10199e
1102657637
Phil Steitz
Initial commit - R verification tests.


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152880ce8f296e126b439425e349dbc1df1ae646
1102655896
Phil Steitz
Increased precision of target values used in tests.


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be0c69f70755b15f7e7c7a48bd4594cfd3eaf7ad
1102655812
Phil Steitz
Fixed error in comment.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141518 13f79535-47bb-0310-9956-ffa450edef68

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10f16f9ce57806ec24840a7e50e3088f02469899
1102655572
Phil Steitz
Post-1.0 update.


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Prepare for 1.0 release.


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Phil Steitz
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Phil Steitz
Removed JDK 1.4 dependent code.
PR# 32538.


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Phil Steitz
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Partially addresses PR# 32538 (JDK 1.4 dependencies).


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Phil Steitz
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 - Complex equals uses Double.doubletoRawLongBits (fixing would make
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 - Beta fails compilation (easy to fix)


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Phil Steitz
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Phil Steitz
Removed STATUS file obsoleted by project.xml, changes.xml


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Phil Steitz
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Phil Steitz
Updated for 1.0 release.


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Phil Steitz
Updated for 1.0 release.


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Phil Steitz
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Increased accuracy of target values in one test case.


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Phil Steitz
Fixed bug in ChiSquareTest isNonNegative function that was incorrectly
rejecting 2-way tables with zero counts.
Fixes PR #32531
Reported by: Hans van der Heijden


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Phil Steitz
Fixed spelling.


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Phil Steitz
Prepare for Rc2.


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Phil Steitz
Prepare for RC2.


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Phil Steitz
Fixed broken javadoc link.


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Phil Steitz
Removed broken link.


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Phil Steitz
Fixed copyright date.


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Phil Steitz
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Phil Steitz
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PR #31713


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Phil Steitz
Updated to reflect distribution package changes.


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Phil Steitz
Added Fredrik Norin to contributors.


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Phil Steitz
Refactored distribution package so that more general distributions can be
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1) Added Distribution, AbstractDistribution
2) Added IntegerDistribution, AbstractIntegerDistribution
3) Added PoissonDistribution contributed by Fredrik Norin (PR #31688)


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Phil Steitz
Removed unused import.


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Phil Steitz
Removed unused import.


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Phil Steitz
Removed empty loop.


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Phil Steitz
Updated to reflect BigMatrix changes.


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Phil Steitz
Added methods to create BigMatrix instances.


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Phil Steitz
Added checks for validity of arrays supplied to constructors.


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Phil Steitz
Modified tests to work with immutable BigMatrix.


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Phil Steitz
Removed entry mutators, making BigMatrix instances immutable (like RealMatrix).


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Phil Steitz
Added tests for row, column, subMatrix accessors, equals and hashcode, toString.


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1098670880
Phil Steitz
Added Matrix-valued row, column, and subMatrix accessors as suggested
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Implemented equals and hashcode.
Modified toString() to handle empty matrix.


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Phil Steitz
Fixed hashcode computation so elements in first row, col contribute.


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Phil Steitz
Fixed test compile bug introduced in last commit.


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Phil Steitz
Fixed typo.


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Phil Steitz
Pr #31860 fix.


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Phil Steitz
Fixed bugged test (pr #31860), added more R certified tests


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1098599234
Phil Steitz
Fixed error in slope parameter significance estimate
Pr #31860
Reported by: Kim van der Linde


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Phil Steitz
Updated to reflect recent changes.


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Phil Steitz
Changed factorial methods to return 1 for argument = 0.
Pr #31687
Reported by: Fredrik Norin


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Phil Steitz
Initial commit of MatrixUtils, including RealMatrix factory methods.


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Phil Steitz
Removed data mutators from RealMatrix interface and RealMatrixImpl.


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Phil Steitz
Added support for population standard deviation.


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Phil Steitz
Javadoc.


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Phil Steitz
Javadoc.


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Phil Steitz
Improved coverage in population variance test.


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Phil Steitz
Added support for population variance computation.


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1097431276
Phil Steitz
Added test for toString.


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Phil Steitz
Formatting, javadoc, plus fix for toString to handle empty matrix.


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Phil Steitz
Implemented equals and hashCode.


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1097361562
Phil Steitz
Added row and column matrix accessors. Pr #30897.


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1097356902
Phil Steitz
Added Kim van der Linde to contributors, changed version to RC2.


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1097356556
Phil Steitz
Added submatrix accessors.
Pr #30897
Submitted by: Kim van der Linde
Reviewed by: Phil Steitz


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1097217201
Phil Steitz
Set changes.issue.template property.


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1097216718
Phil Steitz
Fix issue attribute name.


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1097216151
Phil Steitz
Updated to reflect recent changes.


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2ea3d91a1965b8ec2adb4ba5c55e22d155931c63
1097215041
Phil Steitz
Add Ken Geis as contributor.


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4f92fd25bd851573559a1d7405c34753bb239748
1097214798
Phil Steitz
Improved performance of logGamma.
Pr #31522
Submitted by: Ken Geis
Reviewd by: Phil Steitz


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0412df24e84e53397b3b5a6516aee1a4e12109c4
1097212101
Phil Steitz
Renamed .univariate -> .descriptive, .multivariate -> .regression


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141454 13f79535-47bb-0310-9956-ffa450edef68

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Phil Steitz
Added ComplexFormat fix.


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1095742268
Brent Worden
Added locale support to complex format.  Added test cases for specific locales.
PR: 31325


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1095741955
Brent Worden
Added locale support to complex format.  Added test cases for specific locales.
PR: 31325


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Phil Steitz
Added test case to ensure Integers passed to addValue as Object references are converted to Longs.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141450 13f79535-47bb-0310-9956-ffa450edef68

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1095735754
Phil Steitz
Modified addValue(Object) to convert Integers to Longs, completing (hopefully ;-) fix of problem with integral type conversions reported to commons-dev by Jon Langlois.


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Phil Steitz
Prepare for 1.0 release.


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Phil Steitz
Prepare for 1.0 release. Turned on changes plugin report.


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Phil Steitz
Initial commit.


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1095634047
Phil Steitz
Fixed error computing cumulative frequencies when actual parameter is an Integer.  Reported to commons-dev list by Jon Langlois.


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Phil Steitz
Fixed "premature" 1.0 download links.


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Phil Steitz
Changed matrix indexing to be 0-based.


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1094087442
Phil Steitz
Added public PGP keys file for signing releases.


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1094073971
Phil Steitz
Made standard matrix entry addressing explicit in javadoc.


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1094055791
Phil Steitz
Javadoc.


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7847852f7ea96bb2293101ac0914a91cebf54cd0
1094055561
Phil Steitz
Modified regression section to reflect class name change.


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af98e93bd2b12bd3a4a5627155b8f626bff962fe
1094054079
Phil Steitz
Made assumption about precomputed mean explicit in javadoc.  Added missing method.


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1094054032
Phil Steitz
Javadoc. Made assumption about precomputed mean explicit.


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1094053899
Phil Steitz
Javadoc. Made assumption about precomputed mean in variance computations explicit.


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1094051972
Phil Steitz
Renamed BivariateRegression to SimpleRegression.


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1093619367
Mark R. Diggory
info on creating patches


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1093138978
Phil Steitz
Fixed javadoc typos.


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1093138890
Phil Steitz
Removed method marked for removal prior to release.


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ea8e7afff1c8c018d2dddbf8e148578f5c7e1ad2
1093138775
Phil Steitz
Added link to Wiki, edited contributing section.


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Mark R. Diggory
Adding postGoal to copy css stylesheets from commons-build when site is generated. Please maintain this modification for consistent look and feel across commons subprojects.


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1092749255
Mark R. Diggory
When content is generated, the stylesheets are copied out of commons-build instead of being linked to, this allows independent stylesheets to be used in distributions. Maintains look and feel when jakarta site is inaccessable.


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Phil Steitz
Added pregoals to copy NOTICE.txt to both distributions and to drop /experimental from source distro.


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Phil Steitz
Added top level link to Javadoc


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1092601413
Phil Steitz
Prepare for RC1.


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60cefe3bc6ce5f3f2f3fb2eb4216aa5544c44138
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Phil Steitz
Suppressed regeneration of build.xml; path bug still present in ant plugin 1.8.


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1092593388
Phil Steitz
Preparing for Release 1.0


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Phil Steitz
Preparing for 1.0 release.


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Phil Steitz
Added missing semicolon in example.


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57ef80caca376d86e8dbf5d0b7124547e141c86e
1092324819
Phil Steitz
Fixed two errors reported on commons-user / commons-dev:
1. addValue(object) and getXxx methods failing or returning incorrect results for Integer arguments when the freq table is not empty
2. getXxx methods failing / returning inconsistent values when invoked on an empty table.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141420 13f79535-47bb-0310-9956-ffa450edef68

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1092071279
Brent Worden
added default goal.


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Phil Steitz
Removed boolean equalVariances flag from t-test API.


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Phil Steitz
Corrected inverseCumulativeProbability(0).


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1090768657
Phil Steitz
Changed Task list label.


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cd321472def83a7e405eeee4bba21274318a818c
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Phil Steitz
Changed statements about references to allow inline definitions, algorithm descriptions.


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Phil Steitz
Removed completed tasks, added Rational/Fraction class task for next release.


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Phil Steitz
Minor edits, formatting.


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Phil Steitz
Changed inverseCumulativeProbability to return correct values for p=0,1 as discussed on commons-dev.


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1090705225
Phil Steitz
Removed basedir property, causes updated plugin to fail.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141411 13f79535-47bb-0310-9956-ffa450edef68

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ccca505ed22099594ee3b3248f377c1caeb20c48
1090701809
Phil Steitz
Changed inverseCumulativeProbability to correctly handle p=0,1 as discussed on commons-dev.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141410 13f79535-47bb-0310-9956-ffa450edef68

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16310dc2210c020955db09bd41e27a2978d20a27
1090560156
Phil Steitz
Changed implementation to return correct inverse probabilities for p=0,1 (per discussion on commons-dev).


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141409 13f79535-47bb-0310-9956-ffa450edef68

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f25e3602099eeb8ccea425f9bb5b841905085436
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Phil Steitz
Changed to allow p=1 as argument to inverseCumulativeProbability.


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1090559683
Phil Steitz
Formatting, minor edits / updates.


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1090463665
Phil Steitz
javadoc


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329c20906cf315d8435a44abab0dd064bb88fbd3
1090463545
Phil Steitz
Add test for getN.


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f76a976abc491d264d605912c2050215a41db744
1090463401
Phil Steitz
Added test for toString().


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141404 13f79535-47bb-0310-9956-ffa450edef68

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1090463361
Phil Steitz
Fixed typo in toString(), added median.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141403 13f79535-47bb-0310-9956-ffa450edef68

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Phil Steitz
Added *last* missing sections :-)


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Phil Steitz
Added test class for PolynomialSplineFunction.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141401 13f79535-47bb-0310-9956-ffa450edef68

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1090328101
Phil Steitz
javadoc.


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Phil Steitz
Javadoc.


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Phil Steitz
Changed some methods to return interface types. Improved javadoc.


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Phil Steitz
Added constructor.


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Phil Steitz
Moved instance field initialization into constructor.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141396 13f79535-47bb-0310-9956-ffa450edef68

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Phil Steitz
Changed wrapped Variance instance to private.


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Phil Steitz
Changed implementation to wrap, rather than extend SumOfLogs.


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Phil Steitz
Removed unused import.


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Phil Steitz
Added geometric mean to StatUtils.


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Phil Steitz
-Changed UnivariateRealFunction.solve() to throw FunctionEvaluationException.
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  IllegalArgumentException if endpoints do not (appear to) bracket a root
  FunctionEvaluationException if an error occurs evaluating the function
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 instead of MathException when input property values are out of range.
-Changed AbstractContinuousDistribution.inverseCumulativeProbability to handle
 corner cases where solution equals domain lower or upper bound.
-Improved javadoc.
-Improved test coverage.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141391 13f79535-47bb-0310-9956-ffa450edef68

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Phil Steitz
Dropped serialization.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141390 13f79535-47bb-0310-9956-ffa450edef68

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Phil Steitz
Added argumentless constructor.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141389 13f79535-47bb-0310-9956-ffa450edef68

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Phil Steitz
Javadoc.


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Phil Steitz
Javadoc.


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dbb024cd5cd1549179222a1e7f1f81ac0480015e
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Phil Steitz
Renamed RealSolverTest to BrentSolverTest.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141386 13f79535-47bb-0310-9956-ffa450edef68

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Phil Steitz
Added FunctionEvaluationException and test class.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141385 13f79535-47bb-0310-9956-ffa450edef68

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ed015661d458a1e098099d5cdf34a1bf46d7d5cd
1089592029
Phil Steitz
Renamed ComplexMath to ComplexUtils.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141384 13f79535-47bb-0310-9956-ffa450edef68

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449fb86fa272ce3b5ddf05c180e0115a6c0da503
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Phil Steitz
Removed redundant null check.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141383 13f79535-47bb-0310-9956-ffa450edef68

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Phil Steitz
Removed [lang] dependency.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141382 13f79535-47bb-0310-9956-ffa450edef68

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Phil Steitz
Eliminated [lang] dependency.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141381 13f79535-47bb-0310-9956-ffa450edef68

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Phil Steitz
Eliminated [lang] dependency and local path reference.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141380 13f79535-47bb-0310-9956-ffa450edef68

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Phil Steitz
Changed to extend RuntimeException, removing [lang] dependency.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141379 13f79535-47bb-0310-9956-ffa450edef68

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Phil Steitz
Added tests for methods computing variance from mean, removed obsolete tests.


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Phil Steitz
Added methods for computing variance using precomputed mean, javadoc.


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Phil Steitz
javadoc only.


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Phil Steitz
Added missing method for computing variance from mean with no subarray specified.


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Phil Steitz
Added methods allowing exact values to be set using string representations.


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Phil Steitz
Added tests for printStackTrace(), serialization.


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Phil Steitz
Eliminated [lang] dependency.


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Phil Steitz
Added test for getN() and evaluate/getResult consistency test for small samples.


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Phil Steitz
Removed tests for factory methods that have been removed.


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Phil Steitz
Added test to make sure NaN is returned when it should be.


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053c5e0d0dd276b5d0ee8d6c958c8fba88576f67
1089479348
Phil Steitz
Changed getN() to return long.


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3771c80880835b4e294a67eab962686d8386dc74
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Phil Steitz
Changed getN() to return long. Changed evalutate() to return NaN if sample size is less than 3 (consistent w/ getResult()).


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Phil Steitz
Eliminated dependency on [logging].


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Phil Steitz
Caught NoClassDefFound Error when DiscoverClass is not present, eliminating
runtime dependency on [discovery], [logging].
Removed factory method taking string class name (use of Class.ForName()).


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Phil Steitz
Catch NoClassDefFound Error when DiscoverClass not present, eliminating runtime dependency on [discovery], [logging]


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Phil Steitz
Add evaluate/increment consistency test.


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Phil Steitz
Added evaluate method taking mean as a parameter. Changed implementation to wrap, rather than extend Variance.


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Phil Steitz
Added evaluate method taking mean as a parameter.


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Phil Steitz
Changed evaluate method to use embedded moments instead of duplicating code.


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Phil Steitz
Added incrementAll(double[]) methods.


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Phil Steitz
javadoc


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Phil Steitz
Made Sum instance local to evaluate. Improved javadoc.


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Phil Steitz
Made fields final.


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Phil Steitz
Removed link to external definition, as formula has been added to javadoc.


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Phil Steitz
Made NaturalComparator member class static.


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Phil Steitz
Added tests for NaN, infinite values, n=0,1.


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Phil Steitz
Fixed, documented NaN handling; changed internal counter to long; replaced pow with *.


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Phil Steitz
Added tests for NaN, infinite values, n=0,1


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Phil Steitz
Fixed, documented NaN handling.


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Phil Steitz
Added small sample tests for 2nd+ order moments.


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Phil Steitz
Added tests for n=0, 1.


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Phil Steitz
Added tests for NaNs, infinite values.


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Phil Steitz
Documented and fixed NaN handling.


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Phil Steitz
javadoc


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Phil Steitz
Changed implementation to use TreeMap directly, eliminating [collections] depenency.


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Phil Steitz
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Phil Steitz
Enforced bounds on quantile, improved javadoc.


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Javadoc.


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Made increment, evaluate consistent wrt NaN, improved javadoc.


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Phil Steitz
Uncommented previously failing tests.


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Made increment and evaluate methods consistent wrt NaN values, improved javadoc, formatting.


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Added tests for special values.


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Phil Steitz
Improved javadoc, implementation.


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Phil Steitz
Added tests for special values.


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Improved efficiency and javadoc.


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Formatting only. Eliminated tabs.


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Phil Steitz
Javadoc.


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Phil Steitz
Added tests to ensure NaN is returned for n<4


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Phil Steitz
Improved javadoc.
Eliminated unecessary / unused data members.
Made increment() and clear() throw IllegalStatException when the
statistic is based on an external moment.
Ensured that Double.NaN is returned for n < 4.


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Phil Steitz
Eliminated no-op increments which will throw once *silent* increment does.


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Phil Steitz
Added serialization tests.


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Phil Steitz
Added missing statistics in toString.


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Phil Steitz
Added tests for serialization, equals and hashcode.


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Phil Steitz
Implemented equals and hashcode, making summaries with identical statistics equal.


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Phil Steitz
Added tests for equals and hashcode.


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Phil Steitz
Implemented equals and hashcode.


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Phil Steitz
Added method to verify that serialization / deserialization preserves equals and hashCode (when this is supported).


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Phil Steitz
Changed getUnivariateStatistic() implementation to return a new instance (so tests can use multiple instances).


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Added equals and hash methods for comparing / hashing double values.


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Phil Steitz
Changed test class names to match implementation classes.


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Phil Steitz
Javadoc.


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Phil Steitz
Javadoc, formatting.


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Phil Steitz
Dropped load method taking string file path as argument.


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Phil Steitz
Dropped (unimplemented) load / saveDistribution methods.


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Phil Steitz
Dropped load / save methods taking string file paths as arguments.


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Phil Steitz
Formatting only. Removed tabs.


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Phil Steitz
Formatting only. Removed tabs and trailing spaces.


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Phil Steitz
Combined Expandable, ContractableDoubleArrays into ResizableDoubleArray and dropped FixedDoubleArray.


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Brent Worden
removed some condition logic by changing the continued fraction representation.


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08aeba4f0355ae6806f71bb92e9f81004cdbe6fe
1086892067
Brent Worden
PR: 29414
I changed the continued fraction used in regularizedBeta resulting in faster 
convergence.  I added the test case provided by scott and ran all units tests 
with all of them passing.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141289 13f79535-47bb-0310-9956-ffa450edef68

08aeba4f0355ae6806f71bb92e9f81004cdbe6fe
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43dcbb2433f06e0a1263d37a91f08c02561a99dc
1086704380
Phil Steitz
Javadoc only.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141288 13f79535-47bb-0310-9956-ffa450edef68

43dcbb2433f06e0a1263d37a91f08c02561a99dc
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f34385f6186718e8461f4f3a7a91ff8603071cf3
1086673063
Phil Steitz
Removed BeanUtils from list of dependencies.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141287 13f79535-47bb-0310-9956-ffa450edef68

f34385f6186718e8461f4f3a7a91ff8603071cf3
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a25f1e4515b215f4510088cd1787725479390b14
1086640216
Brent Worden
PR: 29419
Added an implementation of regularized gamma function, Q(a, x) = 1 - P(a,x), based on a continued fraction.  This converges much faster for the large x case.  I added the example submitted by Scott as a test case and ran all the test cases with everything passing.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141286 13f79535-47bb-0310-9956-ffa450edef68

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adc70eb37887e7036fd8395f489c26175546af45
1086578791
Phil Steitz
Formatting only, Eliminated tabs and trailing spaces.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141285 13f79535-47bb-0310-9956-ffa450edef68

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6d67900fb9862d1f33608f9985068d0eaeaef15d
1086563649
Phil Steitz
Cached DistributionFactory instance.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141284 13f79535-47bb-0310-9956-ffa450edef68

6d67900fb9862d1f33608f9985068d0eaeaef15d
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9c25e76e251bd7d5a8597c841005b4c72e9fc385
1086560905
Phil Steitz
Cached DistributionFactory instance used to create TDistribution instances.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141283 13f79535-47bb-0310-9956-ffa450edef68

9c25e76e251bd7d5a8597c841005b4c72e9fc385
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165783a737a69801fd245ff8555f909fc960f673
1086539946
Phil Steitz
Modified to extend ContinuousDistributionAbstractTest.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141282 13f79535-47bb-0310-9956-ffa450edef68

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1e1006a4d0e6ff24c91ed8acc442f99ea28e5e38
1086539885
Phil Steitz
Modified to extend AbstractContinuousDistribution.
Changed to throw IllegalArgumentException instead of returning NaN for
inverseCumulativeProbability argument not in [0,1].


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141281 13f79535-47bb-0310-9956-ffa450edef68

1e1006a4d0e6ff24c91ed8acc442f99ea28e5e38
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72d63d7ea2ee079eba6d5520ddcd7ac2d92d054d
1086538132
Phil Steitz
Corrected copyright date.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141280 13f79535-47bb-0310-9956-ffa450edef68

72d63d7ea2ee079eba6d5520ddcd7ac2d92d054d
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bee3b2bf43e36a9b07296b02b045842f43b8ff4a
1086495645
Phil Steitz
Initial Commit of BigMatrix classes.
PR #28819
Submitted by Matthew Inger


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141279 13f79535-47bb-0310-9956-ffa450edef68

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d96ef142ea5815d99f8f732966f570fb88a154bf
1086474676
Phil Steitz
Converted tabs to spaces.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141278 13f79535-47bb-0310-9956-ffa450edef68

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53b67deb0fe6aa6d275d6cd05fffda942fd8b69a
1086474490
Phil Steitz
Dropped rank method.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141277 13f79535-47bb-0310-9956-ffa450edef68

53b67deb0fe6aa6d275d6cd05fffda942fd8b69a
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c4510caf977e874dc5d462558e0eb5e948955eac
1086466266
Phil Steitz
Dropped serialization.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141276 13f79535-47bb-0310-9956-ffa450edef68

c4510caf977e874dc5d462558e0eb5e948955eac
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562545da7ffacdefe4a252ea1d9a57efb63c61aa
1086463723
Phil Steitz
Updated t-test docs to include paired, homoscedastic tests.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141275 13f79535-47bb-0310-9956-ffa450edef68

562545da7ffacdefe4a252ea1d9a57efb63c61aa
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04aa59dae1db76fdaa26fc85a2e7c744a7131864
1086357243
Mark R. Diggory
Removed unused imports


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141274 13f79535-47bb-0310-9956-ffa450edef68

04aa59dae1db76fdaa26fc85a2e7c744a7131864
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dc3d1506f8b49d341a3954cc5aad6fd23dbd6b93
1086357192
Mark R. Diggory
This call to StringUtils did very little for the following conditional structure. Consolidated code and removed dependency on lang.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141273 13f79535-47bb-0310-9956-ffa450edef68

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8a9722dad6954246a5b7efa45b934fabee17bb5f
1086187623
Mark R. Diggory
My local settings forced downloads in Ant to Apache instead of Ibiblio. I've corrected this.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141272 13f79535-47bb-0310-9956-ffa450edef68

8a9722dad6954246a5b7efa45b934fabee17bb5f
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455f95bcf76059c4c31e28d2928a9315b4108534
1086181735
Phil Steitz
Added support for equal variances tests.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141271 13f79535-47bb-0310-9956-ffa450edef68

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94d130188d16bd3a1ca2560bd372bdcf48999172
1086135892
Mark R. Diggory
Adding serialversionUID to control versioning and allow for implementations that would like to maintain serialization.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141270 13f79535-47bb-0310-9956-ffa450edef68

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1a46b43aed7d8ee2541e294ed6c11c178de3241e
1086135316
Mark R. Diggory
Adding serialversionUID to control versioning and allow for implementations that would like to maintain serialization.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141269 13f79535-47bb-0310-9956-ffa450edef68

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71c867a4af6deab5dc7cd6373461b13cad409883
1086135255
Mark R. Diggory
This class doesn't benefit from serialization, it has no internal state.


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9095d345ef747c4e11c10d90a8a9b0dc14d04d8c
1086135121
Mark R. Diggory
Test Example for serialization of Solvers and Functions.


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1086134131
Mark R. Diggory
Removed Dependency on BeanUtils and regenereated build.xml to reflect changes.


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1086133996
Mark R. Diggory
These Bean Classes have been added to experimental as internal classes in BeanListUnivariateImplTest


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6b35f287f032e2cc78f75109069073d1370d9ad5
1086133511
Mark R. Diggory
Now that we have BeanUtils "free" versions of these they do not need to be maintained in experimental.


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87f9a6994157acad8dbc3f83151d4136e88167d2
1086133229
Mark R. Diggory
Exception is getting exposed where it wasn't shown before.


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8c6718b9ae454fe78c7110ccae32e470de06a6aa
1086132092
Mark R. Diggory
Using standard jva.bean.Expression API to coerce property value in BeanTransformer.


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133b7ee9f5d62847c8417159f7fa6dc5d8f43459
1086128151
Mark R. Diggory
Removing Dependency on BeanUtils


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1086127817
Mark R. Diggory
Moving BeanTransformer to Experimental


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63c36c4dc2d8598ee28590dd49de2074bc269faf
1086125713
Mark R. Diggory
Added Serialization UID where required.


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1086125675
Mark R. Diggory
Consolidated AbstractDescriptiveStatistics into DescriptiveStatistics. Added Serialization interfaces where required.


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1086125286
Mark R. Diggory
Removing BeanListUnivariate example from test cases. Improving ListUnivariate Serialization Example.


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322706393973a99fc70f0cbd8cadee38bae3aa94
1086097637
Brent Worden
PR: 29000
Made ComplexFormat extend java.text.Format providing complex object formatting and parsing.


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322706393973a99fc70f0cbd8cadee38bae3aa94
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af6140fde695b8619531d04deb6d3e078f8cbfd1
1086050664
Phil Steitz
Added implementation for paired t-test boolean method.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141255 13f79535-47bb-0310-9956-ffa450edef68

af6140fde695b8619531d04deb6d3e078f8cbfd1
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1ffdfcd9b750da404b0a379620c1e592e0ae0744
1086037032
Phil Steitz
Javadoc fixes.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141254 13f79535-47bb-0310-9956-ffa450edef68

1ffdfcd9b750da404b0a379620c1e592e0ae0744
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14455961630d51d1dca0b818649d18e2123b2c36
1085964922
Phil Steitz
Modified to extent ContinuousDistributionAbstractTest.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141253 13f79535-47bb-0310-9956-ffa450edef68

14455961630d51d1dca0b818649d18e2123b2c36
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8686325727251cd77b77e54adcfba660620488bd
1085955215
Phil Steitz
Modified to extend ContinuousDistributionAbstract test, improved coverage.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141252 13f79535-47bb-0310-9956-ffa450edef68

8686325727251cd77b77e54adcfba660620488bd
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da13ce96f28a5f4019ab5476471a9eb933662350
1085896483
Phil Steitz
Modified to extend ContinuousDistributionAbstractTest, improved coverage.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141251 13f79535-47bb-0310-9956-ffa450edef68

da13ce96f28a5f4019ab5476471a9eb933662350
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a08439459a8a559007f51e8540f045200511176f
1085886480
Phil Steitz
Fixed some typos, formatting.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141250 13f79535-47bb-0310-9956-ffa450edef68

a08439459a8a559007f51e8540f045200511176f
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149f30e1d97c9e6893db500da876b292a37a238d
1085881173
Phil Steitz
Modified to extent ContinuousDistrbutionAbstractTest. Improved coverage.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141249 13f79535-47bb-0310-9956-ffa450edef68

149f30e1d97c9e6893db500da876b292a37a238d
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dd54604e2a7c1359c60c47426829a30138bf77e2
1085880242
Phil Steitz
Added endpoint order check to cumulativeProbability(double, double).


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141248 13f79535-47bb-0310-9956-ffa450edef68

dd54604e2a7c1359c60c47426829a30138bf77e2
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e9b8d5cf7d0bbcdf2c00b9d20717ac9eb69a6801
1085871164
Phil Steitz
Modified to extend ContinuousDistributionAbstractTest, improved coverage.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141247 13f79535-47bb-0310-9956-ffa450edef68

e9b8d5cf7d0bbcdf2c00b9d20717ac9eb69a6801
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dd45e40550aeb34d2ce3eb4098b9cc540e6b0ea3
1085871092
Phil Steitz
Initial commit.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141246 13f79535-47bb-0310-9956-ffa450edef68

dd45e40550aeb34d2ce3eb4098b9cc540e6b0ea3
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8dcee5909981e6af930e7f64c0a656c28358cc83
1085376870
Phil Steitz
Added tests for paired t-tests.
PR #29049


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141245 13f79535-47bb-0310-9956-ffa450edef68

8dcee5909981e6af930e7f64c0a656c28358cc83
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763ba3da98c9508e445af50204648cdc6f560fa3
1085376822
Phil Steitz
Added paired difference stats necessary
to support paired t-test computations
efficiently.
PR #29049


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141244 13f79535-47bb-0310-9956-ffa450edef68

763ba3da98c9508e445af50204648cdc6f560fa3
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bf5ff18001f65c85cbbf146b10ef8dafa4652989
1085376545
Phil Steitz
Added support for paired t-tests.
PR #29049
Reported by: Joel Freyss


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141243 13f79535-47bb-0310-9956-ffa450edef68

bf5ff18001f65c85cbbf146b10ef8dafa4652989
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f29d2289da81417e41f0479b0b8fe3f380aea656
1085348059
Timothy O'Brien
Addressed exception "swallowing" in test coverage.  From Phil's recent
email: "If the test case throws an unexpected exception, the test 
should fail.  ....[fix] these by changing the test method signature to 
throws Exception.  This also eliminates the need to import 
MathException everywhere."


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982271aec9c23c2a6a6e31a43b6165d217cb708b
1085291111
Phil Steitz
Javadoc fixes missed in PR #29050 changes.


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83ca7aaf105498bfdf942bdd4713edb4a21ab40a
1085288780
Phil Steitz
Added test case for small samples, adjusted for PR #29050 changes.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141240 13f79535-47bb-0310-9956-ffa450edef68

83ca7aaf105498bfdf942bdd4713edb4a21ab40a
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5ac2a29c8eb73d4119f0af8ecaf6faa81857cd0c
1085288688
Phil Steitz
Modified t-test procedures to allow samples as small
as 2 observations.
PR # 29050
Reported by: Joel Freyss


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141239 13f79535-47bb-0310-9956-ffa450edef68

5ac2a29c8eb73d4119f0af8ecaf6faa81857cd0c
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9942747e88518323443f79abc3fc4ca57228b0b3
1085273775
Timothy O'Brien
Pre Issue 29012, getKurtosisClass() did not have a tolerance; therefore,
any non-zero kurtosis was consistently mesokurtic.  Instead of getting 
into this level of detail, getKurtosisClass() has been removed, it is a
subjective measure not appropriate for DescStat.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141238 13f79535-47bb-0310-9956-ffa450edef68

9942747e88518323443f79abc3fc4ca57228b0b3
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de3e1206da887b91e055e48b5ef13f13765f06a3
1085273552
Timothy O'Brien
ComplexFormat now handles situations where either the real or 
imaginary part is NaN, POSITIVE_INFINITY, or NEGATIVE_INFINITY.
Three new tests were added to address these situations.
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git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141237 13f79535-47bb-0310-9956-ffa450edef68

de3e1206da887b91e055e48b5ef13f13765f06a3
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3484ff78aa1e37350bf0e91e00bb9506064f6b76
1085272421
Timothy O'Brien
Got rid of a number of those pesky "Auto-generated catch block" comments from test code.
PR:
Obtained from:
Submitted by:	
Reviewed by:	
CVS: ----------------------------------------------------------------------
CVS: PR:
CVS:   If this change addresses a PR in the problem report tracking
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CVS:   If you have not had it reviewed then delete this line.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141236 13f79535-47bb-0310-9956-ffa450edef68

3484ff78aa1e37350bf0e91e00bb9506064f6b76
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f7649bcc9f1f61b889b943c2ea71e8db435e9d1d
1085272201
Timothy O'Brien
Removed a series of unused imports in various classes both source and test.
PR:
Obtained from:
Submitted by:	
Reviewed by:	
CVS: ----------------------------------------------------------------------
CVS: PR:
CVS:   If this change addresses a PR in the problem report tracking
CVS:   database, then enter the PR number(s) here.
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CVS:   then name the system in this line, otherwise delete it.
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CVS:   they sent us a patch or a new module, then include their name/email
CVS:   address here. If this is your work then delete this line.
CVS: Reviewed by:
CVS:   If we are doing pre-commit code reviews and someone else has
CVS:   reviewed your changes, include their name(s) here.
CVS:   If you have not had it reviewed then delete this line.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141235 13f79535-47bb-0310-9956-ffa450edef68

f7649bcc9f1f61b889b943c2ea71e8db435e9d1d
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:100644 100644 f44cd312279254c75260d678ff33904ff4b0c850 ec6eb671730e8c6f228077d384f6047a4749b678 M	src/test/org/apache/commons/math/stat/univariate/DescriptiveStatisticsTest.java
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88f8675121ec780b7c2eb68d3c6d4208a7259aa7
1085255962
Phil Steitz
Improved efficiency.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141234 13f79535-47bb-0310-9956-ffa450edef68

88f8675121ec780b7c2eb68d3c6d4208a7259aa7
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7840ab4febd13f7c25d060a034d59790939942e8
1085149302
Phil Steitz
Javadoc.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141233 13f79535-47bb-0310-9956-ffa450edef68

7840ab4febd13f7c25d060a034d59790939942e8
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4456f88239df225ae680b27a9165fbb3c65f9942
1084979204
Brent Worden
Fixed javadoc warnings.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141232 13f79535-47bb-0310-9956-ffa450edef68

4456f88239df225ae680b27a9165fbb3c65f9942
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206201617aae648e12f63d4ab8aa9751157e7e63
1084976192
Brent Worden
Documented some runtime exceptions.
PR: 29013


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141231 13f79535-47bb-0310-9956-ffa450edef68

206201617aae648e12f63d4ab8aa9751157e7e63
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b16e7475445879a703a34e8af515e00b6ffd8995
1084854088
Phil Steitz
Added tests for getSummary() added to SummaryStatistics.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141230 13f79535-47bb-0310-9956-ffa450edef68

b16e7475445879a703a34e8af515e00b6ffd8995
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801524ee8416c759a42a397db6682c4495aa399e
1084853993
Phil Steitz
Added getSummary method returning StatisticalSummaryValues VO.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141229 13f79535-47bb-0310-9956-ffa450edef68

801524ee8416c759a42a397db6682c4495aa399e
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41007260becdf39a970625aea55193cb6c006044
1084853849
Phil Steitz
Initial commit -- value object representing statistical summary.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141228 13f79535-47bb-0310-9956-ffa450edef68

41007260becdf39a970625aea55193cb6c006044
:000000 100644 0000000000000000000000000000000000000000 bb05fd68e6fbec5039909e3bea9904738311f34a A	src/java/org/apache/commons/math/stat/univariate/StatisticalSummaryValues.java

10f49bc2c3b25f0aa61d32ef6d22de6fc788a98f
1084853318
Phil Steitz
Added tests corresponding to examples in user guide.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141227 13f79535-47bb-0310-9956-ffa450edef68

10f49bc2c3b25f0aa61d32ef6d22de6fc788a98f
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809ae375c746b0d51bb5867b89db8ed8adae9185
1084773554
Phil Steitz
Updated missing user guide sections.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141226 13f79535-47bb-0310-9956-ffa450edef68

809ae375c746b0d51bb5867b89db8ed8adae9185
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4b29763e68ada52b522d81cfd9d05f5924fa83ad
1084773515
Phil Steitz
Added overview, removed statistical utilities (covered in stat section).


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141225 13f79535-47bb-0310-9956-ffa450edef68

4b29763e68ada52b522d81cfd9d05f5924fa83ad
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5e4fca4bf69fe6048b53b7a9eb5269990ca687f9
1084773458
Phil Steitz
Added missing sections.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141224 13f79535-47bb-0310-9956-ffa450edef68

5e4fca4bf69fe6048b53b7a9eb5269990ca687f9
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8d825e475b702a65e1568590161bea6bc8f0103f
1084241948
Phil Steitz
javadoc typos.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141223 13f79535-47bb-0310-9956-ffa450edef68

8d825e475b702a65e1568590161bea6bc8f0103f
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e2882045231f6d29a6ffa9b2be9ff18b1698db87
1084241531
Phil Steitz
Modified to extend DiscreteDistributionAbstractTest. Added degenerate test cases.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141222 13f79535-47bb-0310-9956-ffa450edef68

e2882045231f6d29a6ffa9b2be9ff18b1698db87
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2ba7fa4d102f0c42ceb70946d6d91ff8c2d056d6
1084241354
Phil Steitz
Initial commit.


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Phil Steitz
Added consistency checks for constructor parameters.


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Phil Steitz
Improved documentation.


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Phil Steitz
Improved documentation. Added x0 <= x1 check in cumulativeProbability. Required p < 1 in inverseCumulativeProbability.


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Phil Steitz
Changed binomial coeffient computations to allow n = k = 0,
returning 1 in this case.  This is standard and also required
for degenerate hypergeometric distribution computations.


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Phil Steitz
Updated missing userguide sections.


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Phil Steitz
Added significance tests section.


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Brent Worden
Replaced normal CDF routine with one based on the error function.


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Phil Steitz
Removed pending license investigation.


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Brent Worden
Added unit tests.


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Brent Worden
Removed failing test.  Should never have been committed.


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Brent Worden
Added some unit tests for descriptive statistics.  Fixed bug dealing with resizing to infinite window size.


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Phil Steitz
Changed chi-square tests to pass long[] arrays of observed counts.


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1083553494
Phil Steitz
Initial commit of tests replacing TestStatisticTest.


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1083553401
Phil Steitz
Initial commit of code split off from TestStatistic.


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1083553345
Phil Steitz
Initial commit of code split off from TestStatistic. Changed observed vectors to be long[] arrays and added support for independence tests using 2-way tables.


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1083553028
Phil Steitz
Removed file to be replaced by TTestTest, ChiSquareTestTest.


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1083552896
Phil Steitz
Removed file to be replaced by TTest, ChiSquareTest.


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1083552849
Phil Steitz
Removed file to be replaced by TTestImpl, ChiSquareTestImpl.


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Brent Worden
Unit tests.


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Brent Worden
Fixed some checkstyle warnings.  Added some unit tests.


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Brent Worden
Fixed some checkstyle warnings.  Changed checkstyle settings to use APL 2.0.


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Brent Worden
Added user guide entry for continued fractions.


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Brent Worden
Added user guide sections for complex numbers and distributions.


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Brent Worden
Touched up the javadoc comments.


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Brent Worden
Added missing package.html files and added APL 2.0 to existing files.


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1082956595
Phil Steitz
Fixed typos.


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Phil Steitz
Fixed formatting, eliminated swallowed exceptions.


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Phil Steitz
Added BivariateRegression section.


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Phil Steitz
Updated dependencies.


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Phil Steitz
Implemented addValue(double) using DynaBeans.


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Phil Steitz
Javadoc.


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Phil Steitz
Replace deprecated TreeBag with collections 3.0 version.


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Phil Steitz
Updated dependencies to latest release versions
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Brent Worden
Added exceptions to javadoc comments.


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Brent Worden
Added some parameter javadoc comments.


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Brent Worden
Added javadoc comments replete with Mathworld references.


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Brent Worden
Removed some TODO comments.


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Brent Worden
Fixed a TODO by addid a isStrictlyIncreasing method.  This can be refactored later into a more reusable location.


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Phil Steitz
Removed author tags and emails, fixed link to nightlies.


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Mark R. Diggory
BeanListUnivariateImpl was misplaced during the move.


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Mark R. Diggory
Sorry, placed it in the wrong directory


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Mark R. Diggory
BeanListUnivariateImpl was misplaced during the move.


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Phil Steitz
Added missing fail stmnts, fixed index error


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1081747570
Phil Steitz
Fixed error in copyright notic.


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Phil Steitz
Added tests for AbstractUnivariateStatistic.


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Phil Steitz
Reordered checks in test() method to avoid NPE.


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Phil Steitz
Eliminated tabs.


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Phil Steitz
Added tests for indicator functions.
Contributed by: Christopher Schuck
Pr #28343


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Phil Steitz
Moved univariate statistical aggregates into univariate package.


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1081720348
Phil Steitz
Moved BivariateRegression to multivariate subpackage.


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1081716153
Phil Steitz
Fixed imports.


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Phil Steitz
Moved TestStatisticTest to new inference package.


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1081715116
Phil Steitz
Fixed package declarations.


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1081714754
Phil Steitz
Created inference package, moved statistical tests there.


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1081712350
Phil Steitz
Improved verification logic in test().


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1081710045
Phil Steitz
Javadoc. Fixed broken / malformed links.


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Phil Steitz
Added Christopher Schuck to contributors.


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Phil Steitz
Removed obsolete checkstyle properties file.


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Mark R. Diggory
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Newton's method using the new differentiable interface.


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Brent Worden
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Phil Steitz
Added preMultiply(Matrix) tests and modified preMultiply(double[]) tests to
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Phil Steitz
Added RealMatrix preMultiply(RealMatrix).
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Phil Steitz
Modified luDecompose to require that the matrix be square.
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Exposed lu decomposition matrix and associated permutation
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Mark R. Diggory
links are not inherited


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Phil Steitz
Updated to reflect current status.


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Phil Steitz
Improved Javadoc and fixed comparison error in indicator(short).
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Pr #28194


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Phil Steitz
Forced maven build to fail on test failure.


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Phil Steitz
Add tests to verify InvalidMatrixException is thrown by inverse() for singular or non-square matrices.


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Phil Steitz
Javadoc fixes, advertise correct exception in inverse().


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Phil Steitz
Removed misleading javadoc comment on derivative value constraints.


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Phil Steitz
Removed InterpolatorTest, replaced by SplineInterpolatorTest.


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Phil Steitz
Removed CubicSplineFunction, replaced by PolynomialSplineFunction.


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Phil Steitz
Modified tests to use derivative methods.


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Phil Steitz
Added method to check that two double arrays are equal.


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Phil Steitz
Fixed implementation, improved documentation.


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Phil Steitz
Modified constructor to copy input coefficients array.
Changed evaluation to use Horner's method.
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Dropped redundant firstDerivative, secondDerivative methods


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Phil Steitz
Initial commit


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Phil Steitz
Initial commit. Replaces InterpolatorTest.


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Phil Steitz
Initial commit.


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Phil Steitz
Javadoc


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Phil Steitz
Javadoc.


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Phil Steitz
Removed unused import. Javadoc.


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Phil Steitz
Formatting.


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Phil Steitz
Override getTolerance() to work with correct target value.


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Phil Steitz
Added another test, fixed reference to target values.


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Phil Steitz
Adjusted target values for product, log sum and variance based on exact computations using BigDecimal, comparison to R. Changed percentile targets to match implemented algorithm.


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Phil Steitz
Javadoc only. Added reference link.


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Phil Steitz
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Phil Steitz
Corrected javadoc, minor improvment to computation.


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Brent Worden
new approach to testing against certified data sets.

PR: 27692
Obtained from: Brent Worden
Submitted by: Brent Worden


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Phil Steitz
Added tests based on NIST definition.


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Phil Steitz
Renamed internal field, added algorithm documentation.


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Phil Steitz
Fixed code and javadoc to advertise the right exceptions, cleaned up formatting.


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Phil Steitz
Replaced low-accuracy textbook comparison values with values from R.


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Phil Steitz
Stopped swallowing MathExceptions, cleaned up formatting.


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Phil Steitz
Fixed javadoc typo.


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Phil Steitz
Changed to extend RetryTestCase to allow retries when statistical tests fail.


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Phil Steitz
Initial commit.


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1078626069
Phil Steitz
Dropped extraneous line added in error with last commit.


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Phil Steitz
Added test cases corresponding to examples in the User Guide.


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Phil Steitz
Added Frequency example showing cumPct for a value between stored values.


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Phil Steitz
Fixed error in getCumFreq (use custom comparator when one is supplied). Removed tabs.


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Phil Steitz
Filled in missing Frequency section.


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Phil Steitz
Javadoc.


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1078281145
Phil Steitz
Filled in missing content in univariate statistics section.


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Mark R. Diggory
Switching to usage of menu's dtd to insert commons navigation items, using common-menus entity to reference commons menues in navigation.xml, sorting is done by Maven.


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Phil Steitz
Added more content to statistics and distributions user guide.


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Timothy O'Brien
Added JavaDoc to the Complex class, still more work to be done.


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Timothy O'Brien
Added Javadoc to the ComplexFormat class


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1078080610
Phil Steitz
Eliminated author tags.


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2ba4d7e1110f614d4f6301fa443e89292e2ab8a2
1078005513
Brent Worden

PR: 27243
Obtained from: Scott Duchin
Submitted by: Brent Worden

Adding Scott's unit test.  See http://nagoya.apache.org/bugzilla/show_bug.cgi?id=27243 for details.


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37fbe761bc033d97f6c8237dd5276a76244c6b78
1077997420
Phil Steitz
Modified jar goal to include Apache License and notice in the jar. Fixed copyright notices. Reformatted xml.


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1077990457
Phil Steitz
Added copyright notice and reference to 2.0 license.


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Stephen Colebourne
Change to Apache License 2.0


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1077487289
Phil Steitz
javadoc.


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Phil Steitz
Updated license to 2.0


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2d69367fab142b626ce36d418272f99ad8fc3dc1
1077258159
Phil Steitz
javadoc, error message cleanup.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141103 13f79535-47bb-0310-9956-ffa450edef68

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4d630d00dee9e713f2a84551682586bf90f6cee2
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Phil Steitz
Added degree() method, degree checking in derivative computations, made constructor copy coefficient array, cleaned up javadoc.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141102 13f79535-47bb-0310-9956-ffa450edef68

4d630d00dee9e713f2a84551682586bf90f6cee2
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70d8784fd715efc6fa80f9ed5964a7c2b38cf48d
1077077495
Mark R. Diggory
Adding Commons Site Look & Feel configuration to all jakarta-commons/<project>/project.properties


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141101 13f79535-47bb-0310-9956-ffa450edef68

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Brent Worden
fixed spelling error: cummulative -> cumulative.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141100 13f79535-47bb-0310-9956-ffa450edef68

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Phil Steitz
Restored original copyright date.


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1076992396
Phil Steitz
Restored test code inadvertently deleted with last commit.


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1076915044
Phil Steitz
Fixed logic in bean transformer tests to match API.


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Phil Steitz
Stopped header comments from confusing javadoc tool.


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Phil Steitz
Commented out sysouts.


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Phil Steitz
Fixed broken download link, removed local path reference.


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Mark R. Diggory
included navigation should be from commons-build now.


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Phil Steitz
Added load(double[]) method to EmpiricalDistribution.
Contributed by Piotr Kochanski
PR # 26772


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Mark R. Diggory
Moving extension of global project.xml to ../commons-build/project.xml on those project.xml files which originally had it in place.


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Timothy O'Brien
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Phil Steitz
Refactored Frequency to support cummulative frequency counts and percentages. Also eliminated the name property.


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Phil Steitz
Added bound to simulation loop in nextPoisson().


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Mark R. Diggory
Ajusting xdoc templates css styles appropriately, these are just used for testing/preview in xml/xslt enabled browsers.


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1075492413
Mark R. Diggory
Fixing version number.


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1075492328
Mark R. Diggory
Fixing email addresses and changing version to 1.0


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1075472366
Phil Steitz
Converted to commons standard l&f.


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1075440884
Mark R. Diggory
New graphics for white background


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1075424921
Mark R. Diggory
Info for Release Manager, feel free to change.


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1075400642
Mark R. Diggory
adding comment on maven property to skip tests.


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1075395245
Mark R. Diggory
Removing default generated @author Administrator tags from Eclipse


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1075395161
Mark R. Diggory
Actually, we should really be switching to Apache license 2.0.


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1075357574
Phil Steitz
Replaced unnecessary bin search with direct computation.


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b0cf79f06d3db8db60b33e6bda76dd50ef3ec140
1075354074
Phil Steitz
Speed up, clean up.


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68853bb1af4a06b562f786a3513d83b5b69cc2fa
1075352316
Phil Steitz
Javadoc.


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68853bb1af4a06b562f786a3513d83b5b69cc2fa
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3cf4273631140f5dc9913cb1b0785c468ba441a8
1075350747
Timothy O'Brien
Added a simple formatting class for Complex numbers.
I had considered just implementing toString() on the complex
class, but I decided aginst it because some fields prefer
"j" to "i".  This ComplexFormat class is very straightforward,
will a number of TODOs, it is accompanied by a 10
tests.


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1075337343
Mark R. Diggory
Happy New Year, updating all license years to 2004


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141074 13f79535-47bb-0310-9956-ffa450edef68

ea117cb81769e5d205cec3c07b29fda343bd7868
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1075336582
Mark R. Diggory
Happy New Year


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141073 13f79535-47bb-0310-9956-ffa450edef68

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1075335249
Mark R. Diggory
A maven.xml file with a custom goal for cutting math releases. Does snapshot resolution prior to cutting release.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141072 13f79535-47bb-0310-9956-ffa450edef68

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1075323955
Timothy O'Brien
Project dependencies for commons-collctions and commons-lang were pointing to the SNAPSHOT of both.  When this was iriginally done, it was agreed that pointing to a SNAPSHOT was not an option for a release.  Now that compatible version of these to component have been released, the versions have been updated.  Commons Math now depends on collections 2.1 and lang 2.0.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141071 13f79535-47bb-0310-9956-ffa450edef68

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1075320903
Timothy O'Brien
RealMatrix now throws two more runtime exceptions
InvalidMatrixException and MatrixIndexException


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1075320859
Timothy O'Brien
Added .clover and junit temp output to the cvsignore


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1075171424
Phil Steitz
Eliminated unecessary first moment computations.


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1075146076
Mark R. Diggory
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=24962
Obtained from: sergei skarupo

Refactored all sign methods to indicator.
Created new Sign methods per wolfram specs.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141067 13f79535-47bb-0310-9956-ffa450edef68

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Phil Steitz
Added Piotr Kochanski to contributors.


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Phil Steitz
Added Normal Distribution implementations and tests contributed by Piotr Kochanski.


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Phil Steitz
Refactored statistical aggregates to separate stored, storeless implementations. Changed internal sample size counters to longs.


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1074397502
Phil Steitz
javadoc.


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1074363361
Mark R. Diggory
shortDescription ends up going into META-INF properties file. Punctuation makes this break for some reason.


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1074151904
Phil Steitz
Replace deprecated method.


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Phil Steitz
Added data generation doc.


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Phil Steitz
Updated copyright date (after BZ #25972 changes).


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Phil Steitz
Removed completed tasks section, restored future tasks, added conf intervals.


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Phil Steitz
Removed completed/obsolete tasks, added RealMatrix refactoring task.


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William Barker
Fix URL -> File conversion in the test.

I'd forgotten that I had added this to my code when looking at BZ #25972.


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1073849722
Phil Steitz
Fixed source formatting.


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Phil Steitz
Fixed capitalization.


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Phil Steitz
Added humble self to developers.


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Phil Steitz
Modified tests to reflect changes addressing PR #25972.


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Phil Steitz
Refactored file handling methods to eliminate use of URL.toFile(). Addressing PR #25972, reported by Bill Barker.


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Phil Steitz
Refactored load methods to eliminate use of URL.toFile(). Addressing PR #25972, reported by Bill Barker.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141050 13f79535-47bb-0310-9956-ffa450edef68

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Phil Steitz
Added load(URL). Addressing PR #25972, reported by Bill Barker.


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Joerg Pietschmann
Added documentation.


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Henri Yandell
fixed ids, but unable to find Apache id for Albert Chou


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Mark R. Diggory
Additional Matrix Multiply test


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1069618577
Mark R. Diggory
Patch to correct error in matrix multiply 
and the addition od toString method.


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1069617220
Mark R. Diggory
New additions of CholeskySolver contributed by Stefan Koeberle


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14fa7276518f8e2f21d41d261d921cc0cc87b9c8
1069480771
Brent Worden
Here's my idea for approximating derivatives.  It follows the decorator layout of commons-collections.  The main interface point is the UnivariateRealFunctionUtils type which is responisble for creating decorated UnivariateRealFunction objects.  To demostrate the how the decorators could be used, I added the UnivariateRealFunctionUtilsTest class which computes a local maximum of a function using derivative decorators and the default solver.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141043 13f79535-47bb-0310-9956-ffa450edef68

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1069302398
Mark R. Diggory
extends MathException....


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1069302137
Mark R. Diggory
I've thought about this and I like the idea of getting some of this code available in the cvs for experimentation, I'm going ahead and adding it for others to look at and consider.

This directory will not get compiled into the regular build process or future distributions. We can work on an ant script to provide easy build of this if others think it neccessary.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141041 13f79535-47bb-0310-9956-ffa450edef68

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81258e8bc55306b2df1745ccb0140d7e2ef02da8
1069284120
Robert Burrell Donkin
Correct typo in documentation. Submitted by Doug Bateman.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141040 13f79535-47bb-0310-9956-ffa450edef68

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1069248910
Mark R. Diggory
JUnit testing of serialization of all StorelessUnivariates


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b56654a917ef913f10fda581369e86ce1b090064
1069248402
Mark R. Diggory
Additional tooling for simple JUnit testing of serialization.


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941d0aadef49a5586a03287a38b3fb7dca6b6e6c
1069225607
Brent Worden
change email address.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141037 13f79535-47bb-0310-9956-ffa450edef68

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1069212505
Mark R. Diggory
Added Serialization Interface to all Implementations


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d1916458812f417874b0886ed64654bb6a0b8224
1069212174
Mark R. Diggory
Exposed MathException handling in Distributions by adding thows MathException to methods where MathExceptions are caught and replaced with Double.NaN. Added Serialization Interface to Distributions, BivariateRegression and TestStatistic


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141035 13f79535-47bb-0310-9956-ffa450edef68

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03a43587a64873693855606fff17ad8ad3e99699
1069168032
Mark R. Diggory
fix for wrong results and stack overflow error from BivariateRegression
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=24747
Obtained from:
Submitted by:	Sergei Skarupo, Brent Worden 
Reviewed by:	Mark Diggory


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141034 13f79535-47bb-0310-9956-ffa450edef68

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4102896201898b98e15c88d8b985c5b6372d9e3d
1069102573
Mark R. Diggory
Test commit.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141033 13f79535-47bb-0310-9956-ffa450edef68

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94d606f5c97007f4c8ea1eff35adf1c348f88101
1069102534
Mark R. Diggory
Test commit.


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784a5071eec7670b70b0e78d91efe4da5c29366b
1069047489
Mark R. Diggory
Site Logo :-)


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4f2e0e627827e81c894fade07270eb1648944503
1068929974
Mark R. Diggory
Adding more external javadoc links.


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4f2e0e627827e81c894fade07270eb1648944503
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435f91362dedb32c39be181f69bd7a939f770a1a
1068929866
Mark R. Diggory
Adjusted Contibutors and Developers lists.


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d45792d1df1763727e93e10e18bcd353577b85c6
1068926566
Mark R. Diggory
Older versions of the txt files that currently exist in this directory.


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c200ad94ad1a7e96c7cc2ab9f02a672ca70345c5
1068923138
Dirk Verbeeck
reapply (mdiggory    2003/11/01 08:14:45)
  Modification to project.xml to build and locate the cvs tree in the proper location.


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a8d7b3661db269dad434c6d172eaf691ea94deeb
1068923068
Dirk Verbeeck
  PR: http://www.mail-archive.com/commons-dev@jakarta.apache.org/msg29959.html
  Submitted by:	Matt Cliff
  Reviewed by:	Mark Diggory


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141026 13f79535-47bb-0310-9956-ffa450edef68

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2fe1cb9e39c61ceb7afa3bad27d9f58e93404bf0
1068922965
Dirk Verbeeck
reapply DefaultTransformer update


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6399a6d8dffc1b85ac2b4477781e55bc6a468bc6
1068922750
Dirk Verbeeck
remove logging
  Reviewed by:	Mark Diggory


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1068922576
Dirk Verbeeck
remove old files
  Reviewed by:	Mark Diggory


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a7fbd3edc48543cd58e9599a6a81583d30ecdf64
1068922351
Dirk Verbeeck
  Applied Brent Wardens Bug fixes to Complex implementation and tests.


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8c5e07e98aefa427c347f5e53df0625fa755f36d
1068922029
Dirk Verbeeck
  PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=24598
  Submitted by:	Brent Worden
  Reviewed by:	Mark Diggory


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1068921892
Dirk Verbeeck
  PR: http://www.mail-archive.com/commons-dev@jakarta.apache.org/msg29959.html
  Submitted by:	Matt Cliff
  Reviewed by:	Mark Diggory


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1068921804
Dirk Verbeeck
Reapply changeset (mdiggory    2003/11/09 12:17:50)
 Adding documentation for Contributors.
 Adding xsl stylesheets to render xdoc in browser and css to style content, this makes testing documentation additions easier without rendering the entire site. Simply open up xdoc in browser to see what it will look like after rendering.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141019 13f79535-47bb-0310-9956-ffa450edef68

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1068921496
Dirk Verbeeck
Reapply changeset (mdiggory    2003/11/09 12:17:50)
 Adding documentation for Contributors.
 Adding xsl stylesheets to render xdoc in browser and css to style content, this makes testing documentation additions easier without rendering the entire site. Simply open up xdoc in browser to see what it will look like after rendering.


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1068918751
Dirk Verbeeck
add .cvsignore (second try)


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1068912102
Dirk Verbeeck
Reapply changes (mdiggory    2003/11/10 09:43:34)

Moving Distributions to higher level location from o.a.c.m.stat.distirbutions to o.a.c.m.distirbutions
Changing Names of Univariates to DescriptiveStatistics and replacing Interface with Abstract Factory Implementation
Moving BeanTransformer and ListUnivariate implmenetations to test directory.


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b3251a0a33622bae17a37477dd46cab63d5fd508
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Mark R. Diggory
Attempting to recover last revision.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141015 13f79535-47bb-0310-9956-ffa450edef68

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3bbbeec4cfb96f356211cd1c3c9eb4da1fbc73de
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Mark R. Diggory
these were removed earlier than 11/1/03


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141014 13f79535-47bb-0310-9956-ffa450edef68

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0a904461932f2c0455611e77ec6a8d8aced2980b
1068848728
Mark R. Diggory
Attempting to recover last revision.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141013 13f79535-47bb-0310-9956-ffa450edef68

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be2412ecc093e9d684cdf530c8e4c1b61b261601
1067543526
Mark R. Diggory
Comments about Complex


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141009 13f79535-47bb-0310-9956-ffa450edef68

be2412ecc093e9d684cdf530c8e4c1b61b261601
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fe3cd99face8e8df552e3f68e343d01770551fbd
1067543476
Mark R. Diggory
Comments about Complex


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141008 13f79535-47bb-0310-9956-ffa450edef68

fe3cd99face8e8df552e3f68e343d01770551fbd
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8df25775a59ddd77e909a37378ee459c502ab658
1067542963
Mark R. Diggory
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=24241
Submitted by:	Brent Worden


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141007 13f79535-47bb-0310-9956-ffa450edef68

8df25775a59ddd77e909a37378ee459c502ab658
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79eeced125f693f308d2d8a0e8b5691ea1243627
1066834844
Mark R. Diggory
Added references to email threads concering complex numbers.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141006 13f79535-47bb-0310-9956-ffa450edef68

79eeced125f693f308d2d8a0e8b5691ea1243627
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10d2b4b9b16d89026d3e9bacc876c543db3b9d81
1066319980
Mark R. Diggory
Rewrite StatUtils to use static instances of UnivariateStatistics. Benefits? 

1.) In the future, when we establish "Factories" for these objects, we'll be able to plug implementations in, even under our static Utilities classes for these functions. 

2.) The  user can always rely on the same result, whether using the StaticUtil, Univariate Container or direct UnivariateStatistic.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141005 13f79535-47bb-0310-9956-ffa450edef68

10d2b4b9b16d89026d3e9bacc876c543db3b9d81
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8f67ec7c39efbf1afa2b81ad4e0c7a071cf412c0
1066317873
Mark R. Diggory
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=23716
Submitted by:	Brent Warden	
Reviewed by:	Mark Diggory


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141004 13f79535-47bb-0310-9956-ffa450edef68

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23277b96dae68928fbe7a785d080fc0fbf6eb27d
1066317304
Mark R. Diggory
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=23453
Submitted by:	Brent Warden
Reviewed by:	Mark Diggory


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141003 13f79535-47bb-0310-9956-ffa450edef68

23277b96dae68928fbe7a785d080fc0fbf6eb27d
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0c0c3e8f79979c54dde739a9c55c5cc27d46f2c2
1066313107
Mark R. Diggory
A couple additions


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141002 13f79535-47bb-0310-9956-ffa450edef68

0c0c3e8f79979c54dde739a9c55c5cc27d46f2c2
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1939068182855402ed79a39a5d7a87b26446970c
1066032704
Robert Burrell Donkin
Fixed typos in apache license


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141001 13f79535-47bb-0310-9956-ffa450edef68

1939068182855402ed79a39a5d7a87b26446970c
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74c69f200acdc97370a561ea9350502c962fe603
1065390617
Timothy O'Brien
Fix to license, changed "names" to "name" in section 5


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@141000 13f79535-47bb-0310-9956-ffa450edef68

74c69f200acdc97370a561ea9350502c962fe603
:100644 100644 202d60b26bdedf2873563738cd10eee34646afe7 8e419339ca0c05561fa8af2170aeccedaf2266f2 M	LICENSE.txt

eccf8898d10bfe9854aa5a736784c076ff6f605b
1064636014
Mark R. Diggory
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=23187
Obtained from:
Submitted by:	Brent Worden 
Reviewed by:	Mark Diggory


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140999 13f79535-47bb-0310-9956-ffa450edef68

eccf8898d10bfe9854aa5a736784c076ff6f605b
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92a2a61ebbe174a71ea2e6b42a0464b3a565402f
1064604633
Joerg Pietschmann
Fixed JavaDoc warnings.
Fixed a few TODOs in the interpolation code.
Updated project TODO list.
Promoted myself to "developer".


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140998 13f79535-47bb-0310-9956-ffa450edef68

92a2a61ebbe174a71ea2e6b42a0464b3a565402f
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2b001c2ab1c546f3d6854dcb3e6b6e0cfcfe0aeb
1064434550
Joerg Pietschmann
User manual for root finding, distribution framework and special functions.
Contributed by: Brent Worden
Reference: #23367, #23361, #23389


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140997 13f79535-47bb-0310-9956-ffa450edef68

2b001c2ab1c546f3d6854dcb3e6b6e0cfcfe0aeb
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9dd9778a7cf24ea9fad3bb67bcaec9bc3728ce47
1063826972
Mark R. Diggory
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=23013
Submitted by:	Brent Warden
Reviewed by:	Mark Diggory

I also regenerated the build.xml using Maven to get the Discovery dependency added in.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140996 13f79535-47bb-0310-9956-ffa450edef68

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37064526036889ab5206776b0913a37ef6006f76
1063826349
Mark R. Diggory
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=23010
Submitted by:	 Brent Worden 
Reviewed by:	Mark Diggory


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140995 13f79535-47bb-0310-9956-ffa450edef68

37064526036889ab5206776b0913a37ef6006f76
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bc31e531edcdcab235585086ced5eb1dec33e1d6
1062904376
Mark R. Diggory
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=22954
Submitted by:	Brent Worden
Reviewed by:	Mark Diggory


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140994 13f79535-47bb-0310-9956-ffa450edef68

bc31e531edcdcab235585086ced5eb1dec33e1d6
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d7fff63d95cd9e28bfd31006c89d89e454ec7c53
1061053575
Joerg Pietschmann
Added classes for binominal distribution and some infrastructure for other
discrete distributions.
Contributed by Brent Worden (brent@worden.org)


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140993 13f79535-47bb-0310-9956-ffa450edef68

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335ef8c47aa707b714ffb75a5ed7acd9e411200b
1060868469
Mark R. Diggory
Some reorganization of the Tasks List.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140992 13f79535-47bb-0310-9956-ffa450edef68

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1060401821
Mark R. Diggory
Just Checkstyle and Javadoc corrections


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140991 13f79535-47bb-0310-9956-ffa450edef68

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5b02b4da9d494fa99cf608f1497e509712ff1680
1059685657
Timothy O'Brien
Some rewording, mostly indentation.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140990 13f79535-47bb-0310-9956-ffa450edef68

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578b804429d7c905d06f019c62c7596e51d22917
1059602797
Timothy O'Brien
Bugzilla #22002 from Brent W's patch - refactoring of UnivariateRealSolver


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140989 13f79535-47bb-0310-9956-ffa450edef68

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8d0aca99fe6caab0f260343c22e55bece28499ab
1059602291
Timothy O'Brien
Bugzilla #22002: applied Brent W's patch which dealt with URSFactory and URSFImpl as well as numerous improvements to javadoc


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140988 13f79535-47bb-0310-9956-ffa450edef68

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4456d90840a829fbe09fe506ab5e78288dc2f591
1058240710
Mark R. Diggory
Application of "apply(Functor x)" strategy (thank you Al Chou) for evaluating UnivariateStatistics against the internal storage collection without exposing the collection or its bounds.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140987 13f79535-47bb-0310-9956-ffa450edef68

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1058240330
Mark R. Diggory
minor javadoc cleanup


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140986 13f79535-47bb-0310-9956-ffa450edef68

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3a6b1537e593b91e60de7a5e112bf47c47a5f4c3
1058240231
Mark R. Diggory
minor javadoc cleanup


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140985 13f79535-47bb-0310-9956-ffa450edef68

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1057939154
Timothy O'Brien
Patch for bug 21516 from Brent Worden. Fixed checkstyle bugs and added maven.javadoc.links to project.properties


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140984 13f79535-47bb-0310-9956-ffa450edef68

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1057787193
Mark R. Diggory
Changes the Univariate implementations to use the UnivariateStatistic package. Slims down StatUtils by removing some of the higher moments. Reimplmenets ListUnivariate to work with NumberTransformers, turning into a Mixed Object List Univariate.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140983 13f79535-47bb-0310-9956-ffa450edef68

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f1a917482c722d594df5b7f6e286395aadbd5f5a
1057781280
Mark R. Diggory
Adding J. Pietschmann


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140982 13f79535-47bb-0310-9956-ffa450edef68

f1a917482c722d594df5b7f6e286395aadbd5f5a
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8b3db797f220e304e215130d5e0d89e7464151bd
1057781053
Mark R. Diggory
Removing @author tags, adding missing @version tags.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140981 13f79535-47bb-0310-9956-ffa450edef68

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05c18b9f8c991b44a825c9c6fdf488bf467b3a67
1057768110
Mark R. Diggory
Changing getValue to getResult.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140980 13f79535-47bb-0310-9956-ffa450edef68

05c18b9f8c991b44a825c9c6fdf488bf467b3a67
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825163490d3e3b92210028db76d8e21ac388a7a7
1057767858
Mark R. Diggory
In cases where "getResult" contains a statistical calculation, it now 
checks if the internal state of the underlying statistic has changed 
and only recalculates if this is true. this way muliple calls to getResult 
when the staistic has not been incremented are less expensive 
because it is only returning a property value.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140979 13f79535-47bb-0310-9956-ffa450edef68

825163490d3e3b92210028db76d8e21ac388a7a7
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d6741b72a9aa212cc681462ff97f5d69f0364edb
1057636875
Mark R. Diggory
actually this is ok, its a problem with the fact that the directory already exists in the cvs.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140978 13f79535-47bb-0310-9956-ffa450edef68

d6741b72a9aa212cc681462ff97f5d69f0364edb
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f8e28a2611a4d8c382e26c7dd5228f3052283c23
1057636480
Mark R. Diggory
This is an attempt to get directories working properly in .cvsignore


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140977 13f79535-47bb-0310-9956-ffa450edef68

f8e28a2611a4d8c382e26c7dd5228f3052283c23
:100644 100644 2dda873d1d51e2757461e0982030150adb3ca817 1f6b4cfc2a51d5901c3ed64a692db3291e9525d7 M	.cvsignore

98eff8c9db069b8297234d86c81f2c42bccd6191
1057635852
Mark R. Diggory
Its more logical not to have increment return a value, this allows a 
distict separation between the calculation of moments and the 
calculation of the actually return value of getVlaue in Storageless 
approaches. With this benifit it is no longer neccessary to calculate 
all the statistics moment based statistics on addValue, only the 
underlying moment itself.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140976 13f79535-47bb-0310-9956-ffa450edef68

98eff8c9db069b8297234d86c81f2c42bccd6191
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:100644 100644 1b2b6676d22fb729174835629cb53e2f3a37e1c4 5cc2e34cbe05ea87820768c80b0045d2c643aa1e M	src/java/org/apache/commons/math/stat/univariate/summary/SumOfLogs.java
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fbb87a296305fe4f813ccbfa8683c83f479a8e7d
1057620314
Mark R. Diggory
Removing more of my author tags.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140975 13f79535-47bb-0310-9956-ffa450edef68

fbb87a296305fe4f813ccbfa8683c83f479a8e7d
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:100644 100644 ce60ec506b8415f98b8a6d806d3f6f6b71381b9f be4336e0399e28e3a06d129b32ed7a7a2db7754e M	src/java/org/apache/commons/math/stat/Univariate.java
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:100644 100644 00737d4bc1b2d8b46d86b399c2d60ee4948de9c5 1aefe8378c42ad93185fa832566426b5a1f0a617 M	src/java/org/apache/commons/math/util/BeanTransformer.java
:100644 100644 55579c1075c89c456fb60c3cb961ac7bc2dd1eda d6a47ed4a61ef267aed208c2b4b0206ece380ceb M	src/java/org/apache/commons/math/util/DefaultTransformer.java
:100644 100644 d9bab3387d856f20e2f98e9976be8aa83bbe3b91 0b7504165d9bf79b8be494fef8f7ac4337af5fd0 M	src/java/org/apache/commons/math/util/NumberTransformer.java
:100644 100644 554a5d33c5fcffae4b2e45f0888b43f4f1907c05 acbeb7822a2a6f377ed2ef431ecdd5cb1ba286cf M	src/java/org/apache/commons/math/util/TransformerMap.java
:100644 100644 430601b211e839093c12f1a14e3da4223e1c55eb b5350bdec285f7ddadb485bb2109c22144bdcd9a M	src/test/org/apache/commons/math/stat/CertifiedDataTest.java
:100644 100644 681ee41b3422c5c4aa64bb45d0cbb8515fb734a3 6ced45d36604d8c4b8ab0e82f07f6c7ce456b5e1 M	src/test/org/apache/commons/math/stat/StatUtilsTest.java

c6231e78a1ea882b8b6d2b033c32adbe2108a743
1057619962
Mark R. Diggory
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=21360
Submitted by:	phil@steitz.com

I applied this patch on the sourcecode, I think all project.xml and 
xdoc documentation should retain some authorship at this time. If 
we decide otherwise we can change this in the future.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140974 13f79535-47bb-0310-9956-ffa450edef68

c6231e78a1ea882b8b6d2b033c32adbe2108a743
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:100644 100644 6f0de0ba935fa647e763041bdee2280e7a38429b e34bf59aeda2e90ce22f1b6863d283e38a0b5767 M	src/java/org/apache/commons/math/linear/RealMatrixImpl.java
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:000000 100644 0000000000000000000000000000000000000000 a287e7273c975f1c18c6e2517bfec2281b001fe9 A	src/test/org/apache/commons/math/stat/univariate/InteractionTest.java
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:100644 100644 9a50eb5d6a24fc3c69c41200f5f467dbc3ece0f5 5ca01365ea7772ff1770a0a79e62ac8a2d9123cf M	src/test/org/apache/commons/math/stat/univariate/summary/ProductTest.java
:100644 100644 5e364309a9758699137e3753c3f7d3f8f72c1698 c633f9c62dcc82bdf1960637bb12053ae8579139 M	src/test/org/apache/commons/math/stat/univariate/summary/SumLogTest.java
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:100644 100644 403cdd2562886473b55d25ca94319915417f1e9c 387649d7b814bb163d4e21cbbc44d01ae9ffc612 M	src/test/org/apache/commons/math/stat/univariate/summary/SumTest.java
:100644 100644 a4b750e1bed5f2a9d1d018e5b24b6d82bdd8c8a4 5e4bbe048b803a881a9be567dfda171474fb7ff7 M	src/test/org/apache/commons/math/util/MathUtilsTest.java

9cf28b0197259a4884a7df51cf9f17611e7c24a6
1057619208
Mark R. Diggory
This commit adds the constructor and internals for setting and External Moment object to base internal calculations on. It also remove author tags and adds a new class FirstMoment to the project.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140973 13f79535-47bb-0310-9956-ffa450edef68

9cf28b0197259a4884a7df51cf9f17611e7c24a6
:000000 100644 0000000000000000000000000000000000000000 6cddbe8d83339340644eb1bfd00b5baeaf39f66a A	src/java/org/apache/commons/math/stat/univariate/moment/FirstMoment.java
:100644 100644 08cd7ba6dabe546b581e5ffbab975c56c6a02844 cf3e76f134d7f3138c88298921d95fc68f88fffb M	src/java/org/apache/commons/math/stat/univariate/moment/FourthMoment.java
:100644 100644 e076206c385809badef4bf3d77577c3695c27ff5 808dc5568c18f7e736f6c926783d6fdc90605f42 M	src/java/org/apache/commons/math/stat/univariate/moment/GeometricMean.java
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:100644 100644 b087dc95251d0e7e763086c1d871f1345b27908e 5f71f9a6e33a55b2f72f3dfbc71a5f7e404e7c75 M	src/java/org/apache/commons/math/stat/univariate/moment/Skewness.java
:100644 100644 c65cefd909c0ec4875447e61372367902ff8e025 c3f676b82252fdc2bcfd47e356c0f694790f5248 M	src/java/org/apache/commons/math/stat/univariate/moment/StandardDeviation.java
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5453711fb8097a0d750338f15f18f1868294dd78
1057597053
Mark R. Diggory
Fixing GeoMean and adding appropriate test.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140972 13f79535-47bb-0310-9956-ffa450edef68

5453711fb8097a0d750338f15f18f1868294dd78
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9b6845c0560fb8aa7a53aff3322218288ca067b4
1057587320
Mark R. Diggory
removed extra calculation.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140971 13f79535-47bb-0310-9956-ffa450edef68

9b6845c0560fb8aa7a53aff3322218288ca067b4
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cc7965242bcce95bd10348b0bc32076e6e9d16ca
1057586233
Timothy O'Brien
This XML configuration file will work with the most recent Maven plugin for Checkstyle, just change the project.properties to point to this XML file.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140970 13f79535-47bb-0310-9956-ffa450edef68

cc7965242bcce95bd10348b0bc32076e6e9d16ca
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6fa3edd33761edf5441818b57944b58271126a66
1057544119
Mark R. Diggory
Addition of optimal array based evaluations available in StatUtils. These are not delegates to StatUtils, they are implementations.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140969 13f79535-47bb-0310-9956-ffa450edef68

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9eed265da3a878d6375c6702d4cd1179c4f1194b
1057543967
Mark R. Diggory
Adding incremental tests for storeless univariates as evaluations are now based on the implementations that were previously provided by StatUtils.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140968 13f79535-47bb-0310-9956-ffa450edef68

9eed265da3a878d6375c6702d4cd1179c4f1194b
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0d458038258c271d6b7462757850a0bc45ac5cbd
1057475888
Mark R. Diggory
Rolling Back StatUtils to previous version.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140967 13f79535-47bb-0310-9956-ffa450edef68

0d458038258c271d6b7462757850a0bc45ac5cbd
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f4f3c220659ac8fa298e9f9f9cf1059b65cd88c7
1057462067
Mark R. Diggory
Fixes Compilation error that did not get commited last time.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140966 13f79535-47bb-0310-9956-ffa450edef68

f4f3c220659ac8fa298e9f9f9cf1059b65cd88c7
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f75a00eb679d7da39b75a1e055d38379aadee2a0
1057433138
Mark R. Diggory
Correcting checkstyle and javadoc errors.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140965 13f79535-47bb-0310-9956-ffa450edef68

f75a00eb679d7da39b75a1e055d38379aadee2a0
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be6420472edb8444332662f237cbac040628c7af
1057433058
Mark R. Diggory
Rotating Commons Collections version to SNAPSHOT to get latest primitive collections implementations.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140964 13f79535-47bb-0310-9956-ffa450edef68

be6420472edb8444332662f237cbac040628c7af
:100644 100644 b540b1887592dc0747fcf79cd9d03fa49f8ee25d d7b9bc2d0787a7d8514f47fb9f66cef39b3cda4e M	build.xml
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37ffdce101da66308d5201b24fc8ed9a77873310
1057429775
Mark R. Diggory
This is an Implementation of StatUtils that uses the new UnivariateStatistic Framework and passes all JUnit StatUtils tests.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140963 13f79535-47bb-0310-9956-ffa450edef68

37ffdce101da66308d5201b24fc8ed9a77873310
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01f0a64cbee379189d9f6b3ea712b30beaf3240d
1057429490
Mark R. Diggory
Initial Tests for UnivariateStatistic package Hierarchy.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140962 13f79535-47bb-0310-9956-ffa450edef68

01f0a64cbee379189d9f6b3ea712b30beaf3240d
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d1bb06a472cd1fc7d1ba9d67f0baca73ff20789e
1057429432
Mark R. Diggory
This commit adds the individual UnivariateStatistic package hierarchy, this hierarchy
is currently independent of the Univariate and StoreUnivariate Implementations and provides
storeless and storage based mechanisms for working with the individual
UnivariateStatistic implementations.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140961 13f79535-47bb-0310-9956-ffa450edef68

d1bb06a472cd1fc7d1ba9d67f0baca73ff20789e
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671d5c1d5ecaac8943e16a7e9ba08c710a4d9ef3
1057429202
Mark R. Diggory
This patch exposes the start index, internal double array of DOubleArray Implementations.

It adds a NumberTransformer framework for mapping Objects and Bean Properties to double primitives
It also corrects some checkstyle and javadoc errors.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140960 13f79535-47bb-0310-9956-ffa450edef68

671d5c1d5ecaac8943e16a7e9ba08c710a4d9ef3
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1c6e9c124df3432605bbda8a5b5e1de81d57ad6a
1057428815
Mark R. Diggory
This patch exposes the start index, internal double array of DOubleArray Implementations.

It adds a NumberTransformer framework for mapping Objects and Bean Properties to double primitives
It also corrects some checkstyle and javadoc errors.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140959 13f79535-47bb-0310-9956-ffa450edef68

1c6e9c124df3432605bbda8a5b5e1de81d57ad6a
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2a02f635e9fafbc59f755bd0a434639f2a184ab6
1057428331
Mark R. Diggory
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=21313
Submitted by:	brent@worden.org


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140958 13f79535-47bb-0310-9956-ffa450edef68

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28c785435a37f540663a67ad082a9674ab0816f2
1057427897
Mark R. Diggory
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=21295
Submitted by:	brent@worden.org


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140957 13f79535-47bb-0310-9956-ffa450edef68

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c33306f4bc5a4dd0321d4f8581570c2bf1277415
1057424353
Mark R. Diggory
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=21277
Submitted by:	phil@steitz.com


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140956 13f79535-47bb-0310-9956-ffa450edef68

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eb8a3fa490e8c0a05276771f7e58b445f6af3259
1056747508
Mark R. Diggory
Removal of statistical (min/max) and deleteFrontElements methods from DoubleArray interface (per our previous discussion)

Adjusted dependent Test and StoreUnivariateImpl classes accordingly to accomidate changes.

Added new constructor to FixedDoubleArray for double[].


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140955 13f79535-47bb-0310-9956-ffa450edef68

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85e3b01b74cba2f79d179e565da0a957c7b9c0b6
1056745912
Mark R. Diggory
Eliminated extra pass to calc mean in std calculation.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140954 13f79535-47bb-0310-9956-ffa450edef68

85e3b01b74cba2f79d179e565da0a957c7b9c0b6
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4758c33a901faf0cd67fa013245468d9464b7f32
1056689993
Mark R. Diggory
moving test solvers to test directory


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140953 13f79535-47bb-0310-9956-ffa450edef68

4758c33a901faf0cd67fa013245468d9464b7f32
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73eb9d352a71981371fa78907bacdccbd77d017d
1056689967
Mark R. Diggory
These only need to be in tests


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140952 13f79535-47bb-0310-9956-ffa450edef68

73eb9d352a71981371fa78907bacdccbd77d017d
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a027cc9f26c2dc6daa8a997e00de1dd16eb6c56c
1056688182
Mark R. Diggory
Exceptions handling for math packages


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140951 13f79535-47bb-0310-9956-ffa450edef68

a027cc9f26c2dc6daa8a997e00de1dd16eb6c56c
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d2a0c1a9b674fcb46d3fd17560bf6bcf46adf6eb
1056547885
Mark R. Diggory
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=21015
Submitted by:	phil@steitz.com


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140950 13f79535-47bb-0310-9956-ffa450edef68

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b2ddd1d660875c28930302763be54ce02a6a9667
1056505176
Mark R. Diggory
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=21005
Submitted by:	phil@steitz.com


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140949 13f79535-47bb-0310-9956-ffa450edef68

b2ddd1d660875c28930302763be54ce02a6a9667
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1670ee0eba24b007b9640a6161d443afb8a10a60
1056504946
Mark R. Diggory
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=21003
Submitted by:	phil@steitz.com


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140948 13f79535-47bb-0310-9956-ffa450edef68

1670ee0eba24b007b9640a6161d443afb8a10a60
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ca5ce6e4550fe1c3fba2c1cc59d691db798a8c00
1056504558
Mark R. Diggory
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=21023
Submitted by:	j3322ptm@yahoo.de HotFusionMan@Yahoo.com


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140947 13f79535-47bb-0310-9956-ffa450edef68

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8ae9b5c2596144542cb4bc02803b1670c0c14722
1056463720
Mark R. Diggory
Added Checks for Exceptions


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140946 13f79535-47bb-0310-9956-ffa450edef68

8ae9b5c2596144542cb4bc02803b1670c0c14722
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2dd0a2b7f34e5d53c1bd0c098f509e3c18cbf27b
1056463412
Mark R. Diggory
Additon of begin and length controls to StatUtils. Addition on test for array conditions.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140945 13f79535-47bb-0310-9956-ffa450edef68

2dd0a2b7f34e5d53c1bd0c098f509e3c18cbf27b
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bcbf7e66b7b20dcc9471f7977f190b5ab4d47e73
1056423748
Mark R. Diggory
This is the second half of this pr. Commit of analysis solver tests.
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=20844
Submitted by:	J. Pietschman


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140944 13f79535-47bb-0310-9956-ffa450edef68

bcbf7e66b7b20dcc9471f7977f190b5ab4d47e73
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a222e19260b3b93f6a7b1e70f96e03f5fe445ec3
1056423700
Mark R. Diggory
This is the first half of this pr. Commit of analysis solvers.
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=20844
Submitted by:	J. Pietschman


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140943 13f79535-47bb-0310-9956-ffa450edef68

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dcede03d186e12e017469b1ea43e505a268d0184
1056254277
Mark R. Diggory
Initial commit of package refactorings discussed in the group.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140942 13f79535-47bb-0310-9956-ffa450edef68

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a6637ae432f9a7cf0fa5b6d7500eaa1c59878e03
1056238707
Mark R. Diggory
Removing Product from Univariate Interface, applying sumLog changes to geomean in AbstractStoreUnivariate.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140941 13f79535-47bb-0310-9956-ffa450edef68

a6637ae432f9a7cf0fa5b6d7500eaa1c59878e03
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03d9eb52414e63f7cbbc6188d76af04dd3d79c1a
1056236843
Mark R. Diggory
moving TestStatistic to stat package.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140940 13f79535-47bb-0310-9956-ffa450edef68

03d9eb52414e63f7cbbc6188d76af04dd3d79c1a
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772b61f141b8d26c103e328f1df771e0412b367f
1056236571
Mark R. Diggory
Moving TestStatisticTest to stat package.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140939 13f79535-47bb-0310-9956-ffa450edef68

772b61f141b8d26c103e328f1df771e0412b367f
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e59807bc3edf8a679fa6d25cb921a2de659bd69d
1056236439
Mark R. Diggory
Moving TestStatistic implementation / interface into stat package.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140938 13f79535-47bb-0310-9956-ffa450edef68

e59807bc3edf8a679fa6d25cb921a2de659bd69d
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619b6874f0bc50a8fa72631dca65e14b7c32e46b
1056164095
Mark R. Diggory
Removed last of the Math.pow's


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140937 13f79535-47bb-0310-9956-ffa450edef68

619b6874f0bc50a8fa72631dca65e14b7c32e46b
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35275845f7d64563a17a7b1e831821059c6d68af
1056162109
Mark R. Diggory
This is a multifile commit, it covers checkstyle errors in javadoc etc.
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=20936
Submitted by:	brent@worden.org


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140936 13f79535-47bb-0310-9956-ffa450edef68

35275845f7d64563a17a7b1e831821059c6d68af
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b6cf1781176295087b67a79684f4e4429f1fae7a
1056161803
Mark R. Diggory
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=20980
Submitted by:	phil@steitz.com


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140935 13f79535-47bb-0310-9956-ffa450edef68

b6cf1781176295087b67a79684f4e4429f1fae7a
:100644 100644 2377b416c9fe277663d242ac1254429fb63b2b39 e20114bde3d87a552d917a4f1dc0729a91f34563 M	src/java/org/apache/commons/math/stat/AbstractStoreUnivariate.java

2b57d6595c2c9095dc09bd42ba40fe1c69df0735
1056161621
Mark R. Diggory
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=20979
Submitted by:	phil@steitz.com


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140934 13f79535-47bb-0310-9956-ffa450edef68

2b57d6595c2c9095dc09bd42ba40fe1c69df0735
:100644 100644 6197018002f1447e5c1ff55825ad9dab4bbebb12 865cff5a4c0ece98bd7e5cb951ec18310b2de8a4 M	src/java/org/apache/commons/math/stat/BivariateRegression.java
:100644 100644 b31bda655975eeb7c4ba8aa8436a1e136d4778ff 5e448114662358b7d66e280d8aee91c27032228b M	src/test/org/apache/commons/math/stat/BivariateRegressionTest.java

edbc57991142918547aa64e921408d1883cd670c
1056161303
Mark R. Diggory
Adding tests for kurtosis and skew to UnivariateImpl testcase. Correcting initialization of moments in UnivariateImpl.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140933 13f79535-47bb-0310-9956-ffa450edef68

edbc57991142918547aa64e921408d1883cd670c
:100644 100644 f099be140d3c8d959d5cb1843c13537cea6eb257 cfe4e60d5bc117732d4c7c88294925285ab5761a M	src/java/org/apache/commons/math/stat/UnivariateImpl.java
:100644 100644 b62a5a34af2aec6e6aba63363ad58086d590775c 4a71595183a609189c4038b3b2d448f4393fa856 M	src/test/org/apache/commons/math/stat/UnivariateImplTest.java

008db7522d3097ac6fafbaec8b9e2340c0948e15
1056160517
Mark R. Diggory
Removing mode.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140932 13f79535-47bb-0310-9956-ffa450edef68

008db7522d3097ac6fafbaec8b9e2340c0948e15
:100644 100644 58b8698d2b1f61ead28cd3ea2ceed9620e8a1df2 389cf0708c2dd4b587edb3c3ce3538de387aca27 M	src/java/org/apache/commons/math/stat/StoreUnivariate.java

7e1789e0e9a17959d128e074773e7729e4a55c02
1056143147
Mark R. Diggory
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=20964
Submitted by:	phil@steitz.com


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140931 13f79535-47bb-0310-9956-ffa450edef68

7e1789e0e9a17959d128e074773e7729e4a55c02
:100644 100644 c5f7e8734003032ceb540b82b2c77dff4ea36d6f 2377b416c9fe277663d242ac1254429fb63b2b39 M	src/java/org/apache/commons/math/stat/AbstractStoreUnivariate.java
:100644 100644 6bd50a3dbc466cb1685d9a3277945292692cc4c3 d34535af391e93c48b23dcc3c98460e31ce3585a M	src/java/org/apache/commons/math/stat/StatUtils.java

792b7349ce9122d61ef49571a449b1de2567ca0e
1055971503
Timothy O'Brien
Removed the proposed solvers, many compilation problems and a broken unit test.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140930 13f79535-47bb-0310-9956-ffa450edef68

792b7349ce9122d61ef49571a449b1de2567ca0e
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:100644 000000 23fb0a723e6157e58aa943f1359a9294648a8efb 0000000000000000000000000000000000000000 D	src/java/org/apache/commons/math/UnivariateRealFunction.java
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4713f7f1d8a3d2a6a91dc57bb237e8e92b5a1429
1055966979
Timothy O'Brien
Why not? Readded the statcvs report....


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140929 13f79535-47bb-0310-9956-ffa450edef68

4713f7f1d8a3d2a6a91dc57bb237e8e92b5a1429
:100644 100644 abc8c3aae8bc2b0cd962cfb86401cf0789020155 4e6a07185fd0c524ad93e065f73691d64dba93eb M	project.xml

30f5dda2b821cec8f065c7c4f7236bcd021a0a67
1055966808
Timothy O'Brien
Readded some activity reports to the maven site, now that we have more activity some of these reports make more sense


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140928 13f79535-47bb-0310-9956-ffa450edef68

30f5dda2b821cec8f065c7c4f7236bcd021a0a67
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ef7a59e739b91907fe70543504b21812ee759bfc
1055966547
Timothy O'Brien
1. Gamma.logGamma was expecting epsilon and maxIterations but these parameters
were not being referenced in that function.  These parameters has been removed.

2. Also, the Lanczos coefficients are now a private static member variable of
the Gamma class.


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45d406f1e0c794dd223bc53af096b6a454040975
1055951995
Mark R. Diggory
Initial Deposit for StatUtils unit testing, this was derived from StoreUnivariateImplTest.


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1055944644
Mark R. Diggory
Last commit got formated with tabs, this is formated with spaces


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8e3d2c7383a7f98c9e7d553ea12e5c1eb190b70f
1055944055
Mark R. Diggory
Degegates to StatUtils now for "window" case. Implemented skew and kurt using recursive moments.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140924 13f79535-47bb-0310-9956-ffa450edef68

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1055940144
Mark R. Diggory
Rolling back to previous version.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140923 13f79535-47bb-0310-9956-ffa450edef68

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c67cee2fad477f7b6bc67fe6ecdd27613cb193ad
1055905545
Mark R. Diggory
Simplified calculation, removing extra division.


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eb7bc0170eb129f6225dcb6ef696f530a5d8b23c
1055905288
Mark R. Diggory
Adding corrected two-pass algorithm for variance calculation.


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82074a733ad19a6e8c3ea15b9556a46d9c597b33
1055901363
Mark R. Diggory
Addition of sumLog method (natural) to get the sum of the Logs. Altered GeometricMean to calculate the geometricMean from the sum of logs.


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0b27a8a40440849bf48f9f2464291a075c46a230
1055892187
Mark R. Diggory
Addition of product and geometericMean.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140919 13f79535-47bb-0310-9956-ffa450edef68

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ead8450fb71c098abc44552d963553c80bb6d711
1055890817
Mark R. Diggory
Missed two static signatures in the methods


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814629453f583055f6540fba3599e8620dfca4a2
1055890538
Mark R. Diggory
Initial Addition of StatUtils. Some methods need review, implementation and possibly debugging


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3b18c97188957a5c777e68e86b360526fa0d73f5
1055884568
Timothy O'Brien
alternative root finding framework, and Brent-Drekker solver

Issue: 20844
Submitted by: J. Pietschmann
Reviewed by: T. O'Brien


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5eb62fddf202d0c54bdde3e4b4a2a354fba05126
1055869815
Mark R. Diggory
Rolling back to version 1.5 to provide for group discussion on the subject


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140915 13f79535-47bb-0310-9956-ffa450edef68

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89f4c18e5974e11a1972ef545eb417f48646ef55
1055799495
Mark R. Diggory
I'm not sure with this algorithm, but I'm going to add this test back into the Variance that protects it from returning a value less than 0.


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1055798989
Mark R. Diggory
More correction of Javadoc errors.


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1055798670
Mark R. Diggory
More correction of Javadoc errors that end up propigating into UnivarImpl and other implementations.


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1055797133
Mark R. Diggory
Correction of Javadoc errors that end up propigating into UnivarImpl and other implementations.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140911 13f79535-47bb-0310-9956-ffa450edef68

95360af5165f5bb04038d92c7d3c3c49f53f2790
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89adf90e262e8867b76cc1b2ede7d1a69d1592bc
1055796144
Mark R. Diggory
This house-cleaning improves UnivariateImpl, in a number of ways.

1.) insertValue is abolished and its contents are now in addValue

2.) UnivariateImpl now extends AbstractStoredUnivariate to deligate to
 those methods directly for calculating statistics when storage is active, all methods
 deligate to AbstractStoreUniv when the DoubleArray is no longer null. This also means
that a majority of the StoreUnivariate interface is now implemented in Univariate to provide
deligates when storage is active, and to throw runtime exceptions when its not (this at least until 
we establish rolling implementations for those methods). We should consider consolidating the 
StoreUnivariate interface into the Univariate interface

3.) Calculations in addValue have been reorganized, only calculations for
the storageless solution are now present in this class. otherwise the value is 
added/Rolling to the Double array when appropriate.

I'm satisfied that it passes all Unit tests.


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9a179ff85bd1636f5bf0e9cb5acdc2060db333e3
1055794423
Timothy O'Brien
Added the graceful handling of invalid and NaN domain values.  Created test
cases to verify the graceful handling.

Issue #: 20774
Submitted By: Brent Worden
Reviewed By: Tim O'Brien


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9d1be9a1013a799940ed80eb7a78f1a79f12e54c
1055773770
Mark R. Diggory
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=20782
Submitted by:	HotFusionMan@Yahoo.com

I added this, but there are changes I'd like to make in the near future. Only the "running" aspects of the variance calc should be in the insertValue function, all other calculation should be in the getVariance function.


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1055696499
Mark R. Diggory
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=20783
Submitted by:	phil@steitz.com


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200ab0ec4adeeea15f6b641d56170989cf16cb58
1055564683
Mark R. Diggory
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=20773
Submitted by:	brent@worden.org


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df6556b793418928d170aae42741b9f56e3ccd68
1055564269
Mark R. Diggory
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=20766
Submitted by:	brent@worden.org


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d3d83ada307b891273865a91b5f52da66dffd620
1055511438
Mark R. Diggory
I am removing this file because the build.xml file is now generated by Maven and periodically updated when the project.xml file is updated. This file was used with the old build.xml file prior to our use of Maven to generate the build.xml.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140904 13f79535-47bb-0310-9956-ffa450edef68

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82791fcd676c96011f2387fbc14cbaf7a26658a9
1055510561
Mark R. Diggory
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=20633
Submitted by:	brent@worden.org


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0b1b9a9dc86da871ce5e7839b1b2df13c99dd9f8
1055343030
Timothy O'Brien
Submitted Javadoc fixes from Andreou Andreas


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1055330081
Mark R. Diggory
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=20627
Submitted by:	brent@worden.org


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c18e59702f96f5cbe879e6375ba9f50726c20bb5
1055302385
Timothy O'Brien
* Fixed all checkstyle errors and eliminated redundant NaN checks.  Now have
100% test path coverage.

* Used distribution framework TDistribution to implement
getSlopeConfidenceInterval and getSignificance methods.

PR: Issue #20657
Obtained from: Bugzilla
Submitted by: Phil Steitz
Reviewed by: Tim O'Brien


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1055294359
Mark R. Diggory
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=20601
Submitted by:	brent@worden.org


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1054994274
Mark R. Diggory
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=20570
Submitted by:	brent@worden.org


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1054949817
Mark R. Diggory
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=20543
Submitted by:	phil@steitz.com


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ffaa0f35436b008ebfbe8edae1b8655b9e1c145f
1054870683
Mark R. Diggory
Resolved some href " issues in Javadoc.


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1054868859
Mark R. Diggory
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=20496
Submitted by:	Albert Davidson Chou


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1054838124
Mark R. Diggory
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=20514
Submitted by:	brent@worden.org


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71a032b1f8dbf1e772932854317cccd6a4f29400
1054822243
Mark R. Diggory
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=20507
Submitted by:	Phil Steitz


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140893 13f79535-47bb-0310-9956-ffa450edef68

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1054821833
Mark R. Diggory
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=20488
Submitted by:	Brent Worden

Initial submission of the distribution library


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80e42b33c52fe0ce94a9be00d31989e269ff15ea
1054783461
Mark R. Diggory
Adding Al as a contributor


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0346c5f06a6f9abc6c787983b9167f7134258d04
1054730894
Mark R. Diggory
just changing my email address...


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98f8ce531382da0f79edcdbdbff36d7a61e3e9e3
1054730594
Mark R. Diggory
typo in the ${basedir} variable.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140889 13f79535-47bb-0310-9956-ffa450edef68

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905febc1b00b333b90acdd3df61e96856330711c
1054729424
Mark R. Diggory
fixed href link to have ""'s


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b7b2adee87f8b546275ba653abbc65671dccd76c
1054699539
Mark R. Diggory
Improved Variance calculation, test for negative variance and added some more javadoc.


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1054699435
Mark R. Diggory
Adjusted the code to be able to control the files used and the tolerance for each file (important, hard tests currently require lower tolerance to pass).


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290af7e332cae0d450b54130127345df2cc32b0a
1054694749
Mark R. Diggory
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=20442
Submitted by:	Phil Steitz


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1054694426
Mark R. Diggory
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=20404
Submitted by:	Phil Steitz


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1054693874
Mark R. Diggory
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=20390
Submitted by:	Phil Steitz


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1054693491
Mark R. Diggory
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=20377
Submitted by:	Phil Steitz


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1054693037
Mark R. Diggory
PR: http://nagoya.apache.org/bugzilla/show_bug.cgi?id=20375
Submitted by:	Albert Davidson Chou


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7ea04dbcd754844c9aa6ff43de1b589eef068a81
1054531266
Mark R. Diggory
Changing the name of data files, the default javac target in the ant file misses files of the extension "dat"


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140880 13f79535-47bb-0310-9956-ffa450edef68

7ea04dbcd754844c9aa6ff43de1b589eef068a81
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768b12187cb9423c0eee3b8d15fbd71682755e0b
1054529913
Mark R. Diggory
Commenting out testUnivariateImpl unitl I figure out why this fails in UnivariateImpl


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140879 13f79535-47bb-0310-9956-ffa450edef68

768b12187cb9423c0eee3b8d15fbd71682755e0b
:100644 100644 60f0c8d156f10e23051701f26a775a7de1503386 2148c3ab52c80890089422f6893ab5707ffcae62 M	src/test/org/apache/commons/math/stat/CertifiedDataTest.java

05de8c3e425adff8b9bf55268868021d37369fb4
1054529301
Mark R. Diggory
project.xml had two dependencies sections, I removed the empty one.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140878 13f79535-47bb-0310-9956-ffa450edef68

05de8c3e425adff8b9bf55268868021d37369fb4
:100644 100644 89254eeb694be999762f16cba741a09e3cca3c86 992c0985ed674efa30ca90aae504565d77b13707 M	project.xml

e67b032a0d4a8a4dfd0ccb48e5f8f85396238f9f
1054528046
Mark R. Diggory
Removed System.out's


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140877 13f79535-47bb-0310-9956-ffa450edef68

e67b032a0d4a8a4dfd0ccb48e5f8f85396238f9f
:100644 100644 aced88212b0e052e481869bfa39b3abe103cb634 60f0c8d156f10e23051701f26a775a7de1503386 M	src/test/org/apache/commons/math/stat/CertifiedDataTest.java

423d4ac4d1b4fdc4c58de6198e2e688135f6fbde
1054527952
Mark R. Diggory
Initial Certified Tests for Univariate. Note UnivariateImpl currently fails


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140876 13f79535-47bb-0310-9956-ffa450edef68

423d4ac4d1b4fdc4c58de6198e2e688135f6fbde
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8075f3b25808cb72d55414e65c1766206e23ce70
1054525453
Timothy O'Brien
Licensing issues have prompted the removal of all source reliant on
Gamma.java.  Gamma.java explicitly stated that it was "based on" an
implementation from Numerical Recipes in C.  Please see
http://www.nr.com/infotop.html - these implementations (and derivatives
of these works) are covered under restrictive licensing terms.  This
code will be removed from the repository until these issues can be
addressed.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140875 13f79535-47bb-0310-9956-ffa450edef68

8075f3b25808cb72d55414e65c1766206e23ce70
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:100644 000000 8d40b16dbfaf2330dec04d95897c3c873cd8228e 0000000000000000000000000000000000000000 D	src/java/org/apache/commons/math/distribution/DistributionFactory.java
:100644 000000 c265205eed0307866cc0cfe3ac84646d5514d481 0000000000000000000000000000000000000000 D	src/java/org/apache/commons/math/distribution/DistributionFactoryImpl.java
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1cd797464f5f042dd10894b147dbf5671425c83e
1054521243
Mark R. Diggory
This is the new build.xml file generated by Maven. This was generated using the latest checkout of Maven.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140874 13f79535-47bb-0310-9956-ffa450edef68

1cd797464f5f042dd10894b147dbf5671425c83e
:100644 100644 47dc4e0bfbed10a85a6d154a8524a9b0d8d9e3d5 b540b1887592dc0747fcf79cd9d03fa49f8ee25d M	build.xml

0a08e1e825ff9e871c5092f37b48683a285977d2
1054482220
Mark R. Diggory
Adding myself to the developers


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140873 13f79535-47bb-0310-9956-ffa450edef68

0a08e1e825ff9e871c5092f37b48683a285977d2
:100644 100644 845eb2749a4072b3547feb063d84113a1ee90cfa 89254eeb694be999762f16cba741a09e3cca3c86 M	project.xml

5ac170d0273fdb6a840d53c4e8214503524a1c6c
1054309228
Timothy O'Brien
* add the numerical analysis and prob/stat references that have been posted or
  included in javadoc recently, plus a few more generic references.
* update the task list based on accomplishments and discussion

PR: Issue 20357
Obtained from: Bugzilla
Submitted by: Phil Steitz
Reviewed by: Tim O'Brien


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140872 13f79535-47bb-0310-9956-ffa450edef68

5ac170d0273fdb6a840d53c4e8214503524a1c6c
:100644 100644 cd2a237636bfbeaa3f0bbb7d642e2ccbf7623a21 845eb2749a4072b3547feb063d84113a1ee90cfa M	project.xml
:100644 100644 af3119c58f62e4e706b435b10429b6a0b572cca7 e0ff15558ce9dbd948a96bbcc6ec33df3fe869b1 M	xdocs/developers.xml
:100644 100644 8312576708bfbbae239b3c975c899de412109ff8 becd8b98027680d0e67434cb352ad75fd5c41ff6 M	xdocs/tasks.xml

9711fe60bec4fc2b6a0ee17a764f5a6d2c59ae6f
1054251048
Timothy O'Brien
Removed tasklist report, until this has content, no reason for the added distraction


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140871 13f79535-47bb-0310-9956-ffa450edef68

9711fe60bec4fc2b6a0ee17a764f5a6d2c59ae6f
:100644 100644 b0c44db6701c1e5ba9e357528431743a09d39d94 cd2a237636bfbeaa3f0bbb7d642e2ccbf7623a21 M	project.xml

b6261a198b58742cd5c6511c5a3dc8e5f99a6ffa
1054250784
Timothy O'Brien
linkcheck report was throwing 404s for every URL, I've removed it until someone can generate a meaningful report


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140870 13f79535-47bb-0310-9956-ffa450edef68

b6261a198b58742cd5c6511c5a3dc8e5f99a6ffa
:100644 100644 3da2adfdce062d21e334b14617683ba4c53b91b1 62aa35a832499ac2078e06834ee8ee8bb34f0d8e M	project.properties
:100644 100644 9eeb99cb4818a36d2b309498c0e8fea504c88422 b0c44db6701c1e5ba9e357528431743a09d39d94 M	project.xml

09e576a78d1a7e8b83c872769fddb83d907e4c7e
1054250712
Timothy O'Brien
Removed old Univariate tests


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140869 13f79535-47bb-0310-9956-ffa450edef68

09e576a78d1a7e8b83c872769fddb83d907e4c7e
:100644 000000 3d38c3665c71fc779c30e9c63144bd1ee1ec6d82 0000000000000000000000000000000000000000 D	src/test/org/apache/commons/math/BeanListUnivariateImplTest.java
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1bf873eabf8f6683d018b99c0ec48db7f0e0912d
1054250700
Timothy O'Brien
Checkstyle should check that each source file include a license


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140868 13f79535-47bb-0310-9956-ffa450edef68

1bf873eabf8f6683d018b99c0ec48db7f0e0912d
:100644 100644 20e58dd44648b7b98d389289a4c3b5213df836c8 d2bfc59bc4f666b0aa7b576c700ed97b8521c9ca M	checkstyle.properties

fe69714916c8b0d9842c6f1ee07bef75aa64f5cd
1054240546
Timothy O'Brien
Moved all Univariate and Bivariate stats interfaces and classes to the math.stat package


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140867 13f79535-47bb-0310-9956-ffa450edef68

fe69714916c8b0d9842c6f1ee07bef75aa64f5cd
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d79f686403d6779e30635649c15f5646423c2b2d
1054237758
Timothy O'Brien
Patch adds getSkewness and getKurtosis to Univariate and an implimentation
in UnivariateImpl. It also adds test for NaN and 0.0 to UnivariateImplTest

PR: Issue 20250
Obtained from: Bugzilla
Submitted by: Mark Diggory
Reviewed by: Tim O'Brien


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140866 13f79535-47bb-0310-9956-ffa450edef68

d79f686403d6779e30635649c15f5646423c2b2d
:100644 100644 0431518af7ee48caac5293318ced5e5108f71a0d 0dae4210e027915c2cfe455f3438b4e6a65ee598 M	src/java/org/apache/commons/math/Univariate.java
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:100644 100644 191185f7c50d28ce416b83dbd4385bacbfe68562 d0a8884e593ee7772467d77dec133a74c8bb6a56 M	src/test/org/apache/commons/math/UnivariateImplTest.java

c0f9beb4b02f2dcc7ca9276d8824bb482cb6dede
1054237535
Timothy O'Brien
Adds the following two capabilities to RandomData: Generating random permutations
of integers, Generating random samples (returned as Object arrays) from Collections.
Tests validate expected sample distribtution using chi-square tests

PR: Issue 20303
Obtained from: Bugzilla
Submitted by: Phil Steitz
Reviewed by: Tim O'Brien


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140865 13f79535-47bb-0310-9956-ffa450edef68

c0f9beb4b02f2dcc7ca9276d8824bb482cb6dede
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:100644 100644 2692dec096f19c5a93152cfb37d7c776bc65880c 6796517c3ad96056c50f0b8d93ac177a19bad2b9 M	src/test/org/apache/commons/math/RandomDataTest.java

98b247ad029f225ba893d3a4b193d2185e8def66
1054237312
Timothy O'Brien
Added an LICENSE.txt in commons-math


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140864 13f79535-47bb-0310-9956-ffa450edef68

98b247ad029f225ba893d3a4b193d2185e8def66
:000000 100644 0000000000000000000000000000000000000000 202d60b26bdedf2873563738cd10eee34646afe7 A	LICENSE.txt

bdd3debba8dd297a70f10e053c1a1960f415a4d2
1054237292
Timothy O'Brien
Addition of a BeanListUnivariateImpl which can gather univariate statistics on a
List of JavaBeans.  This implementation extends the ListUnivariateImpl, and uses the
PropertyUtils classes from commons-beanutils.  With this implementation, the following
is possible:

List persons = new ArrayList();
// populate array with 100 persons
Univariate ageU = new BeanListUnivariateImpl( persons, "age" );
Univariate incomeU = new BeanListUnivariateImpl( persons, "jobInfo.income" );
System.out.println( "Mean age is: " + ageU.getMean() );
System.out.println( "Mean income is: " + incomeU.getMean() );

Better error handling is needed near our use of PropertyUtils.

This patch introduces a dependency on commons-beanutils, which in turn depends
on commons-collections and commons-logging.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140863 13f79535-47bb-0310-9956-ffa450edef68

bdd3debba8dd297a70f10e053c1a1960f415a4d2
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3933151a2e3d3dd146fd9e14c5e8cb8a6adbb96b
1054236956
Timothy O'Brien
Unit tests for previous commit - from Brent Worden's submission in Bugzilla Issue 20279


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140862 13f79535-47bb-0310-9956-ffa450edef68

3933151a2e3d3dd146fd9e14c5e8cb8a6adbb96b
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339b99a8bc28f8032df22cd29750d218f3f321e7
1054236878
Timothy O'Brien
Contributions from Brent Worden - Bugzilla Issue 20279

* a distribution factory following the abstract factory pattern.
The value being, if users want to swap out the default distribution
implementations with their own, why stop them.  The factory is responsible for
create the distribution instances (only continuous ones for now).

* Each distribution has a cummulativeProbabilty method which returns the value of
the CDF for a given value.  By default, via the abstract distribution base
class, an inverseCummulativeProbability method is all provided for all
distributions.  It's implementation is generically handled by applying root
finding techniques to the cummulativeProbability method.  That way, when new
distributions are added, authors only need to create the CDF method and the
inverse is provided automatically.

* Currenty, the only distributions are Chi-Squared and Gamma (one actually since
Chi-Squared is a specialized Gamma) but more are planned.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140861 13f79535-47bb-0310-9956-ffa450edef68

339b99a8bc28f8032df22cd29750d218f3f321e7
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2782a2d0f5bea80bb0c58a7209df8d051348fcd5
1053970820
Timothy O'Brien
Fixed spelling of INFINITE_WINDOW.

PR: 20234
Submitted by: Al Chou


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140860 13f79535-47bb-0310-9956-ffa450edef68

2782a2d0f5bea80bb0c58a7209df8d051348fcd5
:100644 100644 9d101c778b1dea796211626702c25b074516e884 13acdb74e39b630cd56bf0f4f4e6bc951a438000 M	src/java/org/apache/commons/math/ListUnivariateImpl.java
:100644 100644 21a60e74bc05bdb64097567f3abf6cfbb15a32e0 49a5878a1c1475663fadcdf27d8beed2994db3d8 M	src/java/org/apache/commons/math/StoreUnivariateImpl.java
:100644 100644 76107d8fedee381222e38afb0366051831b0026a 0431518af7ee48caac5293318ced5e5108f71a0d M	src/java/org/apache/commons/math/Univariate.java
:100644 100644 d3402fd590fdedac1e52577d2bc3ad7ec23c7fc0 ac90a0c8cfac95313368ba4c3c55df4dc46736e9 M	src/java/org/apache/commons/math/UnivariateImpl.java

9c3353db4b98821cdab70821a3aa648d5e2a2cbb
1053970176
Timothy O'Brien
Adds the one sample, t-test statistic to TestStatistic and implementations.
Also add unit tests. - BW

PR: Issue #20231
Obtained from: Bugzilla
Submitted by: Brent Worden
Reviewed by: Tim O'Brien


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140859 13f79535-47bb-0310-9956-ffa450edef68

9c3353db4b98821cdab70821a3aa648d5e2a2cbb
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:100644 100644 65ff0765dd45c2cdb21898b03a2316d2913b0833 10970bd42f4db0b890c78fb9da0f80e2ccfbc159 M	src/test/org/apache/commons/math/TestStatisticTest.java

4ce4db7bdfc7ef81c9af96acedf987ef90600031
1053915110
Timothy O'Brien
An implementation of ordinary least squares regression with one independent
variable. The implementation uses running sums and does not require the data
to be stored in memory.  Since I could not conceive of any significantly
different implementation strategies that did not amount to just improving
efficiency or numerical accuracy of what I am submitting, I did not abstract
the interface.

The test cases validate the computations against NIST reference data and
verified computations. The slope, intercept, their standard errors and
r-square estimates are accurate to within 10E-12 against the reference data
set.  MSE and other ANOVA stats are good at least to within 10E-8. -- Phil S.

PR: Issue #20224
Obtained from: Bugzilla
Submitted by: Phil Steitz
Reviewed by: Tim O'Brien


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140858 13f79535-47bb-0310-9956-ffa450edef68

4ce4db7bdfc7ef81c9af96acedf987ef90600031
:000000 100644 0000000000000000000000000000000000000000 5ceb1b9c676802c38a20dfd597804012d27c18bf A	src/java/org/apache/commons/math/BivariateRegression.java
:000000 100644 0000000000000000000000000000000000000000 4d6d37faf38ed30e46f8140a25b6516ea25ccc04 A	src/test/org/apache/commons/math/BivariateRegressionTest.java

c5b978ce23cde57e215327b391e0cc94a6714a06
1053711198
Timothy O'Brien
From Phil Steitz patch submission for Issue #20175

The attached patch includes the following improvements to Univariate and
UnivariateImpl:

* Improved efficiency of min, max and product maintenance when windowSize is
  limited by incorporating suggestion posted to commons-dev by Brend Worden
  (added author credit).  Thanks, Brent!

* Added javadoc specifying NaN contracts for all statistics, definitions for
  geometric and arithmetic means.

* Made some slight modifications to UnivariateImpl to make it consistent with
  NaN contracts

* All interface documentation moved to Univariate. The interface specification
  includes the NaN semantics and a first attempt at clealy defining exactly
  what "rolling" means and how this effects what statistics are defined when.

* Added test cases to verify that min, max, product are correctly maintained
  when "rolling" and to verify that NaN contracts are satisfied.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140857 13f79535-47bb-0310-9956-ffa450edef68

c5b978ce23cde57e215327b391e0cc94a6714a06
:100644 100644 a1eee7b74ea6dd0c8d62ffd83e237f860f59009c bb4b9e056d90007195b69b8f24162b2637c3a40f M	project.xml
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32f700b74ab8bd04196c4951849e2e485c52f65c
1053707296
Timothy O'Brien
Readded the linkcheck and tasklist reports


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140856 13f79535-47bb-0310-9956-ffa450edef68

32f700b74ab8bd04196c4951849e2e485c52f65c
:100644 100644 f73d297fc55dbce785f0325d439e8e673ad8fce0 a1eee7b74ea6dd0c8d62ffd83e237f860f59009c M	project.xml

53dd60d86146dd40c4b3e291158ac09d3cc514a8
1053622522
Timothy O'Brien
Added mdiggory patch for developer resources


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140855 13f79535-47bb-0310-9956-ffa450edef68

53dd60d86146dd40c4b3e291158ac09d3cc514a8
:100644 100644 02d4018b64b465296ddd87a18fb0447146304de7 af3119c58f62e4e706b435b10429b6a0b572cca7 M	xdocs/developers.xml

0ca5e952c92699c98a7ad0380be7b3c197d3f55c
1053617498
Timothy O'Brien
RandomDataTest.testNextGaussian() was using Univarite.getN().  Added
an explicit cast from int to double.  Test now succeeds.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140854 13f79535-47bb-0310-9956-ffa450edef68

0ca5e952c92699c98a7ad0380be7b3c197d3f55c
:100644 100644 a4864741ebcb9cc550989f611ff778e7ea25307b 2692dec096f19c5a93152cfb37d7c776bc65880c M	src/test/org/apache/commons/math/RandomDataTest.java

eb833abd95ea3bdaaac8224cb985b4587742eec0
1053616772
Timothy O'Brien
The EmpiricalDistributionImpl that submitted yesterday assumed the "old"
Univariate interface, in which getN() returned a double.  The attached patch
inserts the necessary casts to avoid the rounding/truncation errors that were
causing the EmpiricalDistribution and ValueServer unit tests to fail.

The patch also adds a RandomData member variable so that getNext() does not
instantiate a new RandomData instance for each activation

PR: Bugzilla #20149
Obtained from: Issue Patch
Submitted by: Phil Steitz
Reviewed by: Tim O'Brien


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140853 13f79535-47bb-0310-9956-ffa450edef68

eb833abd95ea3bdaaac8224cb985b4587742eec0
:100644 100644 57d429afee3a22f31d6086b994536c117766f152 5a088b8e6d797350b71e421e4ddd629730f70383 M	src/java/org/apache/commons/math/EmpiricalDistributionImpl.java

4986461cb140eab887bb723436cff39ae25105f9
1053541486
Timothy O'Brien
Added task to bring javadoc into compliance with standard.  Javadoc
generate currently throws 35 errors.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140852 13f79535-47bb-0310-9956-ffa450edef68

4986461cb140eab887bb723436cff39ae25105f9
:100644 100644 5e646333eec29a680f55fc348e63ad13719a2a0d 8312576708bfbbae239b3c975c899de412109ff8 M	xdocs/tasks.xml

d275862aeb58c45429c55f8d444b7ffbc581a308
1053539960
Timothy O'Brien
Added Product and Mean to Univariate and all implementations, this patch
contains contributions from Mark Diggory.

* This patch introduces Product and GeometricMean into the Univariate
implementation.

* Discarding the contribution of a discarded element in a rolling
UnivariateImpl requires that the product be calculated explicitly each
time a value is discarded.  This is necessary because not all values will
have non-zero values.

* Errors in rolling logic for ListUimpl, and UnivariateImpl were corrected,
and more test cases were added to the JUnit tests for the Univariate
implementations.  More rigorous test cases are needed for the entire
suite of Univariate implementations


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140851 13f79535-47bb-0310-9956-ffa450edef68

d275862aeb58c45429c55f8d444b7ffbc581a308
:100644 100644 9d0bf57c1808e784a8f0a248ecb8271aa600f4cf 4ec611df15a0dd09e931a2d26a46a889376d3897 M	src/java/org/apache/commons/math/AbstractStoreUnivariate.java
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:100644 100644 a74ca79b639c9468cb5dc9c3ca1c747602248ed5 394f8bad29a3eda7667215ddeb35ccd269a23e01 M	src/test/org/apache/commons/math/StoreUnivariateImplTest.java
:100644 100644 4cae7f739bc68dc499d609a465e1bd5d16ca11e6 ef589ad0f17442e2b755505251b1951838e57c90 M	src/test/org/apache/commons/math/UnivariateImplTest.java
:100644 100644 046dfe3d73d348236c444508f8b5638c278206e7 c1d9d4a309f94567fc73bd64fd6e3d30c71c2866 M	src/test/org/apache/commons/math/ValueServerTest.java

43892e35b043abda0920ae18e57d6b1388bf1d68
1053529914
Timothy O'Brien
xdoc tasks.xml was updated to reflect tasks pertaining to the next planned
release.  There tasks were lifted from Phil S. earlier message to
commons-dev@


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140850 13f79535-47bb-0310-9956-ffa450edef68

43892e35b043abda0920ae18e57d6b1388bf1d68
:100644 100644 b156a9acb6d27c124fb531c2d7798514fdbaba41 5e646333eec29a680f55fc348e63ad13719a2a0d M	xdocs/tasks.xml

d45344aa0e21a93b1fd0be5f4dccf89d3b66c0c8
1053529851
Timothy O'Brien
project.properties changes.  1. The build will not fail on a failed
unit test, 2. The date/time and version are included in the xdoc
transformation, 3. JUnit is now forker, and 4. We use checkstyle.properties
to customize the behavior of Checkstyle.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140849 13f79535-47bb-0310-9956-ffa450edef68

d45344aa0e21a93b1fd0be5f4dccf89d3b66c0c8
:000000 100644 0000000000000000000000000000000000000000 20e58dd44648b7b98d389289a4c3b5213df836c8 A	checkstyle.properties
:000000 100644 0000000000000000000000000000000000000000 3da2adfdce062d21e334b14617683ba4c53b91b1 A	project.properties

725eff7db400661631416be3d58bb2758a793b7a
1053526875
Timothy O'Brien
Commited patch for issue 20112 from Phil Steitz.

EmpiricalDistribution -- represents an empirical probability distribution and
supports generation of data values that are "like" values in an input file
without making any assumptions about the functional form of the probability
distribution that the data come from.   This is useful in simulation
applications where historical data about component performance are
available but do not follow standard distributions (or any application that
requires random data generation from an empirical distribution). Also
generates data for grouped frequency histograms based on the input file.

ValueServer -- a wrapper for RandomData and EmpiricalDistribution that
generates values in each of the following modes:
  * DIGEST_MODE -- uses an empirical distribution
  * REPLAY_MODE -- replays data from an input file
  * UNIFORM_MODE -- generates uniformly distributed random values
  * EXPONENTIAL_MODE -- generates exponentially distributed random
                        values
  * GAUSSIAN_MODE -- generates Gaussian distributed random values
  * CONSTANT_MODE -- returns the same value every time.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140848 13f79535-47bb-0310-9956-ffa450edef68

725eff7db400661631416be3d58bb2758a793b7a
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8b62ed457040b6a1b4562aa0d0df88e1e77bddce
1053499586
Timothy O'Brien
Updated class javadoc for ContractableDoubleArray


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140847 13f79535-47bb-0310-9956-ffa450edef68

8b62ed457040b6a1b4562aa0d0df88e1e77bddce
:100644 100644 ecf67de3f23ed060751bdbd8d0ca3b6f9ed797ba 4f1c0e24ac8ac1c7f99772addd49edd6eb61184c M	src/java/org/apache/commons/math/ContractableDoubleArray.java

e1136b7e12d186c5086bb86b21e43b8703a0de94
1053498270
Timothy O'Brien
Added more substantial class javadoc to ExpandableDoubleArray


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140846 13f79535-47bb-0310-9956-ffa450edef68

e1136b7e12d186c5086bb86b21e43b8703a0de94
:100644 100644 014a87dcee7f4c4efb182da7d50e0ef9e1bf8295 9db06dcf1ad859a22d8627a4a60497707d4ef221 M	src/java/org/apache/commons/math/ExpandableDoubleArray.java

ebeb2dcab4e429a967f61401e6e9c755a19cf6e1
1053496105
Timothy O'Brien
Added javadoc to FixedDA and altered exceptions in DoubleArray

* One should be able to use a DoubleArray in a similar way to a
regular double[], to this effect methods for accessing element
values will no longer throw NoSuchElementExceptions when an
index is outside of the element set.  These method all throw
ArrayIndexOutOfBoundException if a bad index is supplied.

* Filled out javadoc in FixedDoubleArray.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140845 13f79535-47bb-0310-9956-ffa450edef68

ebeb2dcab4e429a967f61401e6e9c755a19cf6e1
:100644 100644 abf6d43b541e59eb4d0be08a4aedc65d832d3369 5d129238b530b1337deebb80b409e9d061720d31 M	src/java/org/apache/commons/math/DoubleArray.java
:100644 100644 d13342a959671462e7267352d137987b6ce0d805 014a87dcee7f4c4efb182da7d50e0ef9e1bf8295 M	src/java/org/apache/commons/math/ExpandableDoubleArray.java
:100644 100644 911a990266ffd20fa007b2861e07cd7af7bbd941 0c53b636a6174f3c6f2d0cad62c847d0db67ff07 M	src/java/org/apache/commons/math/FixedDoubleArray.java

2f20f8d2b3f14d81aac604803d71bf7850db27a8
1053460498
Robert Burrell Donkin
Corrected upload directory.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140844 13f79535-47bb-0310-9956-ffa450edef68

2f20f8d2b3f14d81aac604803d71bf7850db27a8
:100644 100644 69b26b7f529b2391df7aee4c850c4d80d63ad8ca 9b126549cb893734dd40ff62b672ad82ed0e00e5 M	project.xml

cc3b4cac2bb748b52e79099523814f771be78e9c
1053454529
Timothy O'Brien
Updated source code to reflect Jakarta source code guidelines specifically
tab characters.  Changes were driven by Checkstyle report on
http://jakarta.apache.org/commons/sandbox/math


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140843 13f79535-47bb-0310-9956-ffa450edef68

cc3b4cac2bb748b52e79099523814f771be78e9c
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:100644 100644 5fa82babbce2f6881048cf642e9c831af918486f ecf67de3f23ed060751bdbd8d0ca3b6f9ed797ba M	src/java/org/apache/commons/math/ContractableDoubleArray.java
:100644 100644 c4ff914046ee2981c818b99906ab5255ad10d402 abf6d43b541e59eb4d0be08a4aedc65d832d3369 M	src/java/org/apache/commons/math/DoubleArray.java
:100644 100644 5cd6336f7bb2ea47da1d5c0912da77396b8f1bb5 d13342a959671462e7267352d137987b6ce0d805 M	src/java/org/apache/commons/math/ExpandableDoubleArray.java
:100644 100644 494c3af8a0ca80ecc23d4854e9700d97f5cafaf9 911a990266ffd20fa007b2861e07cd7af7bbd941 M	src/java/org/apache/commons/math/FixedDoubleArray.java
:100644 100644 eb3cc0a0f6170d82ebd333edda240d82a9359491 e7df32f1c43e870e91e6f76951ab449825fb779a M	src/java/org/apache/commons/math/ListUnivariateImpl.java
:100644 100644 41f93d56f8031679aba1ae9d634f49a791531831 df80de0d306c4b6bfa9ac6274babdc64c46052ca M	src/java/org/apache/commons/math/StoreUnivariate.java
:100644 100644 5d5729e9c2eaffd75f4a96e9789bbe2b7d520639 d790084058bafbddae3d0ce6c7d1d293360a6f6a M	src/java/org/apache/commons/math/StoreUnivariateImpl.java
:100644 100644 4afa658fb3892163849f88939e35a80b4a38af61 734d93f22271bb2d8caa80ebfb92e670c6da7dd4 M	src/java/org/apache/commons/math/Univariate.java
:100644 100644 b785a3f04124bb3020d346899c9848654b3459f3 3f9d77c73aa5c6548af9ff77b2aefb6e7077228c M	src/java/org/apache/commons/math/UnivariateImpl.java

e0f88d35af39735cabdf488da3b11bf746d69e4c
1053437090
Timothy O'Brien
Added Mark Diggory as a contributor


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140842 13f79535-47bb-0310-9956-ffa450edef68

e0f88d35af39735cabdf488da3b11bf746d69e4c
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cbdcc2412b2118ec38490ec2266624e2aefee949
1053426477
Robert Burrell Donkin
Created outline user guide This will be built using maven. Lots more content needed.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140841 13f79535-47bb-0310-9956-ffa450edef68

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:000000 100644 0000000000000000000000000000000000000000 7d48bf8cd9f77b2336e223edd2fa14ab90c8266a A	xdocs/userguide/overview.xml

726eab50aaff0d508ec6eb9a1bf5953ca4ddb6eb
1053426446
Robert Burrell Donkin
Created outline documentation. This will be built using maven. Lots more content needed.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140840 13f79535-47bb-0310-9956-ffa450edef68

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:000000 100644 0000000000000000000000000000000000000000 02d4018b64b465296ddd87a18fb0447146304de7 A	xdocs/developers.xml
:000000 100644 0000000000000000000000000000000000000000 2b0f9889f9ac0ffb8bc8afe7f4329eccd92c8362 A	xdocs/index.xml
:000000 100644 0000000000000000000000000000000000000000 8c1c72b6d92409200024b67f127cf6ed6be96edb A	xdocs/navigation.xml
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45b69259eb53e1599f3bcdb095d81c41d0074d04
1053426272
Robert Burrell Donkin
Mavenization phase one - moving documentation build to maven, will complete by generating build.xml etc later.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140839 13f79535-47bb-0310-9956-ffa450edef68

45b69259eb53e1599f3bcdb095d81c41d0074d04
:100644 100644 6e11cfc0dc718da7a923914d5829900e2e120ae4 3b9a403c4ce43d66a5e6dae4221e9843739e569e M	.cvsignore
:100644 100644 68ab0697c709be4f8f93ab7511cd22ccda5f0175 819027b0543fb91950c4e07f45ac096ffcebe6ca M	project.xml
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e30f62314b487158b4ba77e8379cd4f2cd4c77a9
1053219532
Timothy O'Brien
Phil Steitz wrote:

This commit contains the suite of random data generation utilities that
I originally
proposed as extensions to lang.math.  There is some functional overlap
with lang.math, but the contract and intention of this implementation is
different in several significant ways.

* the lang implementation maintains "immutability" of the underlying
   random number generator (emulating Math). The RandomData
   implementation allows users to reseed the random number generator(s)
   (this is in effect possible in the recent extensions to lang.math by
   passing in a user-supplied random as an actual parameter to the
   next() methods) Users can also reset the PRNG algorithm and provider
   used by the "secure" methods.

* RandomData includes "secure" methods (delegating to SecureRandom)

* RandomData will generate random deviates from exponential and poisson,
   as well as Gaussian and Uniform distributions.  These are useful in
   simulation applications.

* Overlapping somewhat with lang.StringUtils, RandomData will generate
   random hex strings.  There is a nextSecureHexString method that will
   (I claim :-) generate cryptographically secure string identifiers. I
   would appreciate feedback on this algorithm, which I have seen used
   elsewhere (similar to what tomcat does to generate session ids); but
   not documented as a standard.

PR: Bugzilla 20013
Obtained from: Phil S.
Submitted by: Phil S.
Reviewed by: Tim O.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140838 13f79535-47bb-0310-9956-ffa450edef68

e30f62314b487158b4ba77e8379cd4f2cd4c77a9
:000000 100644 0000000000000000000000000000000000000000 3cff2b63e76f395d5ad9726a40604c5d21d21d4d A	src/java/org/apache/commons/math/RandomData.java
:000000 100644 0000000000000000000000000000000000000000 eeec29d3c1a8c6467ebf845cb90161b7b78e1921 A	src/java/org/apache/commons/math/RandomDataImpl.java
:100644 100644 2a6e57b0de35c2d4a09ead3822771d1657f6a5fe 200c0477886cf9b02df511f19a3eb225a22cef6a M	src/test/org/apache/commons/math/MathTestSuite.java
:000000 100644 0000000000000000000000000000000000000000 a4864741ebcb9cc550989f611ff778e7ea25307b A	src/test/org/apache/commons/math/RandomDataTest.java

3ec57d975f86d4ee8d9fdec437650e49642cc83a
1053219318
Timothy O'Brien
Altered the build script to use batch test instead of running
a suite.  The advantage of this is that when new tests are added to the
project a TestSuite class does not need to updated.

All classes *Test.java are included, and *AbstractTest.java are excluded.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140837 13f79535-47bb-0310-9956-ffa450edef68

3ec57d975f86d4ee8d9fdec437650e49642cc83a
:100644 100644 a46a980f5eee2ddf7c749d1d2589c1561e287151 47dc4e0bfbed10a85a6d154a8524a9b0d8d9e3d5 M	build.xml

2bbad8ecca1a9b52c20dadcff06f30682a77a738
1053213861
Timothy O'Brien
Added a FixedDoubleArray.  FixedDoubleArray supports a rolling mechanism
that reuses an array of fixed length.  This classes was added to an efficient
rolling mechanism.

FixedDoubleArray was influenced by discussions on the commons-dev list and
patches submitted by Mark Diggory.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140836 13f79535-47bb-0310-9956-ffa450edef68

2bbad8ecca1a9b52c20dadcff06f30682a77a738
:100644 100644 57f2c99a547aab56e1dc70e91babd8e56b4038e2 68ab0697c709be4f8f93ab7511cd22ccda5f0175 M	project.xml
:100644 100644 b0ff88156533e47059ce8fa4740830eee02d5f69 5cd6336f7bb2ea47da1d5c0912da77396b8f1bb5 M	src/java/org/apache/commons/math/ExpandableDoubleArray.java
:000000 100644 0000000000000000000000000000000000000000 494c3af8a0ca80ecc23d4854e9700d97f5cafaf9 A	src/java/org/apache/commons/math/FixedDoubleArray.java
:100644 100644 50798cd93f2310efdec41506879e7e66d150463f b785a3f04124bb3020d346899c9848654b3459f3 M	src/java/org/apache/commons/math/UnivariateImpl.java
:100644 100644 5f59e490da7cf713059400f2defc7c267382166e 4db456890a06a4ddb90f04bd2f1860a76a1ebdaa M	src/test/org/apache/commons/math/ContractableDoubleArrayTest.java
:100644 100644 11f34f5f95aaf35f1344ebe14a678256047337f5 206d4b59c3fa33ba1b785212b054e66a45079b29 M	src/test/org/apache/commons/math/DoubleArrayAbstractTest.java
:100644 100644 e5ef1943386119d55ad0d050c38eb20fcdf51211 680933c36d3172d0d162e821130493c1786bf213 M	src/test/org/apache/commons/math/ExpandableDoubleArrayTest.java
:000000 100644 0000000000000000000000000000000000000000 6fa21fe9f03476e093e62a0449c7ca8e9407189c A	src/test/org/apache/commons/math/FixedDoubleArrayTest.java

8db7e1bd75cceeb37255414b79e7bb892818af03
1053062609
Timothy O'Brien
The Univariate interface now contains getWindow and setWindow in
addition to a constant which signifies an "infinite" window.  Windowing
has been added to all three Univariate implementations:

* UnivariateImpl - If the window is not infinite, we keep track of
0..n elements and discount the contribution of the discarded element when
our "window" is moved.  If the window is infinite no extra storage is used
beyond an empty ContractableDoubleArray.

- In the following two implementations, the window size can be changed at anytime.

* ListStoreUnivariateImpl - If the window is not infinite, this
implementation only takes into account the last n elements of the List.

* StoreUnivariateImpl - Uses an internal ContractableDoubleArray, window size
can be changed at any time.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140835 13f79535-47bb-0310-9956-ffa450edef68

8db7e1bd75cceeb37255414b79e7bb892818af03
:100644 100644 a593789c810504b9db076219411a956bbe9b76b6 c4ff914046ee2981c818b99906ab5255ad10d402 M	src/java/org/apache/commons/math/DoubleArray.java
:100644 100644 89847c8dbdf41c56288e65283b801d402a613372 b0ff88156533e47059ce8fa4740830eee02d5f69 M	src/java/org/apache/commons/math/ExpandableDoubleArray.java
:100644 100644 825764c31fcc172cda792eab47cec0700b3bcd43 eb3cc0a0f6170d82ebd333edda240d82a9359491 M	src/java/org/apache/commons/math/ListUnivariateImpl.java
:100644 100644 a366ffbd2d60a8cf78075e13d53a7420e4013b96 5d5729e9c2eaffd75f4a96e9789bbe2b7d520639 M	src/java/org/apache/commons/math/StoreUnivariateImpl.java
:100644 100644 de6d948ed8c6dced7425ac3f14b32f1daa8bce49 4afa658fb3892163849f88939e35a80b4a38af61 M	src/java/org/apache/commons/math/Univariate.java
:100644 100644 71c94fb8d8ab4f991205434ac655313a198d6f6e 50798cd93f2310efdec41506879e7e66d150463f M	src/java/org/apache/commons/math/UnivariateImpl.java

b2fd0349771203ccfb14815f874300ade64644a7
1053058986
Timothy O'Brien
* DoubleArray is now an interface which is implemented by
ExpandableDoubleArray.  The interface provides a public interface
which does not hint at any of the storage parameters of
Expandable or Contractable.

* DoubleArrayTest now operates on the DoubleArray interface, casting
to Expandable when we need to call the package scopes getInternalLength
method.

* While we should not provide access to the internal storage array, it
should be possible to obtain a double[] of elements stored in this
DoubleArray - double[] getElements() was added to the DoubleArray interface,
it will return the element array.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140834 13f79535-47bb-0310-9956-ffa450edef68

b2fd0349771203ccfb14815f874300ade64644a7
:100644 100644 9832ec12a49f7cace8381ad1f5fe2bd4b7febf84 5fa82babbce2f6881048cf642e9c831af918486f M	src/java/org/apache/commons/math/ContractableDoubleArray.java
:000000 100644 0000000000000000000000000000000000000000 a593789c810504b9db076219411a956bbe9b76b6 A	src/java/org/apache/commons/math/DoubleArray.java
:100644 100644 f82dbb102c625a76e0c506e3d4adffa34c538f6f 89847c8dbdf41c56288e65283b801d402a613372 M	src/java/org/apache/commons/math/ExpandableDoubleArray.java
:100644 100644 5eff9cd0a8c607037e3c73b4d0f086b325c98617 5f59e490da7cf713059400f2defc7c267382166e M	src/test/org/apache/commons/math/ContractableDoubleArrayTest.java
:100644 100644 3e3c7c1d8543906908e765813295347f9a7b4bfc 11f34f5f95aaf35f1344ebe14a678256047337f5 M	src/test/org/apache/commons/math/DoubleArrayAbstractTest.java
:100644 100644 7fe2bac4a5ff33bba728c5baa9e22c6a6d6c0caf e5ef1943386119d55ad0d050c38eb20fcdf51211 M	src/test/org/apache/commons/math/ExpandableDoubleArrayTest.java

090bf703251d1bc3ecec7520ae6a8915a52fd720
1053057334
Timothy O'Brien
* ContractableDoubleArray extends ExpandableDoubleArray - I sense the
need for a DoubleArray interface.

* ExpandableDoubleArray and the extension ContractableDoubleArray should
aim towards presenting a public interface that does not expose any
details of the internal.  To this end, one is no longer able to get the
internal storage array via public double[] getValues(), and the startIndex
(which was relative to the internal storage array) is no longer available.

* [Expandable|Contractable]DoubleArray now allow one to discard
elements from the front of the array.  Before this commit, one could
accomplish the same goal by changing the starting index of the element
array within the internal storage array.  This solution allowed one to
discard elements from the front of the array (as well as) reclaiming
elements by decreases the startIndex.

There were two problems with this approach (especially in
ContractableDoubleArray).   The ContractableDoubleArray can be
"compacted" at anytime thereby reseting the startIndex to zero and the
size of the internal store array to number of elements plus one.  Second,
"reclaiming" elements from the internal storage array by finagling
internal "pointers" to the start and end index seems to violate the
principles of encapsulation.  If you "discard" an element from the
front of the array, consider it unavailable.

It should be noted that calling setNumElements allows one to move the end
index of the internal element array at will.  Assume one has a 100 element
array, and one calls setNumElements(10), thereby decreasing the ending index
of the element array by 90.  The 90 "dumped" elements are not currently
reinitializied to the default double primitive value.  This is an open
question.

* Tests for ExpandableDoubleArray and ContractableDoubleArray were
refactored.  both test classes now extend a DoubleArrayAbstractTest
JUnit class which contained shared unit tests for both "implementations".
An approach like this should be adopted to test the Univariate implementations.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140833 13f79535-47bb-0310-9956-ffa450edef68

090bf703251d1bc3ecec7520ae6a8915a52fd720
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:100644 100644 2e61bacc91ff114e60159240beee9d7340bb6df4 f82dbb102c625a76e0c506e3d4adffa34c538f6f M	src/java/org/apache/commons/math/ExpandableDoubleArray.java
:000000 100644 0000000000000000000000000000000000000000 5eff9cd0a8c607037e3c73b4d0f086b325c98617 A	src/test/org/apache/commons/math/ContractableDoubleArrayTest.java
:000000 100644 0000000000000000000000000000000000000000 3e3c7c1d8543906908e765813295347f9a7b4bfc A	src/test/org/apache/commons/math/DoubleArrayAbstractTest.java
:100644 100644 caad8c96f3c2ed0397b6e61ca6153cff63428ed7 7fe2bac4a5ff33bba728c5baa9e22c6a6d6c0caf M	src/test/org/apache/commons/math/ExpandableDoubleArrayTest.java
:100644 100644 f2f5675b8684c2944cd4237531675f576425ef6e 65ff0765dd45c2cdb21898b03a2316d2913b0833 M	src/test/org/apache/commons/math/TestStatisticTest.java

68ede2e3d32ac864f73aca729abe0d9e1b532364
1053035903
Timothy O'Brien
Patches from Phil S. applied:

* A TestStatistic interface with corresponding implementation and testcase

PR: Bugzilla 19971
Obtained from: Patches attached to issue
Submitted by: Phil S.
Reviewed by: Tim O/


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140832 13f79535-47bb-0310-9956-ffa450edef68

68ede2e3d32ac864f73aca729abe0d9e1b532364
:000000 100644 0000000000000000000000000000000000000000 1273f8b88becea9643a992fea8da60b5c199e6e3 A	src/java/org/apache/commons/math/TestStatistic.java
:000000 100644 0000000000000000000000000000000000000000 9eee0a24000114a7af8b6c532265c3335d182a2e A	src/java/org/apache/commons/math/TestStatisticImpl.java
:000000 100644 0000000000000000000000000000000000000000 f2f5675b8684c2944cd4237531675f576425ef6e A	src/test/org/apache/commons/math/TestStatisticTest.java

b2544b4f59bb5384ae35610df69d4fbcd2cc95cb
1053013128
Timothy O'Brien
Made a nubmer of change to the ExpandableDoubleArray.

* This class now supports
the ability to move the starting index of the internal element array.  This
allows one to move the beginning of the element array, and form a sort of
"window", this will come into play when we want to provide moving
averages, or "rolling".

* Added an addElementRolling(double v) - this will increment the startIndex
and add the element to the end of the internal element array

* brought the Clover test cases up to 100% for this class

Added a class ContractableDoubleArray:

* This is an extension of ExpandableDoubleArray - it addes a configuration
parameter contractionCriteria.  Essential if the contractionCriteria is
2.0f we commit to never having the internal storage array provide more
than 2.0 times the storage capacity needed.  Once the internal
storage array exceed this measurement, the internal storage array is
pruned to the size of the internal element array.

Also, my IDE scolded me for some ununsed imports in ListUnivariateImpl, they
have been removed.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140831 13f79535-47bb-0310-9956-ffa450edef68

b2544b4f59bb5384ae35610df69d4fbcd2cc95cb
:100644 100644 bb0c93bf68c3b179eb75865e098c801c30050562 57f2c99a547aab56e1dc70e91babd8e56b4038e2 M	project.xml
:000000 100644 0000000000000000000000000000000000000000 2e4da05f2c924d8aee87a6ffb63a5d75d14e7fee A	src/java/org/apache/commons/math/ContractableDoubleArray.java
:100644 100644 0fb21eef1466d63504e00a8f1f7f646dc76587c2 2e61bacc91ff114e60159240beee9d7340bb6df4 M	src/java/org/apache/commons/math/ExpandableDoubleArray.java
:100644 100644 ceeee20b57f9254f16b656b60ae00ddd62c485a8 a366ffbd2d60a8cf78075e13d53a7420e4013b96 M	src/java/org/apache/commons/math/StoreUnivariateImpl.java
:100644 100644 0c518035bf840780a1c608885d8714e4f76a323d caad8c96f3c2ed0397b6e61ca6153cff63428ed7 M	src/test/org/apache/commons/math/ExpandableDoubleArrayTest.java
:100644 100644 e3976ff5ed7e0395c11336432b9caf500ba55cab f8ef8b4e66ca9e7fb2b96f815a422b900591ecf9 M	src/test/org/apache/commons/math/ListUnivariateImplTest.java

b4e6216d2e3de7218a06d9a0c1ac74b49d7259f9
1052980399
Timothy O'Brien
Another change to the stored Univariates.  The calculations are now abstracted
into an AbstractStoreUnivariate class which take responsibility for
all statistical calculations.  AbstractStoreUnivariate is implemented by
two classes:

* StoreUnivariateImpl - This class uses a ExpandableDoubleArray for
internal storage.  This class is a more efficient class in terms
of storage and cycles for users who are interested in gathering statistics
not available in the UnivariateImpl implementation.

* ListUnivariateImpl - This class is for a situation where a user might
wish to maintain a List of numeric objects outside of a StoreUnivariate
instance.  We still need to add serious error checking in the absence of
1.5's generics, but this implementation will work with any list that
contains Number objects - (BigDecimal, BigInteger, Byte, Double, Float,
Integer, Long, Short).  This implementation ultimately transforms all
numeric objects into double primitives via Number.doubleValue().

Becuase AbstractStoreUnivariate does not hold on to any state, a user
can add values through the Univariate.addValue() function OR one can
directly manipulate the contents of the List directly.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140830 13f79535-47bb-0310-9956-ffa450edef68

b4e6216d2e3de7218a06d9a0c1ac74b49d7259f9
:000000 100644 0000000000000000000000000000000000000000 4d8342f892ceec03239fe7fcf363c979d7982432 A	src/java/org/apache/commons/math/AbstractStoreUnivariate.java
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:000000 100644 0000000000000000000000000000000000000000 825764c31fcc172cda792eab47cec0700b3bcd43 A	src/java/org/apache/commons/math/ListUnivariateImpl.java
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:100644 100644 15235b506eda81a9e31d587bdf555eadcd2bc544 ceeee20b57f9254f16b656b60ae00ddd62c485a8 M	src/java/org/apache/commons/math/StoreUnivariateImpl.java
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6c210937da3c04bf1ea55a568c69ca4e1e74904e
1052977671
Timothy O'Brien

Submitted by: Phil S.
Reviewed by: Tim O.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140829 13f79535-47bb-0310-9956-ffa450edef68

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811975e52049a6275d4b9d6587ce3af40791a9ae
1052977141
Timothy O'Brien
The following changes were made to the Univariate implementation.  The public
interface of Univariate was extracted in an interface of the same name.
Univariate, an interface, is now implemented by UnivariateImpl which contains
all code originally present in the original Univariate implementation.

* StoredUnivariate is an interface which extends Univariate and adds
measures not available in the superinterface such as mode, kurtosis, and skew

* StoredUnivariateImpl provides an implementation which uses the
ExpandableDoubleArray for internal storage.  Calculations are performed
on demand *each* time a particular measure is required no state is
maintained by this implementation.

* Univariate provided methods addValue(int), addValue(float), addValue(long).
There functions were removed as no cast is required - all of these
assignments are widening conversions - no cast required

* Removed the name property from Univariate - property not relevant to
univariate statistics


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140828 13f79535-47bb-0310-9956-ffa450edef68

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9398d8036a6e8260d11ac78e4cbc904dee46df93
1052975997
Timothy O'Brien
Added an expandable double array, this class simply contains a double[] and takes care of automatic expansion of an internal array when necessary.  Class added with accompanying unit test


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140827 13f79535-47bb-0310-9956-ffa450edef68

9398d8036a6e8260d11ac78e4cbc904dee46df93
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f824dc45939740832a8043ca745a41490da1fbeb
1052852894
Timothy O'Brien
1. Make RealMatrixImpl implement Serializable
2. Make all currently unimplemented methods throw UnsupportedOperationException
3. Add solve() method to RealMatrix interface, representing vector
   solution to AX = B, where B is the parameter and A is *this.

Phil

Obtained from: Phil S.
Submitted by: Phil S.
Reviewed by: Tim O.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140826 13f79535-47bb-0310-9956-ffa450edef68

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:100644 100644 3447a41bfa57403c08c4b6121ebc2e12683b0094 f8c50f52da1996b5f09c1bc20522e5696ed1983e M	src/java/org/apache/commons/math/RealMatrix.java
:100644 100644 67457ab888e166351e181a5d1213efdbb4e029ee a441a7d920173344254ee83ee5a2720b4e2d3b8e M	src/java/org/apache/commons/math/RealMatrixImpl.java

d6c6ce69b87de9c8e4521f01c3fbb44f84f7cac9
1052771546
Timothy O'Brien
Added myself to STATUS and PROPOSAL


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140825 13f79535-47bb-0310-9956-ffa450edef68

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0ecdb7a73056b00e22f94bba340cf6e1306de353
1052767734
Timothy O'Brien
A maven project.xml was added for conv


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140824 13f79535-47bb-0310-9956-ffa450edef68

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2ba37fcc850b99508f027bed167962430fdf8d2f
1052766278
Robert Burrell Donkin
Starting source code - basic matrix operations and univarient stats plus test code. Submitted by Phil Steitz.


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140823 13f79535-47bb-0310-9956-ffa450edef68

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3bde240f035eb8585499640b7e6cf5fc6c69e85b
1052752074
Robert Burrell Donkin
added new commons math component


git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140822 13f79535-47bb-0310-9956-ffa450edef68

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a859606a95d3eca7d8e13e8fff11daa5b1a40813
1052752074
No Author
New repository initialized by cvs2svn.

git-svn-id: https://svn.apache.org/repos/asf/jakarta/commons/proper/math/trunk@140821 13f79535-47bb-0310-9956-ffa450edef68

a859606a95d3eca7d8e13e8fff11daa5b1a40813